RNA–Protein interactions for RNA: ENST00000426763.3

RPL28-202, Transcript of ribosomal protein L28, humanhuman

TSL 1 (best)

Gene RPL28, Length 5,620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-202ENST00000426763 NISCHQ9Y2I1 1504 aa25.04■■□□□ 1.6
RPL28-202ENST00000426763 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
RPL28-202ENST00000426763 SUPT5HO00267 1087 aaKnown RBP23.37■■□□□ 1.33
RPL28-202ENST00000426763 SHROOM4Q9ULL8 1493 aa23.29■■□□□ 1.32
RPL28-202ENST00000426763 EHMT2Q96KQ7 1210 aa22.31■■□□□ 1.16
RPL28-202ENST00000426763 APLP2Q06481 763 aa22.02■■□□□ 1.12
RPL28-202ENST00000426763 FAM9AQ8IZU1 332 aaPredicted RBP21.96■■□□□ 1.11
RPL28-202ENST00000426763 TRIM41Q8WV44 630 aa21.79■■□□□ 1.08
RPL28-202ENST00000426763 ABCC9O60706 1549 aa21.66■■□□□ 1.06
RPL28-202ENST00000426763 RANGAP1P46060 587 aaPredicted RBP21.57■■□□□ 1.04
RPL28-202ENST00000426763 TTBK1Q5TCY1 1321 aaPredicted RBP21.48■■□□□ 1.03
RPL28-202ENST00000426763 UBTFP17480 764 aaKnown RBP21.46■■□□□ 1.03
RPL28-202ENST00000426763 ATP1B4Q9UN42 357 aaPredicted RBP21.41■■□□□ 1.02
RPL28-202ENST00000426763 PABPN1Q86U42 306 aaKnown RBP eCLIP21.28■■□□□ 1
RPL28-202ENST00000426763 PCGF6Q9BYE7 350 aa21.19■□□□□ 0.98
RPL28-202ENST00000426763 CCER1Q8TC90 406 aaPredicted RBP20.94■□□□□ 0.94
RPL28-202ENST00000426763 CHIC1Q5VXU3 224 aa20.89■□□□□ 0.93
RPL28-202ENST00000426763 ZEB1P37275 1124 aaPredicted RBP20.88■□□□□ 0.93
RPL28-202ENST00000426763 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
RPL28-202ENST00000426763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.84■□□□□ 0.93
RPL28-202ENST00000426763 HNRNPUL2Q1KMD3 747 aaKnown RBP20.84■□□□□ 0.93
RPL28-202ENST00000426763 PELP1Q8IZL8 1130 aaKnown RBP20.79■□□□□ 0.92
RPL28-202ENST00000426763 PPARGC1BQ86YN6 1023 aaKnown RBP20.76■□□□□ 0.91
RPL28-202ENST00000426763 ZCCHC6Q5VYS8 1495 aaKnown RBP20.74■□□□□ 0.91
RPL28-202ENST00000426763 MYT1LQ9UL68 1186 aa20.67■□□□□ 0.9
RPL28-202ENST00000426763 LOC105371045A0A1W2PR82 267 aa20.67■□□□□ 0.9
RPL28-202ENST00000426763 SCRIBQ14160 1630 aa20.66■□□□□ 0.9
RPL28-202ENST00000426763 TRIM26Q12899 539 aaPredicted RBP20.59■□□□□ 0.89
RPL28-202ENST00000426763 ITGAEP38570 1179 aa20.57■□□□□ 0.88
RPL28-202ENST00000426763 RB1CC1Q8TDY2 1594 aa20.45■□□□□ 0.86
RPL28-202ENST00000426763 FBLN2P98095 1184 aa20.4■□□□□ 0.86
RPL28-202ENST00000426763 CENPBP07199 599 aaPredicted RBP20.37■□□□□ 0.85
RPL28-202ENST00000426763 NACADO15069 1562 aa20.26■□□□□ 0.83
RPL28-202ENST00000426763 FAM50AQ14320 339 aaKnown RBP20.22■□□□□ 0.83
RPL28-202ENST00000426763 CSRNP3Q8WYN3 585 aa20.18■□□□□ 0.82
RPL28-202ENST00000426763 POLR3GLQ9BT43 218 aa20.12■□□□□ 0.81
RPL28-202ENST00000426763 TRIM52Q96A61 297 aa20.05■□□□□ 0.8
RPL28-202ENST00000426763 NEFLP07196 543 aa20.04■□□□□ 0.8
RPL28-202ENST00000426763 P3H3Q8IVL6 736 aa20.04■□□□□ 0.8
RPL28-202ENST00000426763 YTHDC1Q96MU7 727 aaKnown RBP20.03■□□□□ 0.8
RPL28-202ENST00000426763 HRCP23327 699 aa19.97■□□□□ 0.79
RPL28-202ENST00000426763 ARID3CA6NKF2 412 aa19.93■□□□□ 0.78
RPL28-202ENST00000426763 CDK11AQ9UQ88 783 aaPredicted RBP19.92■□□□□ 0.78
RPL28-202ENST00000426763 DCAF1Q9Y4B6 1507 aa19.91■□□□□ 0.78
RPL28-202ENST00000426763 RSF1Q96T23 1441 aaPredicted RBP19.87■□□□□ 0.77
RPL28-202ENST00000426763 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
RPL28-202ENST00000426763 SLC4A1APQ9BWU0 796 aaKnown RBP19.85■□□□□ 0.77
RPL28-202ENST00000426763 NEUROD1Q13562 356 aa19.8■□□□□ 0.76
RPL28-202ENST00000426763 CNGB1Q14028 1251 aaPredicted RBP19.8■□□□□ 0.76
RPL28-202ENST00000426763 ERICH6Q7L0X2 663 aa19.78■□□□□ 0.76
RPL28-202ENST00000426763 ZNF777Q9ULD5 760 aaPredicted RBP19.78■□□□□ 0.76
RPL28-202ENST00000426763 NPM1P06748 294 aaKnown RBP eCLIP19.77■□□□□ 0.76
RPL28-202ENST00000426763 CHMP7Q8WUX9 453 aaPredicted RBP19.74■□□□□ 0.75
RPL28-202ENST00000426763 BAZ1AQ9NRL2 1556 aaPredicted RBP19.73■□□□□ 0.75
RPL28-202ENST00000426763 ZNF326Q5BKZ1 582 aaKnown RBP19.68■□□□□ 0.74
RPL28-202ENST00000426763 WRNQ14191 1432 aaPredicted RBP eCLIP19.6■□□□□ 0.73
RPL28-202ENST00000426763 ESF1Q9H501 851 aaKnown RBP19.57■□□□□ 0.72
RPL28-202ENST00000426763 CECR2Q9BXF3 1484 aa19.57■□□□□ 0.72
RPL28-202ENST00000426763 ERCC6Q03468 1493 aa19.56■□□□□ 0.72
RPL28-202ENST00000426763 EEA1Q15075 1411 aa19.56■□□□□ 0.72
RPL28-202ENST00000426763 DIEXFQ68CQ4 756 aaKnown RBP19.55■□□□□ 0.72
RPL28-202ENST00000426763 BCANQ96GW7 911 aa19.54■□□□□ 0.72
RPL28-202ENST00000426763 KIF27Q86VH2 1401 aa19.48■□□□□ 0.71
RPL28-202ENST00000426763 CLIP1P30622 1438 aa19.47■□□□□ 0.71
RPL28-202ENST00000426763 MTUS2Q5JR59 1369 aa19.46■□□□□ 0.71
RPL28-202ENST00000426763 MYO15BQ96JP2 1530 aa19.44■□□□□ 0.7
RPL28-202ENST00000426763 GOLGA3Q08378 1498 aa19.44■□□□□ 0.7
RPL28-202ENST00000426763 ANP32CO43423 234 aa19.4■□□□□ 0.7
RPL28-202ENST00000426763 SMARCA2P51531 1590 aa19.39■□□□□ 0.69
RPL28-202ENST00000426763 TSPY4P0CV99 314 aa19.39■□□□□ 0.69
RPL28-202ENST00000426763 TSPY10P0CW01 314 aa19.39■□□□□ 0.69
RPL28-202ENST00000426763 STAG3Q9UJ98 1225 aa19.38■□□□□ 0.69
RPL28-202ENST00000426763 CHIC2Q9UKJ5 165 aa19.35■□□□□ 0.69
RPL28-202ENST00000426763 CHGAP10645 457 aaKnown RBP19.35■□□□□ 0.69
RPL28-202ENST00000426763 MROH2BQ7Z745 1585 aa19.34■□□□□ 0.69
RPL28-202ENST00000426763 PLEKHD1A6NEE1 506 aa19.32■□□□□ 0.68
RPL28-202ENST00000426763 ZNF316A6NFI3 1004 aaPredicted RBP19.31■□□□□ 0.68
RPL28-202ENST00000426763 TONSLQ96HA7 1378 aa19.31■□□□□ 0.68
RPL28-202ENST00000426763 CEP164Q9UPV0 1460 aa19.31■□□□□ 0.68
RPL28-202ENST00000426763 DAXXQ9UER7 740 aaPredicted RBP19.3■□□□□ 0.68
RPL28-202ENST00000426763 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.29■□□□□ 0.68
RPL28-202ENST00000426763 KCNH8Q96L42 1107 aa19.28■□□□□ 0.68
RPL28-202ENST00000426763 CEP162Q5TB80 1403 aa19.27■□□□□ 0.68
RPL28-202ENST00000426763 PLPPR3Q6T4P5 718 aa19.27■□□□□ 0.67
RPL28-202ENST00000426763 PDS5BQ9NTI5 1447 aa19.25■□□□□ 0.67
RPL28-202ENST00000426763 CCDC88BA6NC98 1476 aa19.24■□□□□ 0.67
RPL28-202ENST00000426763 TNIKQ9UKE5 1360 aa19.22■□□□□ 0.67
RPL28-202ENST00000426763 NEFMP07197 916 aa19.22■□□□□ 0.67
RPL28-202ENST00000426763 CUX2O14529 1486 aa19.2■□□□□ 0.66
RPL28-202ENST00000426763 CARMIL1Q5VZK9 1371 aa19.16■□□□□ 0.66
RPL28-202ENST00000426763 CLSPNQ9HAW4 1339 aa19.14■□□□□ 0.66
RPL28-202ENST00000426763 TOP2AP11388 1531 aaKnown RBP19.13■□□□□ 0.65
RPL28-202ENST00000426763 CFDP1Q9UEE9 299 aaPredicted RBP19.11■□□□□ 0.65
RPL28-202ENST00000426763 RRP7BPQ9NSQ0 103 aa19.1■□□□□ 0.65
RPL28-202ENST00000426763 SLC24A1O60721 1099 aa19.09■□□□□ 0.65
RPL28-202ENST00000426763 ACIN1Q9UKV3 1341 aaKnown RBP19.08■□□□□ 0.65
RPL28-202ENST00000426763 EIF4G1Q04637 1599 aaKnown RBP19.08■□□□□ 0.65
RPL28-202ENST00000426763 WIZO95785 1651 aa19.06■□□□□ 0.64
RPL28-202ENST00000426763 CADPSQ9ULU8 1353 aa19.06■□□□□ 0.64
RPL28-202ENST00000426763 SOGA1O94964 1423 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms