RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	NISCH	Q9Y2I1	1504 aa		34.8	■■■■□ 3.16
DDX39A-209	ENST00000589318	CCDC180	Q9P1Z9	1646 aa		30.33	■■■□□ 2.45
DDX39A-209	ENST00000589318	ZCCHC6	Q5VYS8	1495 aa	Known RBP	29.26	■■■□□ 2.27
DDX39A-209	ENST00000589318	DCAF1	Q9Y4B6	1507 aa		28.78	■■■□□ 2.2
DDX39A-209	ENST00000589318	ABCC9	O60706	1549 aa		28.61	■■■□□ 2.17
DDX39A-209	ENST00000589318	DCAF8L2	P0C7V8	631 aa		28.61	■■■□□ 2.17
DDX39A-209	ENST00000589318	MYO15B	Q96JP2	1530 aa		28.41	■■■□□ 2.14
DDX39A-209	ENST00000589318	SHROOM4	Q9ULL8	1493 aa		28.39	■■■□□ 2.13
DDX39A-209	ENST00000589318	NACAD	O15069	1562 aa		28.2	■■■□□ 2.11
DDX39A-209	ENST00000589318	RB1CC1	Q8TDY2	1594 aa		27.95	■■■□□ 2.06
DDX39A-209	ENST00000589318	SCRIB	Q14160	1630 aa		27.9	■■■□□ 2.06
DDX39A-209	ENST00000589318	UNC13A	Q9UPW8	1703 aa		27.5	■■□□□ 1.99
DDX39A-209	ENST00000589318	SUPT5H	O00267	1087 aa	Known RBP	27.3	■■□□□ 1.96
DDX39A-209	ENST00000589318	BICRA	Q9NZM4	1560 aa		27.19	■■□□□ 1.94
DDX39A-209	ENST00000589318	CECR2	Q9BXF3	1484 aa		27.06	■■□□□ 1.92
DDX39A-209	ENST00000589318	RSF1	Q96T23	1441 aa	Predicted RBP	27.02	■■□□□ 1.92
DDX39A-209	ENST00000589318	PABPN1	Q86U42	306 aa	Known RBP eCLIP	26.97	■■□□□ 1.91	1e-10	■■■■■ 41
DDX39A-209	ENST00000589318	MROH2B	Q7Z745	1585 aa		26.91	■■□□□ 1.9
DDX39A-209	ENST00000589318	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	26.85	■■□□□ 1.89
DDX39A-209	ENST00000589318	SMARCA4	P51532	1647 aa		26.76	■■□□□ 1.87
DDX39A-209	ENST00000589318	WIZ	O95785	1651 aa		26.71	■■□□□ 1.87
DDX39A-209	ENST00000589318	PEG3	Q9GZU2	1588 aa		26.44	■■□□□ 1.82
DDX39A-209	ENST00000589318	TOP2A	P11388	1531 aa	Known RBP	26.4	■■□□□ 1.82
DDX39A-209	ENST00000589318	EIF4G1	Q04637	1599 aa	Known RBP	26.32	■■□□□ 1.8
DDX39A-209	ENST00000589318	ATAD2B	Q9ULI0	1458 aa		26.28	■■□□□ 1.8
DDX39A-209	ENST00000589318	SMARCA2	P51531	1590 aa		26.25	■■□□□ 1.79
DDX39A-209	ENST00000589318	CHIC1	Q5VXU3	224 aa		26.21	■■□□□ 1.79
DDX39A-209	ENST00000589318	CCDC88B	A6NC98	1476 aa		26.12	■■□□□ 1.77
DDX39A-209	ENST00000589318	BAZ1B	Q9UIG0	1483 aa	Known RBP	26.11	■■□□□ 1.77
DDX39A-209	ENST00000589318	NCAPD3	P42695	1498 aa		26.04	■■□□□ 1.76
DDX39A-209	ENST00000589318	HMGXB3	Q12766	1538 aa		26.03	■■□□□ 1.76
DDX39A-209	ENST00000589318	CC2D2A	Q9P2K1	1620 aa		25.92	■■□□□ 1.74
DDX39A-209	ENST00000589318	TRIM41	Q8WV44	630 aa		25.65	■■□□□ 1.7
DDX39A-209	ENST00000589318	ABCC8	Q09428	1581 aa		25.62	■■□□□ 1.69
DDX39A-209	ENST00000589318	CFTR	P13569	1480 aa		25.49	■■□□□ 1.67
DDX39A-209	ENST00000589318	PRDM2	Q13029	1718 aa		25.4	■■□□□ 1.66
DDX39A-209	ENST00000589318	WRN	Q14191	1432 aa	Predicted RBP eCLIP	25.4	■■□□□ 1.66	1e-9	■■■■■ 51
DDX39A-209	ENST00000589318	CADPS	Q9ULU8	1353 aa		25.36	■■□□□ 1.65
DDX39A-209	ENST00000589318	SYNJ1	O43426	1573 aa		25.35	■■□□□ 1.65
DDX39A-209	ENST00000589318	DNAJC5B	Q9UF47	199 aa		25.29	■■□□□ 1.64
DDX39A-209	ENST00000589318	TOP2B	Q02880	1626 aa		25.23	■■□□□ 1.63
DDX39A-209	ENST00000589318	BIVM-ERCC5	R4GMW8	1640 aa		25.21	■■□□□ 1.63
DDX39A-209	ENST00000589318	LOC105371045	A0A1W2PR82	267 aa		25.2	■■□□□ 1.62
DDX39A-209	ENST00000589318	FAM9A	Q8IZU1	332 aa	Predicted RBP	25.2	■■□□□ 1.62
DDX39A-209	ENST00000589318	NES	P48681	1621 aa		25.17	■■□□□ 1.62
DDX39A-209	ENST00000589318	CUX1	P39880	1505 aa		25.16	■■□□□ 1.62
DDX39A-209	ENST00000589318	LAMC3	Q9Y6N6	1575 aa		25.15	■■□□□ 1.62
DDX39A-209	ENST00000589318	SOGA1	O94964	1423 aa		25.13	■■□□□ 1.61
DDX39A-209	ENST00000589318	FANCD2	Q9BXW9	1451 aa		25.09	■■□□□ 1.61
DDX39A-209	ENST00000589318	RUSC2	Q8N2Y8	1516 aa		25.06	■■□□□ 1.6
DDX39A-209	ENST00000589318	EEA1	Q15075	1411 aa		25.03	■■□□□ 1.6
DDX39A-209	ENST00000589318	CEP164	Q9UPV0	1460 aa		24.92	■■□□□ 1.58
DDX39A-209	ENST00000589318	PDS5B	Q9NTI5	1447 aa		24.9	■■□□□ 1.58
DDX39A-209	ENST00000589318	DNMBP	Q6XZF7	1577 aa		24.89	■■□□□ 1.57
DDX39A-209	ENST00000589318	KIF21A	Q7Z4S6	1674 aa		24.89	■■□□□ 1.57
DDX39A-209	ENST00000589318	CSRNP3	Q8WYN3	585 aa		24.88	■■□□□ 1.57
DDX39A-209	ENST00000589318	FGD5	Q6ZNL6	1462 aa		24.85	■■□□□ 1.57
DDX39A-209	ENST00000589318	TOPBP1	Q92547	1522 aa		24.84	■■□□□ 1.57
DDX39A-209	ENST00000589318	EHMT2	Q96KQ7	1210 aa		24.84	■■□□□ 1.57
DDX39A-209	ENST00000589318	URB2	Q14146	1524 aa	Known RBP	24.81	■■□□□ 1.56
DDX39A-209	ENST00000589318	KIF21B	O75037	1637 aa		24.76	■■□□□ 1.55
DDX39A-209	ENST00000589318	POLA1	P09884	1462 aa	Predicted RBP	24.73	■■□□□ 1.55
DDX39A-209	ENST00000589318	KIF27	Q86VH2	1401 aa		24.72	■■□□□ 1.55
DDX39A-209	ENST00000589318	GOLGA3	Q08378	1498 aa		24.71	■■□□□ 1.55
DDX39A-209	ENST00000589318	CUX2	O14529	1486 aa		24.67	■■□□□ 1.54
DDX39A-209	ENST00000589318	RAD54L2	Q9Y4B4	1467 aa		24.65	■■□□□ 1.54
DDX39A-209	ENST00000589318	TNIK	Q9UKE5	1360 aa		24.64	■■□□□ 1.54
DDX39A-209	ENST00000589318	ABCA10	Q8WWZ4	1543 aa		24.63	■■□□□ 1.53
DDX39A-209	ENST00000589318	PRX	Q9BXM0	1461 aa		24.63	■■□□□ 1.53
DDX39A-209	ENST00000589318	RAPGEF2	Q9Y4G8	1499 aa		24.62	■■□□□ 1.53
DDX39A-209	ENST00000589318	MRC2	Q9UBG0	1479 aa		24.61	■■□□□ 1.53
DDX39A-209	ENST00000589318	WDR97	A6NE52	1622 aa		24.61	■■□□□ 1.53
DDX39A-209	ENST00000589318	ERICH3	Q5RHP9	1530 aa		24.58	■■□□□ 1.52
DDX39A-209	ENST00000589318	IGF1R	P08069	1367 aa		24.54	■■□□□ 1.52
DDX39A-209	ENST00000589318	UBTF	P17480	764 aa	Known RBP	24.53	■■□□□ 1.52
DDX39A-209	ENST00000589318	CEP162	Q5TB80	1403 aa		24.53	■■□□□ 1.52
DDX39A-209	ENST00000589318	WDR62	O43379	1518 aa		24.51	■■□□□ 1.51
DDX39A-209	ENST00000589318	HRC	P23327	699 aa		24.51	■■□□□ 1.51
DDX39A-209	ENST00000589318	TARBP1	Q13395	1621 aa	Known RBP	24.5	■■□□□ 1.51
DDX39A-209	ENST00000589318	ERCC6	Q03468	1493 aa		24.47	■■□□□ 1.51
DDX39A-209	ENST00000589318	THOC2	Q8NI27	1593 aa	Known RBP	24.46	■■□□□ 1.51
DDX39A-209	ENST00000589318	ABCA5	Q8WWZ7	1642 aa		24.46	■■□□□ 1.51
DDX39A-209	ENST00000589318	CARMIL1	Q5VZK9	1371 aa		24.39	■■□□□ 1.49
DDX39A-209	ENST00000589318	TDRD9	Q8NDG6	1382 aa	Known RBP	24.38	■■□□□ 1.49
DDX39A-209	ENST00000589318	CUL7	Q14999	1698 aa		24.35	■■□□□ 1.49
DDX39A-209	ENST00000589318	GAPVD1	Q14C86	1478 aa		24.35	■■□□□ 1.49
DDX39A-209	ENST00000589318	PELP1	Q8IZL8	1130 aa	Known RBP	24.33	■■□□□ 1.49
DDX39A-209	ENST00000589318	IFT140	Q96RY7	1462 aa		24.31	■■□□□ 1.48
DDX39A-209	ENST00000589318	CLIP1	P30622	1438 aa		24.31	■■□□□ 1.48
DDX39A-209	ENST00000589318	PBRM1	Q86U86	1689 aa		24.27	■■□□□ 1.48
DDX39A-209	ENST00000589318	AQR	O60306	1485 aa	Known RBP eCLIP	24.23	■■□□□ 1.47	1e-7	■■■■■ 30.6
DDX39A-209	ENST00000589318	ZNF608	Q9ULD9	1512 aa	Predicted RBP	24.23	■■□□□ 1.47
DDX39A-209	ENST00000589318	EIF4G3	O43432	1585 aa	Known RBP	24.15	■■□□□ 1.46
DDX39A-209	ENST00000589318	GRIN2B	Q13224	1484 aa		24.14	■■□□□ 1.46
DDX39A-209	ENST00000589318	RANGAP1	P46060	587 aa	Predicted RBP	24.13	■■□□□ 1.45
DDX39A-209	ENST00000589318	ARAP1	Q96P48	1450 aa		24.13	■■□□□ 1.45
DDX39A-209	ENST00000589318	ADAMTS12	P58397	1594 aa		24.12	■■□□□ 1.45
DDX39A-209	ENST00000589318	VPS8	Q8N3P4	1428 aa		24.12	■■□□□ 1.45
DDX39A-209	ENST00000589318	CTTNBP2	Q8WZ74	1663 aa		24.12	■■□□□ 1.45
DDX39A-209	ENST00000589318	ARHGAP35	Q9NRY4	1499 aa		24.1	■■□□□ 1.45

Retrieved 100 of 20,778 RNA–protein pairs in 15 ms