RNA–Protein interactions for RNA: ENST00000558131.1

RPL28-205, Transcript of ribosomal protein L28, humanhuman

TSL 5 BASIC

Gene RPL28, Length 444 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-205ENST00000558131 NISCHQ9Y2I1 1504 aa41.43■■■■■ 4.22
RPL28-205ENST00000558131 CCDC180Q9P1Z9 1646 aa37.26■■■■□ 3.56
RPL28-205ENST00000558131 ABCC9O60706 1549 aa36.99■■■■□ 3.51
RPL28-205ENST00000558131 RB1CC1Q8TDY2 1594 aa35.3■■■■□ 3.24
RPL28-205ENST00000558131 NACADO15069 1562 aa35.08■■■■□ 3.21
RPL28-205ENST00000558131 UNC13AQ9UPW8 1703 aa34.73■■■■□ 3.15
RPL28-205ENST00000558131 MYO15BQ96JP2 1530 aa34.67■■■■□ 3.14
RPL28-205ENST00000558131 DNAJC5BQ9UF47 199 aa34.61■■■■□ 3.13
RPL28-205ENST00000558131 DCAF8L2P0C7V8 631 aa34.56■■■■□ 3.12
RPL28-205ENST00000558131 ZCCHC6Q5VYS8 1495 aaKnown RBP34.41■■■■□ 3.1
RPL28-205ENST00000558131 BICRAQ9NZM4 1560 aa34.4■■■■□ 3.1
RPL28-205ENST00000558131 PABPN1Q86U42 306 aaKnown RBP eCLIP34.33■■■■□ 3.09
RPL28-205ENST00000558131 DCAF1Q9Y4B6 1507 aa34.27■■■■□ 3.08
RPL28-205ENST00000558131 SCRIBQ14160 1630 aa33.86■■■■□ 3.01
RPL28-205ENST00000558131 SHROOM4Q9ULL8 1493 aa33.86■■■■□ 3.01
RPL28-205ENST00000558131 CC2D2AQ9P2K1 1620 aa33.52■■■□□ 2.96
RPL28-205ENST00000558131 EIF4G1Q04637 1599 aaKnown RBP33.47■■■□□ 2.95
RPL28-205ENST00000558131 CECR2Q9BXF3 1484 aa33.3■■■□□ 2.92
RPL28-205ENST00000558131 SMARCA4P51532 1647 aa32.36■■■□□ 2.77
RPL28-205ENST00000558131 NCAPD3P42695 1498 aa32.35■■■□□ 2.77
RPL28-205ENST00000558131 ATAD2BQ9ULI0 1458 aa32.29■■■□□ 2.76
RPL28-205ENST00000558131 HMGXB3Q12766 1538 aa32.21■■■□□ 2.75
RPL28-205ENST00000558131 SMARCA2P51531 1590 aa32.19■■■□□ 2.74
RPL28-205ENST00000558131 BAZ1AQ9NRL2 1556 aaPredicted RBP32.14■■■□□ 2.74
RPL28-205ENST00000558131 PEG3Q9GZU2 1588 aa32.08■■■□□ 2.73
RPL28-205ENST00000558131 BAZ1BQ9UIG0 1483 aaKnown RBP31.94■■■□□ 2.7
RPL28-205ENST00000558131 MROH2BQ7Z745 1585 aa31.94■■■□□ 2.7
RPL28-205ENST00000558131 NESP48681 1621 aa31.86■■■□□ 2.69
RPL28-205ENST00000558131 CUX2O14529 1486 aa31.86■■■□□ 2.69
RPL28-205ENST00000558131 ERCC6Q03468 1493 aa31.85■■■□□ 2.69
RPL28-205ENST00000558131 LAMC3Q9Y6N6 1575 aa31.67■■■□□ 2.66
RPL28-205ENST00000558131 THOC2Q8NI27 1593 aaKnown RBP31.65■■■□□ 2.66
RPL28-205ENST00000558131 DNAJC5Q9H3Z4 198 aa31.63■■■□□ 2.65
RPL28-205ENST00000558131 WIZO95785 1651 aa31.6■■■□□ 2.65
RPL28-205ENST00000558131 KIF21AQ7Z4S6 1674 aa31.57■■■□□ 2.65
RPL28-205ENST00000558131 PDS5BQ9NTI5 1447 aa31.33■■■□□ 2.61
RPL28-205ENST00000558131 CADPSQ9ULU8 1353 aa31.3■■■□□ 2.6
RPL28-205ENST00000558131 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
RPL28-205ENST00000558131 TOP2AP11388 1531 aaKnown RBP31.18■■■□□ 2.58
RPL28-205ENST00000558131 WDR62O43379 1518 aa31.16■■■□□ 2.58
RPL28-205ENST00000558131 MRC2Q9UBG0 1479 aa31.15■■■□□ 2.58
RPL28-205ENST00000558131 CFTRP13569 1480 aa31.05■■■□□ 2.56
RPL28-205ENST00000558131 CEP164Q9UPV0 1460 aa31.03■■■□□ 2.56
RPL28-205ENST00000558131 FANCD2Q9BXW9 1451 aa31■■■□□ 2.55
RPL28-205ENST00000558131 PRDM2Q13029 1718 aa30.95■■■□□ 2.54
RPL28-205ENST00000558131 URB2Q14146 1524 aaKnown RBP30.82■■■□□ 2.52
RPL28-205ENST00000558131 CCDC88BA6NC98 1476 aa30.76■■■□□ 2.51
RPL28-205ENST00000558131 TOPBP1Q92547 1522 aa30.47■■■□□ 2.47
RPL28-205ENST00000558131 ZNF608Q9ULD9 1512 aaPredicted RBP30.4■■■□□ 2.46
RPL28-205ENST00000558131 DNMBPQ6XZF7 1577 aa30.39■■■□□ 2.46
RPL28-205ENST00000558131 IFT140Q96RY7 1462 aa30.38■■■□□ 2.45
RPL28-205ENST00000558131 EIF4G3O43432 1585 aaKnown RBP30.32■■■□□ 2.44
RPL28-205ENST00000558131 ABCC8Q09428 1581 aa30.32■■■□□ 2.44
RPL28-205ENST00000558131 TARBP1Q13395 1621 aaKnown RBP30.29■■■□□ 2.44
RPL28-205ENST00000558131 OSCARQ8IYS5 282 aa30.22■■■□□ 2.43
RPL28-205ENST00000558131 TRIM41Q8WV44 630 aa30.19■■■□□ 2.42
RPL28-205ENST00000558131 POLA1P09884 1462 aaPredicted RBP30.17■■■□□ 2.42
RPL28-205ENST00000558131 RIMBP3CA6NJZ7 1639 aa30.11■■■□□ 2.41
RPL28-205ENST00000558131 RIMBP3BA6NNM3 1639 aa30.11■■■□□ 2.41
RPL28-205ENST00000558131 RIMBP3Q9UFD9 1639 aa30.11■■■□□ 2.41
RPL28-205ENST00000558131 CHD1O14646 1710 aa30.1■■■□□ 2.41
RPL28-205ENST00000558131 AQRO60306 1485 aaKnown RBP eCLIP30.06■■■□□ 2.43e-8■■■■□ 26.2
RPL28-205ENST00000558131 RAD54L2Q9Y4B4 1467 aa30.02■■■□□ 2.4
RPL28-205ENST00000558131 CUX1P39880 1505 aa30.01■■■□□ 2.4
RPL28-205ENST00000558131 ARHGEF11O15085 1522 aa29.97■■■□□ 2.39
RPL28-205ENST00000558131 FGD5Q6ZNL6 1462 aa29.97■■■□□ 2.39
RPL28-205ENST00000558131 WDR97A6NE52 1622 aa29.96■■■□□ 2.39
RPL28-205ENST00000558131 SOGA1O94964 1423 aa29.9■■■□□ 2.38
RPL28-205ENST00000558131 TDRD9Q8NDG6 1382 aaKnown RBP29.84■■■□□ 2.37
RPL28-205ENST00000558131 SNAPC4Q5SXM2 1469 aa29.8■■■□□ 2.36
RPL28-205ENST00000558131 PBRM1Q86U86 1689 aa29.77■■■□□ 2.36
RPL28-205ENST00000558131 CLASP1Q7Z460 1538 aa29.73■■■□□ 2.35
RPL28-205ENST00000558131 MAGI1Q96QZ7 1491 aaPredicted RBP29.72■■■□□ 2.35
RPL28-205ENST00000558131 ABCA5Q8WWZ7 1642 aa29.71■■■□□ 2.35
RPL28-205ENST00000558131 GRIN2BQ13224 1484 aa29.69■■■□□ 2.34
RPL28-205ENST00000558131 ARAP1Q96P48 1450 aa29.69■■■□□ 2.34
RPL28-205ENST00000558131 SUPT5HO00267 1087 aaKnown RBP29.69■■■□□ 2.34
RPL28-205ENST00000558131 ABCA10Q8WWZ4 1543 aa29.65■■■□□ 2.34
RPL28-205ENST00000558131 FBLN2P98095 1184 aa29.64■■■□□ 2.34
RPL28-205ENST00000558131 BIVM-ERCC5R4GMW8 1640 aa29.63■■■□□ 2.33
RPL28-205ENST00000558131 SYNJ1O43426 1573 aa29.62■■■□□ 2.33
RPL28-205ENST00000558131 SYNJ2O15056 1496 aa29.61■■■□□ 2.33
RPL28-205ENST00000558131 GAPVD1Q14C86 1478 aa29.6■■■□□ 2.33
RPL28-205ENST00000558131 TOP2BQ02880 1626 aa29.56■■■□□ 2.32
RPL28-205ENST00000558131 CYB5RLQ6IPT4 315 aa29.52■■■□□ 2.32
RPL28-205ENST00000558131 CHMP7Q8WUX9 453 aaPredicted RBP29.47■■■□□ 2.31
RPL28-205ENST00000558131 ADAMTS12P58397 1594 aa29.45■■■□□ 2.31
RPL28-205ENST00000558131 WRNQ14191 1432 aaPredicted RBP eCLIP29.43■■■□□ 2.3
RPL28-205ENST00000558131 GRIN2AQ12879 1464 aa29.36■■■□□ 2.29
RPL28-205ENST00000558131 CEP170Q5SW79 1584 aa29.33■■■□□ 2.29
RPL28-205ENST00000558131 ERICH3Q5RHP9 1530 aa29.28■■■□□ 2.28
RPL28-205ENST00000558131 NUP160Q12769 1436 aa29.28■■■□□ 2.28
RPL28-205ENST00000558131 ERCC6L2Q5T890 1561 aa29.27■■■□□ 2.28
RPL28-205ENST00000558131 SHROOM2Q13796 1616 aa29.24■■■□□ 2.27
RPL28-205ENST00000558131 FHAD1B1AJZ9 1412 aa29.21■■■□□ 2.27
RPL28-205ENST00000558131 TRHP20396 242 aaPredicted RBP29.09■■■□□ 2.25
RPL28-205ENST00000558131 RUSC2Q8N2Y8 1516 aa29.06■■■□□ 2.24
RPL28-205ENST00000558131 CUL7Q14999 1698 aa28.92■■■□□ 2.22
RPL28-205ENST00000558131 PRG4Q92954 1404 aaPredicted RBP28.88■■■□□ 2.21
RPL28-205ENST00000558131 IGF1RP08069 1367 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms