RNA–Protein interactions for RNA: ENST00000587730.5

DDX39A-206, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,813 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-206ENST00000587730 NISCHQ9Y2I1 1504 aa38.11■■■■□ 3.69
DDX39A-206ENST00000587730 CCDC180Q9P1Z9 1646 aa32.78■■■□□ 2.84
DDX39A-206ENST00000587730 ZCCHC6Q5VYS8 1495 aaKnown RBP32.31■■■□□ 2.76
DDX39A-206ENST00000587730 SHROOM4Q9ULL8 1493 aa32.1■■■□□ 2.73
DDX39A-206ENST00000587730 SUPT5HO00267 1087 aaKnown RBP31.65■■■□□ 2.66
DDX39A-206ENST00000587730 DCAF1Q9Y4B6 1507 aa31.56■■■□□ 2.64
DDX39A-206ENST00000587730 ABCC9O60706 1549 aa31.51■■■□□ 2.64
DDX39A-206ENST00000587730 CHIC1Q5VXU3 224 aa31.07■■■□□ 2.56
DDX39A-206ENST00000587730 DCAF8L2P0C7V8 631 aa31.05■■■□□ 2.56
DDX39A-206ENST00000587730 MYO15BQ96JP2 1530 aa30.83■■■□□ 2.53
DDX39A-206ENST00000587730 HRCP23327 699 aa30.52■■■□□ 2.48
DDX39A-206ENST00000587730 NACADO15069 1562 aa30.51■■■□□ 2.47
DDX39A-206ENST00000587730 RB1CC1Q8TDY2 1594 aa30.42■■■□□ 2.46
DDX39A-206ENST00000587730 RSF1Q96T23 1441 aaPredicted RBP30.14■■■□□ 2.42
DDX39A-206ENST00000587730 PCGF6Q9BYE7 350 aa30.14■■■□□ 2.42
DDX39A-206ENST00000587730 SCRIBQ14160 1630 aa30.12■■■□□ 2.41
DDX39A-206ENST00000587730 LOC105371045A0A1W2PR82 267 aa29.89■■■□□ 2.38
DDX39A-206ENST00000587730 UNC13AQ9UPW8 1703 aa29.84■■■□□ 2.37
DDX39A-206ENST00000587730 TRIM26Q12899 539 aaPredicted RBP29.84■■■□□ 2.37
DDX39A-206ENST00000587730 TRIM41Q8WV44 630 aa29.71■■■□□ 2.35
DDX39A-206ENST00000587730 PABPN1Q86U42 306 aaKnown RBP eCLIP29.61■■■□□ 2.331e-10■■■■■ 41
DDX39A-206ENST00000587730 BICRAQ9NZM4 1560 aa29.56■■■□□ 2.32
DDX39A-206ENST00000587730 ZEB1P37275 1124 aaPredicted RBP29.52■■■□□ 2.32
DDX39A-206ENST00000587730 DNAJC5BQ9UF47 199 aa29.5■■■□□ 2.31
DDX39A-206ENST00000587730 MROH2BQ7Z745 1585 aa29.47■■■□□ 2.31
DDX39A-206ENST00000587730 CECR2Q9BXF3 1484 aa29.46■■■□□ 2.31
DDX39A-206ENST00000587730 PPARGC1BQ86YN6 1023 aaKnown RBP29.41■■■□□ 2.3
DDX39A-206ENST00000587730 BAZ1AQ9NRL2 1556 aaPredicted RBP29.37■■■□□ 2.29
DDX39A-206ENST00000587730 WIZO95785 1651 aa29.28■■■□□ 2.28
DDX39A-206ENST00000587730 EIF4G1Q04637 1599 aaKnown RBP29.15■■■□□ 2.26
DDX39A-206ENST00000587730 FAM9AQ8IZU1 332 aaPredicted RBP29.13■■■□□ 2.25
DDX39A-206ENST00000587730 TOP2AP11388 1531 aaKnown RBP29.08■■■□□ 2.25
DDX39A-206ENST00000587730 SMARCA4P51532 1647 aa28.96■■■□□ 2.23
DDX39A-206ENST00000587730 SMARCA2P51531 1590 aa28.82■■■□□ 2.2
DDX39A-206ENST00000587730 CCDC88BA6NC98 1476 aa28.81■■■□□ 2.2
DDX39A-206ENST00000587730 EEA1Q15075 1411 aa28.8■■■□□ 2.2
DDX39A-206ENST00000587730 WRNQ14191 1432 aaPredicted RBP eCLIP28.77■■■□□ 2.22e-9■■■■■ 39.4
DDX39A-206ENST00000587730 EHMT2Q96KQ7 1210 aa28.63■■■□□ 2.17
DDX39A-206ENST00000587730 TNIKQ9UKE5 1360 aa28.61■■■□□ 2.17
DDX39A-206ENST00000587730 ABCC8Q09428 1581 aa28.61■■■□□ 2.17
DDX39A-206ENST00000587730 PEG3Q9GZU2 1588 aa28.58■■■□□ 2.17
DDX39A-206ENST00000587730 CEP162Q5TB80 1403 aa28.54■■■□□ 2.16
DDX39A-206ENST00000587730 CC2D2AQ9P2K1 1620 aa28.48■■■□□ 2.15
DDX39A-206ENST00000587730 CSRNP3Q8WYN3 585 aa28.44■■■□□ 2.14
DDX39A-206ENST00000587730 SOGA1O94964 1423 aa28.42■■■□□ 2.14
DDX39A-206ENST00000587730 CCER1Q8TC90 406 aaPredicted RBP28.42■■■□□ 2.14
DDX39A-206ENST00000587730 GOLGA3Q08378 1498 aa28.42■■■□□ 2.14
DDX39A-206ENST00000587730 ATAD2BQ9ULI0 1458 aa28.32■■■□□ 2.12
DDX39A-206ENST00000587730 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.27■■■□□ 2.12
DDX39A-206ENST00000587730 PELP1Q8IZL8 1130 aaKnown RBP28.27■■■□□ 2.12
DDX39A-206ENST00000587730 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
DDX39A-206ENST00000587730 KIF21BO75037 1637 aa28.26■■■□□ 2.11
DDX39A-206ENST00000587730 UBTFP17480 764 aaKnown RBP28.22■■■□□ 2.11
DDX39A-206ENST00000587730 RUSC2Q8N2Y8 1516 aa28.18■■■□□ 2.1
DDX39A-206ENST00000587730 NCAPD3P42695 1498 aa28.17■■■□□ 2.1
DDX39A-206ENST00000587730 BAZ1BQ9UIG0 1483 aaKnown RBP28.16■■■□□ 2.1
DDX39A-206ENST00000587730 SYNJ1O43426 1573 aa28.1■■■□□ 2.09
DDX39A-206ENST00000587730 HMGXB3Q12766 1538 aa28.07■■■□□ 2.08
DDX39A-206ENST00000587730 SCAF1Q9H7N4 1312 aaKnown RBP28.03■■■□□ 2.08
DDX39A-206ENST00000587730 CLIP1P30622 1438 aa28■■■□□ 2.07
DDX39A-206ENST00000587730 DIEXFQ68CQ4 756 aaKnown RBP27.98■■■□□ 2.07
DDX39A-206ENST00000587730 VPS8Q8N3P4 1428 aa27.97■■■□□ 2.07
DDX39A-206ENST00000587730 TOP2BQ02880 1626 aa27.92■■■□□ 2.06
DDX39A-206ENST00000587730 CENPBP07199 599 aaPredicted RBP27.92■■■□□ 2.06
DDX39A-206ENST00000587730 ACIN1Q9UKV3 1341 aaKnown RBP27.91■■■□□ 2.06
DDX39A-206ENST00000587730 TTBK1Q5TCY1 1321 aaPredicted RBP27.84■■■□□ 2.05
DDX39A-206ENST00000587730 BIVM-ERCC5R4GMW8 1640 aa27.84■■■□□ 2.05
DDX39A-206ENST00000587730 APLP2Q06481 763 aa27.83■■■□□ 2.05
DDX39A-206ENST00000587730 ERICH3Q5RHP9 1530 aa27.82■■■□□ 2.04
DDX39A-206ENST00000587730 ZNF316A6NFI3 1004 aaPredicted RBP27.81■■■□□ 2.04
DDX39A-206ENST00000587730 RAPGEF2Q9Y4G8 1499 aa27.79■■■□□ 2.04
DDX39A-206ENST00000587730 PRXQ9BXM0 1461 aa27.68■■■□□ 2.02
DDX39A-206ENST00000587730 NEUROD1Q13562 356 aa27.66■■■□□ 2.02
DDX39A-206ENST00000587730 CLSPNQ9HAW4 1339 aa27.66■■■□□ 2.02
DDX39A-206ENST00000587730 HNRNPUL2Q1KMD3 747 aaKnown RBP27.57■■■□□ 2
DDX39A-206ENST00000587730 KIF27Q86VH2 1401 aa27.54■■■□□ 2
DDX39A-206ENST00000587730 PRDM2Q13029 1718 aa27.53■■■□□ 2
DDX39A-206ENST00000587730 CFTRP13569 1480 aa27.48■■□□□ 1.99
DDX39A-206ENST00000587730 ARAP1Q96P48 1450 aa27.48■■□□□ 1.99
DDX39A-206ENST00000587730 CUX1P39880 1505 aa27.48■■□□□ 1.99
DDX39A-206ENST00000587730 NESP48681 1621 aa27.47■■□□□ 1.99
DDX39A-206ENST00000587730 GTF3C3Q9Y5Q9 886 aa27.45■■□□□ 1.98
DDX39A-206ENST00000587730 CADPSQ9ULU8 1353 aa27.42■■□□□ 1.98
DDX39A-206ENST00000587730 RRBP1Q9P2E9 1410 aaKnown RBP27.38■■□□□ 1.97
DDX39A-206ENST00000587730 CUX2O14529 1486 aa27.33■■□□□ 1.97
DDX39A-206ENST00000587730 LAMC3Q9Y6N6 1575 aa27.32■■□□□ 1.96
DDX39A-206ENST00000587730 DHX57Q6P158 1386 aaKnown RBP27.29■■□□□ 1.96
DDX39A-206ENST00000587730 MAP3K1Q13233 1512 aa27.27■■□□□ 1.96
DDX39A-206ENST00000587730 RANGAP1P46060 587 aaPredicted RBP27.24■■□□□ 1.95
DDX39A-206ENST00000587730 MIER1Q8N108 512 aa27.23■■□□□ 1.95
DDX39A-206ENST00000587730 ARHGAP35Q9NRY4 1499 aa27.22■■□□□ 1.95
DDX39A-206ENST00000587730 CCNB3Q8WWL7 1395 aa27.19■■□□□ 1.94
DDX39A-206ENST00000587730 KANK4Q5T7N3 995 aaPredicted RBP27.17■■□□□ 1.94
DDX39A-206ENST00000587730 PDS5BQ9NTI5 1447 aa27.14■■□□□ 1.93
DDX39A-206ENST00000587730 FANCD2Q9BXW9 1451 aa27.12■■□□□ 1.93
DDX39A-206ENST00000587730 ERCC6Q03468 1493 aa27.12■■□□□ 1.93
DDX39A-206ENST00000587730 KIF21AQ7Z4S6 1674 aa27.11■■□□□ 1.93
DDX39A-206ENST00000587730 IGF1RP08069 1367 aa27.1■■□□□ 1.93
DDX39A-206ENST00000587730 YTHDC1Q96MU7 727 aaKnown RBP27.06■■□□□ 1.92
DDX39A-206ENST00000587730 TIAM1Q13009 1591 aa27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms