RNA–Protein interactions for RNA: ENST00000508474.5

UBE2D3-224, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 4,819 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-224ENST00000508474 PELP1Q8IZL8 1130 aaKnown RBP11.97□□□□□ -0.49
UBE2D3-224ENST00000508474 MYT1Q01538 1121 aa11.92□□□□□ -0.5
UBE2D3-224ENST00000508474 SUPT5HO00267 1087 aaKnown RBP11.6□□□□□ -0.55
UBE2D3-224ENST00000508474 DCAF8L2P0C7V8 631 aa11.58□□□□□ -0.55
UBE2D3-224ENST00000508474 NISCHQ9Y2I1 1504 aa11.51□□□□□ -0.57
UBE2D3-224ENST00000508474 CENPBP07199 599 aaPredicted RBP11.5□□□□□ -0.57
UBE2D3-224ENST00000508474 ZEB1P37275 1124 aaPredicted RBP11.48□□□□□ -0.57
UBE2D3-224ENST00000508474 PCGF6Q9BYE7 350 aa11.39□□□□□ -0.59
UBE2D3-224ENST00000508474 CCER1Q8TC90 406 aaPredicted RBP11.3□□□□□ -0.6
UBE2D3-224ENST00000508474 ERICH6Q7L0X2 663 aa11.29□□□□□ -0.6
UBE2D3-224ENST00000508474 SHROOM4Q9ULL8 1493 aa11.22□□□□□ -0.61
UBE2D3-224ENST00000508474 HRCP23327 699 aa11.2□□□□□ -0.62
UBE2D3-224ENST00000508474 APLP2Q06481 763 aa11.09□□□□□ -0.63
UBE2D3-224ENST00000508474 NEFLP07196 543 aa11.02□□□□□ -0.64
UBE2D3-224ENST00000508474 EHMT2Q96KQ7 1210 aa11.02□□□□□ -0.65
UBE2D3-224ENST00000508474 TRIM26Q12899 539 aaPredicted RBP10.98□□□□□ -0.65
UBE2D3-224ENST00000508474 YTHDC1Q96MU7 727 aaKnown RBP10.92□□□□□ -0.66
UBE2D3-224ENST00000508474 TTBK1Q5TCY1 1321 aaPredicted RBP10.89□□□□□ -0.67
UBE2D3-224ENST00000508474 FAM9AQ8IZU1 332 aaPredicted RBP10.88□□□□□ -0.67
UBE2D3-224ENST00000508474 TRIM41Q8WV44 630 aa10.81□□□□□ -0.68
UBE2D3-224ENST00000508474 PPARGC1BQ86YN6 1023 aaKnown RBP10.75□□□□□ -0.69
UBE2D3-224ENST00000508474 DIEXFQ68CQ4 756 aaKnown RBP10.68□□□□□ -0.7
UBE2D3-224ENST00000508474 GTF3C3Q9Y5Q9 886 aa10.66□□□□□ -0.7
UBE2D3-224ENST00000508474 RTL5Q5HYW3 569 aaPredicted RBP10.65□□□□□ -0.7
UBE2D3-224ENST00000508474 DAXXQ9UER7 740 aaPredicted RBP10.64□□□□□ -0.71
UBE2D3-224ENST00000508474 CHIC1Q5VXU3 224 aa10.61□□□□□ -0.71
UBE2D3-224ENST00000508474 ACIN1Q9UKV3 1341 aaKnown RBP10.6□□□□□ -0.71
UBE2D3-224ENST00000508474 UBTFP17480 764 aaKnown RBP10.58□□□□□ -0.72
UBE2D3-224ENST00000508474 CLSPNQ9HAW4 1339 aa10.53□□□□□ -0.72
UBE2D3-224ENST00000508474 LOC105371045A0A1W2PR82 267 aa10.49□□□□□ -0.73
UBE2D3-224ENST00000508474 MYT1LQ9UL68 1186 aa10.47□□□□□ -0.73
UBE2D3-224ENST00000508474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.44□□□□□ -0.74
UBE2D3-224ENST00000508474 RANGAP1P46060 587 aaPredicted RBP10.43□□□□□ -0.74
UBE2D3-224ENST00000508474 CDK11AQ9UQ88 783 aaPredicted RBP10.43□□□□□ -0.74
UBE2D3-224ENST00000508474 ZNF316A6NFI3 1004 aaPredicted RBP10.42□□□□□ -0.74
UBE2D3-224ENST00000508474 HNRNPUL2Q1KMD3 747 aaKnown RBP10.36□□□□□ -0.75
UBE2D3-224ENST00000508474 ATP1B4Q9UN42 357 aaPredicted RBP10.35□□□□□ -0.75
UBE2D3-224ENST00000508474 SCAF1Q9H7N4 1312 aaKnown RBP10.34□□□□□ -0.75
UBE2D3-224ENST00000508474 BCANQ96GW7 911 aa10.33□□□□□ -0.76
UBE2D3-224ENST00000508474 GLIPR1L2Q4G1C9 344 aa10.31□□□□□ -0.76
UBE2D3-224ENST00000508474 DCAF1Q9Y4B6 1507 aa10.29□□□□□ -0.76
UBE2D3-224ENST00000508474 ANP32AP39687 249 aaKnown RBP10.26□□□□□ -0.77
UBE2D3-224ENST00000508474 ANP32CO43423 234 aa10.26□□□□□ -0.77
UBE2D3-224ENST00000508474 NEUROD1Q13562 356 aa10.26□□□□□ -0.77
UBE2D3-224ENST00000508474 ITGAEP38570 1179 aa10.22□□□□□ -0.77
UBE2D3-224ENST00000508474 EIF5BO60841 1220 aaKnown RBP10.2□□□□□ -0.78
UBE2D3-224ENST00000508474 ANP32EQ9BTT0 268 aa10.19□□□□□ -0.78
UBE2D3-224ENST00000508474 POLR3GLQ9BT43 218 aa10.18□□□□□ -0.78
UBE2D3-224ENST00000508474 FKBP8Q14318 412 aa10.14□□□□□ -0.79
UBE2D3-224ENST00000508474 ZBTB47Q9UFB7 747 aaPredicted RBP10.05□□□□□ -0.8
UBE2D3-224ENST00000508474 BCL11AQ9H165 835 aa10.05□□□□□ -0.8
UBE2D3-224ENST00000508474 CNGB1Q14028 1251 aaPredicted RBP10.03□□□□□ -0.8
UBE2D3-224ENST00000508474 ANP32BQ92688 251 aaKnown RBP10.03□□□□□ -0.8
UBE2D3-224ENST00000508474 NPM2Q86SE8 214 aaKnown RBP10□□□□□ -0.81
UBE2D3-224ENST00000508474 CCDC180Q9P1Z9 1646 aa10□□□□□ -0.81
UBE2D3-224ENST00000508474 NBR1Q14596 966 aa10□□□□□ -0.81
UBE2D3-224ENST00000508474 FAM50AQ14320 339 aaKnown RBP9.99□□□□□ -0.81
UBE2D3-224ENST00000508474 MIER1Q8N108 512 aa9.97□□□□□ -0.81
UBE2D3-224ENST00000508474 HNRNPUQ00839 825 aaKnown RBP eCLIP9.94□□□□□ -0.82
UBE2D3-224ENST00000508474 TRIM52Q96A61 297 aa9.93□□□□□ -0.82
UBE2D3-224ENST00000508474 CCDC136Q96JN2 1154 aa9.91□□□□□ -0.82
UBE2D3-224ENST00000508474 UPF2Q9HAU5 1272 aaKnown RBP9.91□□□□□ -0.82
UBE2D3-224ENST00000508474 DDRGK1Q96HY6 314 aa9.9□□□□□ -0.82
UBE2D3-224ENST00000508474 CANXP27824 592 aaKnown RBP9.9□□□□□ -0.83
UBE2D3-224ENST00000508474 ERICH6BQ5W0A0 696 aa9.89□□□□□ -0.83
UBE2D3-224ENST00000508474 PPM1GO15355 546 aaPredicted RBP9.87□□□□□ -0.83
UBE2D3-224ENST00000508474 DDX10Q13206 875 aaKnown RBP9.86□□□□□ -0.83
UBE2D3-224ENST00000508474 SUPT16HQ9Y5B9 1047 aaKnown RBP9.85□□□□□ -0.83
UBE2D3-224ENST00000508474 CSRNP3Q8WYN3 585 aa9.85□□□□□ -0.83
UBE2D3-224ENST00000508474 TONSLQ96HA7 1378 aa9.84□□□□□ -0.83
UBE2D3-224ENST00000508474 TNNT2P45379 298 aaPredicted RBP9.83□□□□□ -0.84
UBE2D3-224ENST00000508474 NEFMP07197 916 aa9.82□□□□□ -0.84
UBE2D3-224ENST00000508474 NOP58Q9Y2X3 529 aaKnown RBP9.82□□□□□ -0.84
UBE2D3-224ENST00000508474 HSP90AA1P07900 732 aaKnown RBP9.81□□□□□ -0.84
UBE2D3-224ENST00000508474 SLC4A1APQ9BWU0 796 aaKnown RBP9.81□□□□□ -0.84
UBE2D3-224ENST00000508474 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.8□□□□□ -0.84
UBE2D3-224ENST00000508474 DEKP35659 375 aaKnown RBP9.79□□□□□ -0.84
UBE2D3-224ENST00000508474 FAM9BQ8IZU0 186 aa9.79□□□□□ -0.84
UBE2D3-224ENST00000508474 TRIM44Q96DX7 344 aaPredicted RBP9.79□□□□□ -0.84
UBE2D3-224ENST00000508474 MYO15BQ96JP2 1530 aa9.78□□□□□ -0.84
UBE2D3-224ENST00000508474 BECN1Q14457 450 aa9.78□□□□□ -0.84
UBE2D3-224ENST00000508474 ZNF326Q5BKZ1 582 aaKnown RBP9.78□□□□□ -0.84
UBE2D3-224ENST00000508474 PPP4R2Q9NY27 417 aa9.77□□□□□ -0.85
UBE2D3-224ENST00000508474 MRS2Q9HD23 443 aa9.74□□□□□ -0.85
UBE2D3-224ENST00000508474 RBM19Q9Y4C8 960 aaKnown RBP9.74□□□□□ -0.85
UBE2D3-224ENST00000508474 IRX6P78412 446 aaPredicted RBP9.73□□□□□ -0.85
UBE2D3-224ENST00000508474 NAP1L5Q96NT1 182 aaPredicted RBP9.72□□□□□ -0.85
UBE2D3-224ENST00000508474 TMC1Q8TDI8 760 aa9.71□□□□□ -0.85
UBE2D3-224ENST00000508474 RTN4Q9NQC3 1192 aaKnown RBP9.71□□□□□ -0.85
UBE2D3-224ENST00000508474 ARXQ96QS3 562 aa9.69□□□□□ -0.86
UBE2D3-224ENST00000508474 TSHZ2Q9NRE2 1034 aa9.69□□□□□ -0.86
UBE2D3-224ENST00000508474 NCLP19338 710 aaKnown RBP9.68□□□□□ -0.86
UBE2D3-224ENST00000508474 GOLGA6L22H0YM25 854 aa9.68□□□□□ -0.86
UBE2D3-224ENST00000508474 L1TD1Q5T7N2 865 aaKnown RBP9.67□□□□□ -0.86
UBE2D3-224ENST00000508474 LAS1LQ9Y4W2 734 aaKnown RBP9.64□□□□□ -0.87
UBE2D3-224ENST00000508474 CCER2I3L3R5 266 aa9.63□□□□□ -0.87
UBE2D3-224ENST00000508474 EIF4G2P78344 907 aaKnown RBP eCLIP9.63□□□□□ -0.87
UBE2D3-224ENST00000508474 CDK11BP21127 795 aaKnown RBP9.62□□□□□ -0.87
UBE2D3-224ENST00000508474 ZCCHC6Q5VYS8 1495 aaKnown RBP9.61□□□□□ -0.87
UBE2D3-224ENST00000508474 EEA1Q15075 1411 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms