RNA–Protein interactions for RNA: ENST00000640615.1

HLA-B-258, Transcript of major histocompatibility complex, class I, B, humanhuman

BASIC

Gene HLA-B, Length 240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-B-258ENST00000640615 NISCHQ9Y2I1 1504 aa20.34■□□□□ 0.85
HLA-B-258ENST00000640615 CCDC180Q9P1Z9 1646 aa17.82■□□□□ 0.44
HLA-B-258ENST00000640615 ABCC9O60706 1549 aa17.7■□□□□ 0.42
HLA-B-258ENST00000640615 ZCCHC6Q5VYS8 1495 aaKnown RBP17.02■□□□□ 0.32
HLA-B-258ENST00000640615 DCAF8L2P0C7V8 631 aa17■□□□□ 0.31
HLA-B-258ENST00000640615 RB1CC1Q8TDY2 1594 aa16.89■□□□□ 0.29
HLA-B-258ENST00000640615 DCAF1Q9Y4B6 1507 aa16.8■□□□□ 0.28
HLA-B-258ENST00000640615 NACADO15069 1562 aa16.78■□□□□ 0.28
HLA-B-258ENST00000640615 DNAJC5BQ9UF47 199 aa16.74■□□□□ 0.27
HLA-B-258ENST00000640615 MYO15BQ96JP2 1530 aa16.71■□□□□ 0.27
HLA-B-258ENST00000640615 UNC13AQ9UPW8 1703 aa16.54■□□□□ 0.24
HLA-B-258ENST00000640615 SHROOM4Q9ULL8 1493 aa16.45■□□□□ 0.22
HLA-B-258ENST00000640615 BICRAQ9NZM4 1560 aa16.45■□□□□ 0.22
HLA-B-258ENST00000640615 PABPN1Q86U42 306 aaKnown RBP eCLIP16.42■□□□□ 0.22
HLA-B-258ENST00000640615 SCRIBQ14160 1630 aa16.38■□□□□ 0.21
HLA-B-258ENST00000640615 CC2D2AQ9P2K1 1620 aa16.05■□□□□ 0.16
HLA-B-258ENST00000640615 EIF4G1Q04637 1599 aaKnown RBP16.01■□□□□ 0.15
HLA-B-258ENST00000640615 CECR2Q9BXF3 1484 aa15.99■□□□□ 0.15
HLA-B-258ENST00000640615 BAZ1AQ9NRL2 1556 aaPredicted RBP15.73■□□□□ 0.11
HLA-B-258ENST00000640615 SUPT5HO00267 1087 aaKnown RBP15.72■□□□□ 0.11
HLA-B-258ENST00000640615 MROH2BQ7Z745 1585 aa15.7■□□□□ 0.1
HLA-B-258ENST00000640615 RSF1Q96T23 1441 aaPredicted RBP15.69■□□□□ 0.1
HLA-B-258ENST00000640615 SMARCA4P51532 1647 aa15.67■□□□□ 0.1
HLA-B-258ENST00000640615 WIZO95785 1651 aa15.54■□□□□ 0.08
HLA-B-258ENST00000640615 ATAD2BQ9ULI0 1458 aa15.52■□□□□ 0.08
HLA-B-258ENST00000640615 NCAPD3P42695 1498 aa15.51■□□□□ 0.07
HLA-B-258ENST00000640615 SMARCA2P51531 1590 aa15.49■□□□□ 0.07
HLA-B-258ENST00000640615 PEG3Q9GZU2 1588 aa15.49■□□□□ 0.07
HLA-B-258ENST00000640615 DNAJC5Q9H3Z4 198 aa15.46■□□□□ 0.07
HLA-B-258ENST00000640615 BAZ1BQ9UIG0 1483 aaKnown RBP15.42■□□□□ 0.06
HLA-B-258ENST00000640615 CUX2O14529 1486 aa15.4■□□□□ 0.06
HLA-B-258ENST00000640615 TOP2AP11388 1531 aaKnown RBP15.39■□□□□ 0.05
HLA-B-258ENST00000640615 HMGXB3Q12766 1538 aa15.38■□□□□ 0.05
HLA-B-258ENST00000640615 ERCC6Q03468 1493 aa15.27■□□□□ 0.03
HLA-B-258ENST00000640615 CCDC88BA6NC98 1476 aa15.25■□□□□ 0.03
HLA-B-258ENST00000640615 NESP48681 1621 aa15.21■□□□□ 0.02
HLA-B-258ENST00000640615 LAMC3Q9Y6N6 1575 aa15.15■□□□□ 0.02
HLA-B-258ENST00000640615 THOC2Q8NI27 1593 aaKnown RBP15.15■□□□□ 0.02
HLA-B-258ENST00000640615 KIF21AQ7Z4S6 1674 aa15.04■□□□□ -0
HLA-B-258ENST00000640615 CADPSQ9ULU8 1353 aa15.04■□□□□ -0
HLA-B-258ENST00000640615 PDS5BQ9NTI5 1447 aa15.02■□□□□ -0
HLA-B-258ENST00000640615 CFTRP13569 1480 aa15.01□□□□□ -0.01
HLA-B-258ENST00000640615 WDR62O43379 1518 aa14.92□□□□□ -0.02
HLA-B-258ENST00000640615 MRC2Q9UBG0 1479 aa14.9□□□□□ -0.02
HLA-B-258ENST00000640615 CHIC1Q5VXU3 224 aa14.87□□□□□ -0.03
HLA-B-258ENST00000640615 FANCD2Q9BXW9 1451 aa14.87□□□□□ -0.03
HLA-B-258ENST00000640615 PRDM2Q13029 1718 aa14.82□□□□□ -0.04
HLA-B-258ENST00000640615 ABCC8Q09428 1581 aa14.81□□□□□ -0.04
HLA-B-258ENST00000640615 CEP164Q9UPV0 1460 aa14.81□□□□□ -0.04
HLA-B-258ENST00000640615 TRIM41Q8WV44 630 aa14.8□□□□□ -0.04
HLA-B-258ENST00000640615 WRNQ14191 1432 aaPredicted RBP eCLIP14.78□□□□□ -0.04
HLA-B-258ENST00000640615 CUX1P39880 1505 aa14.7□□□□□ -0.06
HLA-B-258ENST00000640615 URB2Q14146 1524 aaKnown RBP14.7□□□□□ -0.06
HLA-B-258ENST00000640615 SYNJ1O43426 1573 aa14.69□□□□□ -0.06
HLA-B-258ENST00000640615 TOPBP1Q92547 1522 aa14.66□□□□□ -0.06
HLA-B-258ENST00000640615 DNMBPQ6XZF7 1577 aa14.65□□□□□ -0.06
HLA-B-258ENST00000640615 TOP2BQ02880 1626 aa14.65□□□□□ -0.06
HLA-B-258ENST00000640615 BIVM-ERCC5R4GMW8 1640 aa14.63□□□□□ -0.07
HLA-B-258ENST00000640615 FGD5Q6ZNL6 1462 aa14.6□□□□□ -0.07
HLA-B-258ENST00000640615 OSCARQ8IYS5 282 aa14.59□□□□□ -0.07
HLA-B-258ENST00000640615 POLA1P09884 1462 aaPredicted RBP14.56□□□□□ -0.08
HLA-B-258ENST00000640615 SOGA1O94964 1423 aa14.55□□□□□ -0.08
HLA-B-258ENST00000640615 IFT140Q96RY7 1462 aa14.54□□□□□ -0.08
HLA-B-258ENST00000640615 RAD54L2Q9Y4B4 1467 aa14.53□□□□□ -0.08
HLA-B-258ENST00000640615 FAM9AQ8IZU1 332 aaPredicted RBP14.53□□□□□ -0.08
HLA-B-258ENST00000640615 ZNF608Q9ULD9 1512 aaPredicted RBP14.51□□□□□ -0.09
HLA-B-258ENST00000640615 RUSC2Q8N2Y8 1516 aa14.46□□□□□ -0.09
HLA-B-258ENST00000640615 RIMBP3CA6NJZ7 1639 aa14.46□□□□□ -0.09
HLA-B-258ENST00000640615 RIMBP3BA6NNM3 1639 aa14.46□□□□□ -0.09
HLA-B-258ENST00000640615 RIMBP3Q9UFD9 1639 aa14.46□□□□□ -0.09
HLA-B-258ENST00000640615 KIF27Q86VH2 1401 aa14.46□□□□□ -0.09
HLA-B-258ENST00000640615 ABCA10Q8WWZ4 1543 aa14.46□□□□□ -0.1
HLA-B-258ENST00000640615 EIF4G3O43432 1585 aaKnown RBP14.44□□□□□ -0.1
HLA-B-258ENST00000640615 TDRD9Q8NDG6 1382 aaKnown RBP14.44□□□□□ -0.1
HLA-B-258ENST00000640615 TARBP1Q13395 1621 aaKnown RBP14.44□□□□□ -0.1
HLA-B-258ENST00000640615 EEA1Q15075 1411 aa14.42□□□□□ -0.1
HLA-B-258ENST00000640615 CSRNP3Q8WYN3 585 aa14.42□□□□□ -0.1
HLA-B-258ENST00000640615 ARHGEF11O15085 1522 aa14.4□□□□□ -0.1
HLA-B-258ENST00000640615 AQRO60306 1485 aaKnown RBP eCLIP14.38□□□□□ -0.116e-7■■■■■ 27.8
HLA-B-258ENST00000640615 GAPVD1Q14C86 1478 aa14.37□□□□□ -0.11
HLA-B-258ENST00000640615 WDR97A6NE52 1622 aa14.37□□□□□ -0.11
HLA-B-258ENST00000640615 IGF1RP08069 1367 aa14.35□□□□□ -0.11
HLA-B-258ENST00000640615 EHMT2Q96KQ7 1210 aa14.34□□□□□ -0.11
HLA-B-258ENST00000640615 CHD1O14646 1710 aa14.34□□□□□ -0.11
HLA-B-258ENST00000640615 ABCA5Q8WWZ7 1642 aa14.33□□□□□ -0.12
HLA-B-258ENST00000640615 LOC105371045A0A1W2PR82 267 aa14.31□□□□□ -0.12
HLA-B-258ENST00000640615 GRIN2BQ13224 1484 aa14.3□□□□□ -0.12
HLA-B-258ENST00000640615 CARMIL1Q5VZK9 1371 aa14.29□□□□□ -0.12
HLA-B-258ENST00000640615 ERICH3Q5RHP9 1530 aa14.28□□□□□ -0.12
HLA-B-258ENST00000640615 ARAP1Q96P48 1450 aa14.25□□□□□ -0.13
HLA-B-258ENST00000640615 PRXQ9BXM0 1461 aa14.25□□□□□ -0.13
HLA-B-258ENST00000640615 PBRM1Q86U86 1689 aa14.23□□□□□ -0.13
HLA-B-258ENST00000640615 CLASP1Q7Z460 1538 aa14.23□□□□□ -0.13
HLA-B-258ENST00000640615 SNAPC4Q5SXM2 1469 aa14.23□□□□□ -0.13
HLA-B-258ENST00000640615 UBTFP17480 764 aaKnown RBP14.22□□□□□ -0.13
HLA-B-258ENST00000640615 RAPGEF2Q9Y4G8 1499 aa14.22□□□□□ -0.13
HLA-B-258ENST00000640615 FHAD1B1AJZ9 1412 aa14.22□□□□□ -0.13
HLA-B-258ENST00000640615 GOLGA3Q08378 1498 aa14.21□□□□□ -0.13
HLA-B-258ENST00000640615 MAGI1Q96QZ7 1491 aaPredicted RBP14.21□□□□□ -0.13
HLA-B-258ENST00000640615 KIF21BO75037 1637 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms