RNA–Protein interactions for RNA: ENST00000618836.4

UBE2D3-233, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-233ENST00000618836 AEBP2Q6ZN18 517 aaPredicted RBP10.13□□□□□ -0.79
UBE2D3-233ENST00000618836 CHIC1Q5VXU3 224 aa9.9□□□□□ -0.83
UBE2D3-233ENST00000618836 PHF23Q9BUL5 403 aaPredicted RBP9.07□□□□□ -0.96
UBE2D3-233ENST00000618836 DNAJC5Q9H3Z4 198 aa8.75□□□□□ -1.01
UBE2D3-233ENST00000618836 DNAJC5BQ9UF47 199 aa8.4□□□□□ -1.06
UBE2D3-233ENST00000618836 SLC24A1O60721 1099 aa8.17□□□□□ -1.1
UBE2D3-233ENST00000618836 ADRA2BP18089 450 aa8.1□□□□□ -1.11
UBE2D3-233ENST00000618836 CCDC180Q9P1Z9 1646 aa8.08□□□□□ -1.12
UBE2D3-233ENST00000618836 PLPPR3Q6T4P5 718 aa8.07□□□□□ -1.12
UBE2D3-233ENST00000618836 CUX2O14529 1486 aa8.03□□□□□ -1.12
UBE2D3-233ENST00000618836 SENP3Q9H4L4 574 aaPredicted RBP8.02□□□□□ -1.13
UBE2D3-233ENST00000618836 SHROOM4Q9ULL8 1493 aa7.98□□□□□ -1.13
UBE2D3-233ENST00000618836 PPP6R1Q9UPN7 881 aa7.97□□□□□ -1.13
UBE2D3-233ENST00000618836 ABCC9O60706 1549 aa7.96□□□□□ -1.14
UBE2D3-233ENST00000618836 NISCHQ9Y2I1 1504 aa7.95□□□□□ -1.14
UBE2D3-233ENST00000618836 UNC13AQ9UPW8 1703 aa7.85□□□□□ -1.15
UBE2D3-233ENST00000618836 KCNA4P22459 653 aa7.84□□□□□ -1.15
UBE2D3-233ENST00000618836 EHMT2Q96KQ7 1210 aa7.84□□□□□ -1.15
UBE2D3-233ENST00000618836 RB1CC1Q8TDY2 1594 aa7.78□□□□□ -1.16
UBE2D3-233ENST00000618836 FOXD1Q16676 465 aa7.73□□□□□ -1.17
UBE2D3-233ENST00000618836 BICRAQ9NZM4 1560 aa7.7□□□□□ -1.18
UBE2D3-233ENST00000618836 TTBK1Q5TCY1 1321 aaPredicted RBP7.66□□□□□ -1.18
UBE2D3-233ENST00000618836 MYT1Q01538 1121 aa7.66□□□□□ -1.18
UBE2D3-233ENST00000618836 CC2D2AQ9P2K1 1620 aa7.64□□□□□ -1.19
UBE2D3-233ENST00000618836 NACADO15069 1562 aa7.61□□□□□ -1.19
UBE2D3-233ENST00000618836 DAXXQ9UER7 740 aaPredicted RBP7.61□□□□□ -1.19
UBE2D3-233ENST00000618836 MYO15BQ96JP2 1530 aa7.56□□□□□ -1.2
UBE2D3-233ENST00000618836 CECR2Q9BXF3 1484 aa7.54□□□□□ -1.2
UBE2D3-233ENST00000618836 PELP1Q8IZL8 1130 aaKnown RBP7.53□□□□□ -1.2
UBE2D3-233ENST00000618836 APLP2Q06481 763 aa7.5□□□□□ -1.21
UBE2D3-233ENST00000618836 CSRNP3Q8WYN3 585 aa7.49□□□□□ -1.21
UBE2D3-233ENST00000618836 THOC2Q8NI27 1593 aaKnown RBP7.45□□□□□ -1.22
UBE2D3-233ENST00000618836 EIF4G1Q04637 1599 aaKnown RBP7.41□□□□□ -1.22
UBE2D3-233ENST00000618836 ZBTB22O15209 634 aa7.4□□□□□ -1.23
UBE2D3-233ENST00000618836 PRKCSHP14314 528 aaPredicted RBP7.38□□□□□ -1.23
UBE2D3-233ENST00000618836 NCBP3Q53F19 620 aaKnown RBP7.33□□□□□ -1.24
UBE2D3-233ENST00000618836 ERCC6L2Q5T890 1561 aa7.32□□□□□ -1.24
UBE2D3-233ENST00000618836 ERICH6Q7L0X2 663 aa7.32□□□□□ -1.24
UBE2D3-233ENST00000618836 RIMBP3CA6NJZ7 1639 aa7.3□□□□□ -1.24
UBE2D3-233ENST00000618836 RIMBP3BA6NNM3 1639 aa7.3□□□□□ -1.24
UBE2D3-233ENST00000618836 RIMBP3Q9UFD9 1639 aa7.3□□□□□ -1.24
UBE2D3-233ENST00000618836 PPP4R3CPQ6ZMV5 832 aa7.3□□□□□ -1.24
UBE2D3-233ENST00000618836 PIAS4Q8N2W9 510 aaPredicted RBP7.29□□□□□ -1.24
UBE2D3-233ENST00000618836 ILDR1Q86SU0 546 aaPredicted RBP7.29□□□□□ -1.24
UBE2D3-233ENST00000618836 SLC4A1APQ9BWU0 796 aaKnown RBP7.27□□□□□ -1.25
UBE2D3-233ENST00000618836 NPM3O75607 178 aaKnown RBP7.24□□□□□ -1.25
UBE2D3-233ENST00000618836 BAZ1AQ9NRL2 1556 aaPredicted RBP7.23□□□□□ -1.25
UBE2D3-233ENST00000618836 POTEDQ86YR6 584 aa7.17□□□□□ -1.26
UBE2D3-233ENST00000618836 RTN4Q9NQC3 1192 aaKnown RBP7.14□□□□□ -1.27
UBE2D3-233ENST00000618836 MAPK8IP2Q13387 824 aaPredicted RBP7.13□□□□□ -1.27
UBE2D3-233ENST00000618836 ARXQ96QS3 562 aa7.13□□□□□ -1.27
UBE2D3-233ENST00000618836 TRIM41Q8WV44 630 aa7.08□□□□□ -1.28
UBE2D3-233ENST00000618836 PABPN1Q86U42 306 aaKnown RBP eCLIP7.07□□□□□ -1.28
UBE2D3-233ENST00000618836 WDR62O43379 1518 aa7.06□□□□□ -1.28
UBE2D3-233ENST00000618836 SOCS7O14512 581 aa7.04□□□□□ -1.28
UBE2D3-233ENST00000618836 AMER1Q5JTC6 1135 aaPredicted RBP7.04□□□□□ -1.28
UBE2D3-233ENST00000618836 ARHGEF11O15085 1522 aa7.04□□□□□ -1.28
UBE2D3-233ENST00000618836 LAMC3Q9Y6N6 1575 aa7.02□□□□□ -1.29
UBE2D3-233ENST00000618836 KIF21AQ7Z4S6 1674 aa6.96□□□□□ -1.3
UBE2D3-233ENST00000618836 HMGXB3Q12766 1538 aa6.95□□□□□ -1.3
UBE2D3-233ENST00000618836 KDM6BO15054 1643 aa6.95□□□□□ -1.3
UBE2D3-233ENST00000618836 ERCC6Q03468 1493 aa6.95□□□□□ -1.3
UBE2D3-233ENST00000618836 DCAF1Q9Y4B6 1507 aa6.95□□□□□ -1.3
UBE2D3-233ENST00000618836 LMTK3Q96Q04 1460 aa6.91□□□□□ -1.3
UBE2D3-233ENST00000618836 TIMELESSQ9UNS1 1208 aa6.91□□□□□ -1.3
UBE2D3-233ENST00000618836 NCAPD3P42695 1498 aa6.91□□□□□ -1.3
UBE2D3-233ENST00000618836 FBXO41Q8TF61 875 aa6.91□□□□□ -1.3
UBE2D3-233ENST00000618836 RSF1Q96T23 1441 aaPredicted RBP6.9□□□□□ -1.3
UBE2D3-233ENST00000618836 ARAP1Q96P48 1450 aa6.89□□□□□ -1.31
UBE2D3-233ENST00000618836 KIF13AQ9H1H9 1805 aa6.88□□□□□ -1.31
UBE2D3-233ENST00000618836 HECW2Q9P2P5 1572 aa6.87□□□□□ -1.31
UBE2D3-233ENST00000618836 EIF5BO60841 1220 aaKnown RBP6.87□□□□□ -1.31
UBE2D3-233ENST00000618836 CNKSR2Q8WXI2 1034 aa6.85□□□□□ -1.31
UBE2D3-233ENST00000618836 SLC4A2P04920 1241 aa6.84□□□□□ -1.31
UBE2D3-233ENST00000618836 SPATA31D1Q6ZQQ2 1576 aa6.84□□□□□ -1.31
UBE2D3-233ENST00000618836 RANGAP1P46060 587 aaPredicted RBP6.83□□□□□ -1.32
UBE2D3-233ENST00000618836 SMARCA2P51531 1590 aa6.82□□□□□ -1.32
UBE2D3-233ENST00000618836 HOMEZQ8IX15 550 aa6.8□□□□□ -1.32
UBE2D3-233ENST00000618836 FOXD4L1Q9NU39 408 aa6.78□□□□□ -1.32
UBE2D3-233ENST00000618836 PEG3Q9GZU2 1588 aa6.78□□□□□ -1.32
UBE2D3-233ENST00000618836 CLASP1Q7Z460 1538 aa6.77□□□□□ -1.33
UBE2D3-233ENST00000618836 MRC2Q9UBG0 1479 aa6.77□□□□□ -1.33
UBE2D3-233ENST00000618836 KLHL34Q8N239 644 aa6.75□□□□□ -1.33
UBE2D3-233ENST00000618836 OSCARQ8IYS5 282 aa6.74□□□□□ -1.33
UBE2D3-233ENST00000618836 NESP48681 1621 aa6.74□□□□□ -1.33
UBE2D3-233ENST00000618836 TAOK2Q9UL54 1235 aa6.74□□□□□ -1.33
UBE2D3-233ENST00000618836 TULP1O00294 542 aaPredicted RBP6.73□□□□□ -1.33
UBE2D3-233ENST00000618836 WDR97A6NE52 1622 aa6.72□□□□□ -1.33
UBE2D3-233ENST00000618836 ATF5Q9Y2D1 282 aaPredicted RBP6.72□□□□□ -1.33
UBE2D3-233ENST00000618836 BCL11AQ9H165 835 aa6.68□□□□□ -1.34
UBE2D3-233ENST00000618836 CHD1O14646 1710 aa6.68□□□□□ -1.34
UBE2D3-233ENST00000618836 PRDM2Q13029 1718 aa6.66□□□□□ -1.34
UBE2D3-233ENST00000618836 FKBP8Q14318 412 aa6.65□□□□□ -1.34
UBE2D3-233ENST00000618836 ILDR2Q71H61 639 aa6.65□□□□□ -1.34
UBE2D3-233ENST00000618836 IQSEC2Q5JU85 1478 aa6.63□□□□□ -1.35
UBE2D3-233ENST00000618836 KDM4FA0A1W2PPD8 638 aa6.63□□□□□ -1.35
UBE2D3-233ENST00000618836 MSH5O43196 834 aa6.63□□□□□ -1.35
UBE2D3-233ENST00000618836 RNF216Q9NWF9 866 aaPredicted RBP6.63□□□□□ -1.35
UBE2D3-233ENST00000618836 PDS5BQ9NTI5 1447 aa6.62□□□□□ -1.35
UBE2D3-233ENST00000618836 BCANQ96GW7 911 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms