RNA–Protein interactions for RNA: ENST00000588692.5

DDX39A-208, Transcript of DExD-box helicase 39A, humanhuman

TSL 5

Gene DDX39A, Length 1,478 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-208ENST00000588692 NISCHQ9Y2I1 1504 aa35.66■■■■□ 3.3
DDX39A-208ENST00000588692 CCDC180Q9P1Z9 1646 aa31.92■■■□□ 2.7
DDX39A-208ENST00000588692 ABCC9O60706 1549 aa31.38■■■□□ 2.61
DDX39A-208ENST00000588692 RB1CC1Q8TDY2 1594 aa30.15■■■□□ 2.42
DDX39A-208ENST00000588692 NACADO15069 1562 aa30.03■■■□□ 2.4
DDX39A-208ENST00000588692 MYO15BQ96JP2 1530 aa29.8■■■□□ 2.36
DDX39A-208ENST00000588692 DCAF8L2P0C7V8 631 aa29.79■■■□□ 2.36
DDX39A-208ENST00000588692 ZCCHC6Q5VYS8 1495 aaKnown RBP29.66■■■□□ 2.34
DDX39A-208ENST00000588692 DCAF1Q9Y4B6 1507 aa29.54■■■□□ 2.32
DDX39A-208ENST00000588692 UNC13AQ9UPW8 1703 aa29.46■■■□□ 2.31
DDX39A-208ENST00000588692 PABPN1Q86U42 306 aaKnown RBP eCLIP29.21■■■□□ 2.271e-10■■■■■ 41
DDX39A-208ENST00000588692 BICRAQ9NZM4 1560 aa29.2■■■□□ 2.27
DDX39A-208ENST00000588692 SCRIBQ14160 1630 aa29.01■■■□□ 2.24
DDX39A-208ENST00000588692 DNAJC5BQ9UF47 199 aa28.99■■■□□ 2.23
DDX39A-208ENST00000588692 SHROOM4Q9ULL8 1493 aa28.97■■■□□ 2.23
DDX39A-208ENST00000588692 EIF4G1Q04637 1599 aaKnown RBP28.47■■■□□ 2.15
DDX39A-208ENST00000588692 CC2D2AQ9P2K1 1620 aa28.42■■■□□ 2.14
DDX39A-208ENST00000588692 CECR2Q9BXF3 1484 aa28.26■■■□□ 2.11
DDX39A-208ENST00000588692 SMARCA4P51532 1647 aa27.75■■■□□ 2.03
DDX39A-208ENST00000588692 BAZ1AQ9NRL2 1556 aaPredicted RBP27.7■■■□□ 2.02
DDX39A-208ENST00000588692 NCAPD3P42695 1498 aa27.68■■■□□ 2.02
DDX39A-208ENST00000588692 ATAD2BQ9ULI0 1458 aa27.65■■■□□ 2.02
DDX39A-208ENST00000588692 SMARCA2P51531 1590 aa27.64■■■□□ 2.02
DDX39A-208ENST00000588692 HMGXB3Q12766 1538 aa27.57■■■□□ 2
DDX39A-208ENST00000588692 PEG3Q9GZU2 1588 aa27.51■■■□□ 2
DDX39A-208ENST00000588692 MROH2BQ7Z745 1585 aa27.44■■□□□ 1.98
DDX39A-208ENST00000588692 BAZ1BQ9UIG0 1483 aaKnown RBP27.41■■□□□ 1.98
DDX39A-208ENST00000588692 WIZO95785 1651 aa27.15■■□□□ 1.94
DDX39A-208ENST00000588692 ERCC6Q03468 1493 aa27.1■■□□□ 1.93
DDX39A-208ENST00000588692 NESP48681 1621 aa27.06■■□□□ 1.92
DDX39A-208ENST00000588692 LAMC3Q9Y6N6 1575 aa27.05■■□□□ 1.92
DDX39A-208ENST00000588692 RSF1Q96T23 1441 aaPredicted RBP27.02■■□□□ 1.92
DDX39A-208ENST00000588692 CUX2O14529 1486 aa26.97■■□□□ 1.91
DDX39A-208ENST00000588692 TOP2AP11388 1531 aaKnown RBP26.88■■□□□ 1.89
DDX39A-208ENST00000588692 CADPSQ9ULU8 1353 aa26.84■■□□□ 1.89
DDX39A-208ENST00000588692 PDS5BQ9NTI5 1447 aa26.84■■□□□ 1.89
DDX39A-208ENST00000588692 KIF21AQ7Z4S6 1674 aa26.8■■□□□ 1.88
DDX39A-208ENST00000588692 THOC2Q8NI27 1593 aaKnown RBP26.79■■□□□ 1.88
DDX39A-208ENST00000588692 CFTRP13569 1480 aa26.65■■□□□ 1.86
DDX39A-208ENST00000588692 MRC2Q9UBG0 1479 aa26.59■■□□□ 1.85
DDX39A-208ENST00000588692 CEP164Q9UPV0 1460 aa26.56■■□□□ 1.84
DDX39A-208ENST00000588692 FANCD2Q9BXW9 1451 aa26.54■■□□□ 1.84
DDX39A-208ENST00000588692 WDR62O43379 1518 aa26.52■■□□□ 1.84
DDX39A-208ENST00000588692 CCDC88BA6NC98 1476 aa26.51■■□□□ 1.83
DDX39A-208ENST00000588692 PRDM2Q13029 1718 aa26.51■■□□□ 1.83
DDX39A-208ENST00000588692 DNAJC5Q9H3Z4 198 aa26.4■■□□□ 1.82
DDX39A-208ENST00000588692 URB2Q14146 1524 aaKnown RBP26.29■■□□□ 1.8
DDX39A-208ENST00000588692 ABCC8Q09428 1581 aa26.12■■□□□ 1.77
DDX39A-208ENST00000588692 TOPBP1Q92547 1522 aa26.1■■□□□ 1.77
DDX39A-208ENST00000588692 DNMBPQ6XZF7 1577 aa26.07■■□□□ 1.76
DDX39A-208ENST00000588692 SUPT5HO00267 1087 aaKnown RBP26.04■■□□□ 1.76
DDX39A-208ENST00000588692 IFT140Q96RY7 1462 aa26.02■■□□□ 1.76
DDX39A-208ENST00000588692 ZNF608Q9ULD9 1512 aaPredicted RBP25.88■■□□□ 1.73
DDX39A-208ENST00000588692 TARBP1Q13395 1621 aaKnown RBP25.85■■□□□ 1.73
DDX39A-208ENST00000588692 POLA1P09884 1462 aaPredicted RBP25.85■■□□□ 1.73
DDX39A-208ENST00000588692 EIF4G3O43432 1585 aaKnown RBP25.83■■□□□ 1.73
DDX39A-208ENST00000588692 CUX1P39880 1505 aa25.78■■□□□ 1.72
DDX39A-208ENST00000588692 FGD5Q6ZNL6 1462 aa25.75■■□□□ 1.71
DDX39A-208ENST00000588692 OSCARQ8IYS5 282 aa25.72■■□□□ 1.71
DDX39A-208ENST00000588692 SOGA1O94964 1423 aa25.71■■□□□ 1.71
DDX39A-208ENST00000588692 WDR97A6NE52 1622 aa25.7■■□□□ 1.7
DDX39A-208ENST00000588692 RAD54L2Q9Y4B4 1467 aa25.7■■□□□ 1.7
DDX39A-208ENST00000588692 AQRO60306 1485 aaKnown RBP eCLIP25.68■■□□□ 1.71e-7■■■■■ 30.6
DDX39A-208ENST00000588692 TDRD9Q8NDG6 1382 aaKnown RBP25.58■■□□□ 1.69
DDX39A-208ENST00000588692 CHD1O14646 1710 aa25.56■■□□□ 1.68
DDX39A-208ENST00000588692 BIVM-ERCC5R4GMW8 1640 aa25.54■■□□□ 1.68
DDX39A-208ENST00000588692 TOP2BQ02880 1626 aa25.52■■□□□ 1.68
DDX39A-208ENST00000588692 WRNQ14191 1432 aaPredicted RBP eCLIP25.51■■□□□ 1.672e-9■■■■■ 39.4
DDX39A-208ENST00000588692 ABCA10Q8WWZ4 1543 aa25.5■■□□□ 1.67
DDX39A-208ENST00000588692 GRIN2BQ13224 1484 aa25.49■■□□□ 1.67
DDX39A-208ENST00000588692 SNAPC4Q5SXM2 1469 aa25.47■■□□□ 1.67
DDX39A-208ENST00000588692 MAGI1Q96QZ7 1491 aaPredicted RBP25.47■■□□□ 1.67
DDX39A-208ENST00000588692 SYNJ1O43426 1573 aa25.47■■□□□ 1.67
DDX39A-208ENST00000588692 PBRM1Q86U86 1689 aa25.45■■□□□ 1.66
DDX39A-208ENST00000588692 ABCA5Q8WWZ7 1642 aa25.45■■□□□ 1.66
DDX39A-208ENST00000588692 GAPVD1Q14C86 1478 aa25.43■■□□□ 1.66
DDX39A-208ENST00000588692 FBLN2P98095 1184 aa25.4■■□□□ 1.66
DDX39A-208ENST00000588692 RIMBP3CA6NJZ7 1639 aa25.39■■□□□ 1.65
DDX39A-208ENST00000588692 RIMBP3BA6NNM3 1639 aa25.39■■□□□ 1.65
DDX39A-208ENST00000588692 RIMBP3Q9UFD9 1639 aa25.39■■□□□ 1.65
DDX39A-208ENST00000588692 SYNJ2O15056 1496 aa25.36■■□□□ 1.65
DDX39A-208ENST00000588692 TRIM41Q8WV44 630 aa25.35■■□□□ 1.65
DDX39A-208ENST00000588692 ARHGEF11O15085 1522 aa25.35■■□□□ 1.65
DDX39A-208ENST00000588692 CHMP7Q8WUX9 453 aaPredicted RBP25.32■■□□□ 1.64
DDX39A-208ENST00000588692 CLASP1Q7Z460 1538 aa25.27■■□□□ 1.64
DDX39A-208ENST00000588692 ADAMTS12P58397 1594 aa25.22■■□□□ 1.63
DDX39A-208ENST00000588692 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
DDX39A-208ENST00000588692 GRIN2AQ12879 1464 aa25.16■■□□□ 1.62
DDX39A-208ENST00000588692 FHAD1B1AJZ9 1412 aa25.14■■□□□ 1.61
DDX39A-208ENST00000588692 ARAP1Q96P48 1450 aa25.11■■□□□ 1.61
DDX39A-208ENST00000588692 NUP160Q12769 1436 aa25.06■■□□□ 1.6
DDX39A-208ENST00000588692 CYB5RLQ6IPT4 315 aa25.05■■□□□ 1.6
DDX39A-208ENST00000588692 CEP170Q5SW79 1584 aa25.04■■□□□ 1.6
DDX39A-208ENST00000588692 KIF27Q86VH2 1401 aa25■■□□□ 1.59
DDX39A-208ENST00000588692 CUL7Q14999 1698 aa24.95■■□□□ 1.58
DDX39A-208ENST00000588692 SHROOM2Q13796 1616 aa24.94■■□□□ 1.58
DDX39A-208ENST00000588692 IGF1RP08069 1367 aa24.9■■□□□ 1.58
DDX39A-208ENST00000588692 RUSC2Q8N2Y8 1516 aa24.86■■□□□ 1.57
DDX39A-208ENST00000588692 ERCC6L2Q5T890 1561 aa24.84■■□□□ 1.57
DDX39A-208ENST00000588692 CARMIL1Q5VZK9 1371 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms