Protein–RNA interactions for Protein: Q9NR30

DDX21, Nucleolar RNA helicase 2, humanhuman

Known RBP eCLIP

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX21Q9NR30 CAP1-212ENST00000424977 702 ntTSL 510.55□□□□□ -0.721e-6■□□□□ 9
DDX21Q9NR30 CAP1-201ENST00000340450 2592 ntAPPRIS ALT1 TSL 5 BASIC10.23□□□□□ -0.771e-6■□□□□ 9
DDX21Q9NR30 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.911e-6■□□□□ 9
DDX21Q9NR30 MIR451A-201ENST00000385059 72 ntBASIC-0.08□□□□□ -2.421e-6■□□□□ 9
DDX21Q9NR30 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.585e-6■□□□□ 8.9
DDX21Q9NR30 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.255e-6■□□□□ 8.9
DDX21Q9NR30 TRIB3-203ENST00000449710 1070 ntTSL 522.39■■□□□ 1.175e-6■□□□□ 8.9
DDX21Q9NR30 TRIB3-204ENST00000615226 877 ntTSL 37.22□□□□□ -1.255e-6■□□□□ 8.9
DDX21Q9NR30 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC16.72■□□□□ 0.272e-15■□□□□ 8.9
DDX21Q9NR30 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC16.13■□□□□ 0.172e-15■□□□□ 8.9
DDX21Q9NR30 RC3H2-202ENST00000357244 3991 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.162e-15■□□□□ 8.9
DDX21Q9NR30 RC3H2-210ENST00000498479 5746 ntTSL 213.51□□□□□ -0.252e-15■□□□□ 8.9
DDX21Q9NR30 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.652e-15■□□□□ 8.9
DDX21Q9NR30 SNORD90-201ENST00000391145 111 ntBASIC-0.27□□□□□ -2.452e-15■□□□□ 8.9
DDX21Q9NR30 SNHG26-201ENST00000415611 1099 ntTSL 5 BASIC13.63□□□□□ -0.232e-73■□□□□ 8.7
DDX21Q9NR30 SNHG26-202ENST00000422542 1106 ntTSL 3 BASIC11.9□□□□□ -0.52e-73■□□□□ 8.7
DDX21Q9NR30 SNHG26-203ENST00000432668 574 ntTSL 37.64□□□□□ -1.192e-73■□□□□ 8.7
DDX21Q9NR30 SNORD93-201ENST00000408813 74 ntBASIC0.97□□□□□ -2.252e-73■□□□□ 8.7
DDX21Q9NR30 NOP58-208ENST00000488403 871 ntTSL 218.97■□□□□ 0.635e-45■□□□□ 8.6
DDX21Q9NR30 NOP58-202ENST00000426814 655 ntTSL 218.88■□□□□ 0.615e-45■□□□□ 8.6
DDX21Q9NR30 CLTC-213ENST00000584313 715 ntTSL 318.67■□□□□ 0.582e-9■□□□□ 8.6
DDX21Q9NR30 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.45e-45■□□□□ 8.6
DDX21Q9NR30 NOP58-205ENST00000472050 582 ntTSL 315.25■□□□□ 0.035e-45■□□□□ 8.6
DDX21Q9NR30 GAPVD1-220ENST00000497580 3720 ntTSL 214.59□□□□□ -0.073e-6■□□□□ 8.6
DDX21Q9NR30 NOP58-204ENST00000467734 638 ntTSL 514.59□□□□□ -0.075e-45■□□□□ 8.6
DDX21Q9NR30 GAPVD1-219ENST00000495955 5309 ntTSL 1 (best) BASIC11.59□□□□□ -0.553e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-204ENST00000394083 4747 ntTSL 5 BASIC10.57□□□□□ -0.723e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC9.45□□□□□ -0.93e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC9.02□□□□□ -0.973e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-209ENST00000436712 2490 ntTSL 58.8□□□□□ -13e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-212ENST00000467750 3163 ntTSL 58.61□□□□□ -1.033e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC8.51□□□□□ -1.053e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-208ENST00000431329 2512 ntTSL 28.5□□□□□ -1.053e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.113e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.153e-6■□□□□ 8.6
DDX21Q9NR30 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.37□□□□□ -1.393e-6■□□□□ 8.6
DDX21Q9NR30 CLTC-214ENST00000585198 477 ntTSL 55.78□□□□□ -1.482e-9■□□□□ 8.6
DDX21Q9NR30 CLTC-204ENST00000472129 654 ntTSL 25.57□□□□□ -1.522e-9■□□□□ 8.6
DDX21Q9NR30 NOP58-209ENST00000492688 571 ntTSL 45.15□□□□□ -1.595e-45■□□□□ 8.6
DDX21Q9NR30 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.13■□□□□ 0.339e-6■□□□□ 8.5
DDX21Q9NR30 AC138409.2-202ENST00000507274 458 ntBASIC7.21□□□□□ -1.269e-6■□□□□ 8.5
DDX21Q9NR30 RPS3-213ENST00000529285 550 ntTSL 526.44■■□□□ 1.825e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-220ENST00000534555 387 ntTSL 321.17■□□□□ 0.985e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-206ENST00000526248 771 ntTSL 520.71■□□□□ 0.915e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.28■□□□□ 0.685e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-216ENST00000530721 796 ntTSL 316.72■□□□□ 0.275e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-218ENST00000532872 737 ntTSL 316.72■□□□□ 0.275e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-212ENST00000529173 1373 ntTSL 516.43■□□□□ 0.225e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.225e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.035e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-208ENST00000527273 390 ntTSL 315.11■□□□□ 0.015e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-211ENST00000528847 639 ntTSL 513.73□□□□□ -0.215e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-210ENST00000528439 473 ntTSL 312.76□□□□□ -0.375e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-219ENST00000534440 564 ntTSL 2 BASIC12.76□□□□□ -0.375e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-202ENST00000422465 903 ntTSL 212.73□□□□□ -0.375e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.395e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-207ENST00000526608 710 ntTSL 5 BASIC11.93□□□□□ -0.55e-35■□□□□ 8.5
DDX21Q9NR30 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC11.7□□□□□ -0.545e-35■□□□□ 8.5
DDX21Q9NR30 SNORD15A-201ENST00000384214 148 ntBASIC9.74□□□□□ -0.855e-35■□□□□ 8.5
DDX21Q9NR30 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.71e-26■□□□□ 8.5
DDX21Q9NR30 NCAPD2-207ENST00000539084 4290 ntTSL 213.22□□□□□ -0.291e-26■□□□□ 8.5
DDX21Q9NR30 NCAPD2-202ENST00000382457 2844 ntTSL 512.77□□□□□ -0.371e-26■□□□□ 8.5
DDX21Q9NR30 NCAPD2-208ENST00000539714 533 ntTSL 38.74□□□□□ -1.011e-26■□□□□ 8.5
DDX21Q9NR30 NCAPD2-210ENST00000541399 584 ntTSL 58.72□□□□□ -1.011e-26■□□□□ 8.5
DDX21Q9NR30 SCARNA10-201ENST00000459255 330 ntBASIC5.94□□□□□ -1.461e-26■□□□□ 8.5
DDX21Q9NR30 NEAT1-202ENST00000501122 22743 ntBASIC5.35□□□□□ -1.551e-323■□□□□ 8.5
DDX21Q9NR30 SNORD3C-201ENST00000580533 581 ntBASIC15.04■□□□□ -03e-26■□□□□ 8.4
DDX21Q9NR30 SNORD3C-203ENST00000625845 217 nt14.39□□□□□ -0.113e-26■□□□□ 8.4
DDX21Q9NR30 SNORD3C-202ENST00000620446 218 nt14.08□□□□□ -0.163e-26■□□□□ 8.4
DDX21Q9NR30 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC38.89■■■■□ 3.826e-8■□□□□ 8.3
DDX21Q9NR30 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC31.36■■■□□ 2.616e-8■□□□□ 8.3
DDX21Q9NR30 BBC3-205ENST00000598636 900 ntTSL 230.92■■■□□ 2.546e-8■□□□□ 8.3
DDX21Q9NR30 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.266e-8■□□□□ 8.3
DDX21Q9NR30 CYHR1-207ENST00000528558 907 ntTSL 228.89■■■□□ 2.226e-8■□□□□ 8.3
DDX21Q9NR30 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.2■■■□□ 2.16e-8■□□□□ 8.3
DDX21Q9NR30 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC23.59■■□□□ 1.376e-8■□□□□ 8.3
DDX21Q9NR30 CYHR1-206ENST00000526887 1012 ntTSL 322.58■■□□□ 1.216e-8■□□□□ 8.3
DDX21Q9NR30 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.116e-8■□□□□ 8.3
DDX21Q9NR30 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.076e-8■□□□□ 8.3
DDX21Q9NR30 TMED9-204ENST00000507723 1018 ntTSL 218.94■□□□□ 0.626e-8■□□□□ 8.3
DDX21Q9NR30 TMED9-206ENST00000513799 772 ntTSL 215.37■□□□□ 0.056e-8■□□□□ 8.3
DDX21Q9NR30 TMED9-205ENST00000510499 821 ntTSL 213.09□□□□□ -0.316e-8■□□□□ 8.3
DDX21Q9NR30 CLTC-207ENST00000483176 760 ntTSL 36.19□□□□□ -1.426e-8■□□□□ 8.3
DDX21Q9NR30 TMED9-203ENST00000507578 144 ntTSL 54.11□□□□□ -1.756e-8■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-202ENST00000578334 956 ntTSL 1 (best)36.84■■■■□ 3.491e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-209ENST00000583826 1004 ntTSL 1 (best)36.84■■■■□ 3.491e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-204ENST00000579859 1791 ntTSL 1 (best)33.01■■■□□ 2.881e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-211ENST00000585236 1791 ntTSL 1 (best)33.01■■■□□ 2.881e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-206ENST00000580515 980 ntTSL 1 (best)31.43■■■□□ 2.621e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.31■■■□□ 2.61e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC29.74■■■□□ 2.351e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-201ENST00000578025 2229 ntTSL 1 (best)29.65■■■□□ 2.341e-7■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-207ENST00000580633 842 ntTSL 527.81■■■□□ 2.041e-7■□□□□ 8.3
DDX21Q9NR30 IGF2BP3-207ENST00000468263 706 ntTSL 222.18■■□□□ 1.144e-6■□□□□ 8.3
DDX21Q9NR30 IGF2BP3-203ENST00000465058 534 ntTSL 420.66■□□□□ 0.94e-6■□□□□ 8.3
DDX21Q9NR30 IGF2BP3-211ENST00000479504 559 ntTSL 420.66■□□□□ 0.94e-6■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-210ENST00000583841 840 ntTSL 320.15■□□□□ 0.821e-7■□□□□ 8.3
DDX21Q9NR30 IGF2BP3-204ENST00000466809 588 ntTSL 519.38■□□□□ 0.694e-6■□□□□ 8.3
DDX21Q9NR30 GSE1-205ENST00000412692 6625 ntTSL 517■□□□□ 0.314e-6■□□□□ 8.3
DDX21Q9NR30 TSPOAP1-AS1-208ENST00000582348 558 ntTSL 516.72■□□□□ 0.271e-7■□□□□ 8.3
Retrieved 100 of 1,140 protein–RNA pairs in 12.5 ms