RNA–Protein interactions for RNA: ENST00000265956.8

GAPVD1-201, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 5 BASIC

Gene GAPVD1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-201ENST00000265956 NISCHQ9Y2I1 1504 aa15.37■□□□□ 0.05
GAPVD1-201ENST00000265956 SHROOM4Q9ULL8 1493 aa13.44□□□□□ -0.26
GAPVD1-201ENST00000265956 SUPT5HO00267 1087 aaKnown RBP13.19□□□□□ -0.3
GAPVD1-201ENST00000265956 DCAF8L2P0C7V8 631 aa13.16□□□□□ -0.3
GAPVD1-201ENST00000265956 ZCCHC6Q5VYS8 1495 aaKnown RBP12.97□□□□□ -0.33
GAPVD1-201ENST00000265956 CCDC180Q9P1Z9 1646 aa12.92□□□□□ -0.34
GAPVD1-201ENST00000265956 CHIC1Q5VXU3 224 aa12.67□□□□□ -0.38
GAPVD1-201ENST00000265956 MYO15BQ96JP2 1530 aa12.61□□□□□ -0.39
GAPVD1-201ENST00000265956 DCAF1Q9Y4B6 1507 aa12.46□□□□□ -0.41
GAPVD1-201ENST00000265956 LOC105371045A0A1W2PR82 267 aa12.44□□□□□ -0.42
GAPVD1-201ENST00000265956 PCGF6Q9BYE7 350 aa12.42□□□□□ -0.42
GAPVD1-201ENST00000265956 SCRIBQ14160 1630 aa12.35□□□□□ -0.43
GAPVD1-201ENST00000265956 HRCP23327 699 aa12.29□□□□□ -0.44
GAPVD1-201ENST00000265956 ABCC9O60706 1549 aa12.28□□□□□ -0.44
GAPVD1-201ENST00000265956 EHMT2Q96KQ7 1210 aa12.26□□□□□ -0.45
GAPVD1-201ENST00000265956 FAM9AQ8IZU1 332 aaPredicted RBP12.24□□□□□ -0.45
GAPVD1-201ENST00000265956 RSF1Q96T23 1441 aaPredicted RBP12.23□□□□□ -0.45
GAPVD1-201ENST00000265956 PPARGC1BQ86YN6 1023 aaKnown RBP12.2□□□□□ -0.46
GAPVD1-201ENST00000265956 TRIM41Q8WV44 630 aa12.2□□□□□ -0.46
GAPVD1-201ENST00000265956 RB1CC1Q8TDY2 1594 aa12.11□□□□□ -0.47
GAPVD1-201ENST00000265956 CECR2Q9BXF3 1484 aa12.1□□□□□ -0.47
GAPVD1-201ENST00000265956 TRIM26Q12899 539 aaPredicted RBP12.04□□□□□ -0.48
GAPVD1-201ENST00000265956 MROH2BQ7Z745 1585 aa12.02□□□□□ -0.49
GAPVD1-201ENST00000265956 NACADO15069 1562 aa12.02□□□□□ -0.49
GAPVD1-201ENST00000265956 WIZO95785 1651 aa11.96□□□□□ -0.5
GAPVD1-201ENST00000265956 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
GAPVD1-201ENST00000265956 TTBK1Q5TCY1 1321 aaPredicted RBP11.83□□□□□ -0.52
GAPVD1-201ENST00000265956 BAZ1AQ9NRL2 1556 aaPredicted RBP11.79□□□□□ -0.52
GAPVD1-201ENST00000265956 ABCC8Q09428 1581 aa11.75□□□□□ -0.53
GAPVD1-201ENST00000265956 CCDC88BA6NC98 1476 aa11.72□□□□□ -0.53
GAPVD1-201ENST00000265956 ZEB1P37275 1124 aaPredicted RBP11.72□□□□□ -0.53
GAPVD1-201ENST00000265956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.7□□□□□ -0.54
GAPVD1-201ENST00000265956 SMARCA4P51532 1647 aa11.69□□□□□ -0.54
GAPVD1-201ENST00000265956 UNC13AQ9UPW8 1703 aa11.68□□□□□ -0.54
GAPVD1-201ENST00000265956 TOP2AP11388 1531 aaKnown RBP11.68□□□□□ -0.54
GAPVD1-201ENST00000265956 UBTFP17480 764 aaKnown RBP11.67□□□□□ -0.54
GAPVD1-201ENST00000265956 SOGA1O94964 1423 aa11.66□□□□□ -0.54
GAPVD1-201ENST00000265956 EIF4G1Q04637 1599 aaKnown RBP11.64□□□□□ -0.55
GAPVD1-201ENST00000265956 SMARCA2P51531 1590 aa11.64□□□□□ -0.55
GAPVD1-201ENST00000265956 CCER1Q8TC90 406 aaPredicted RBP11.64□□□□□ -0.55
GAPVD1-201ENST00000265956 RUSC2Q8N2Y8 1516 aa11.61□□□□□ -0.55
GAPVD1-201ENST00000265956 RANGAP1P46060 587 aaPredicted RBP11.6□□□□□ -0.55
GAPVD1-201ENST00000265956 CSRNP3Q8WYN3 585 aa11.59□□□□□ -0.55
GAPVD1-201ENST00000265956 CEP162Q5TB80 1403 aa11.57□□□□□ -0.56
GAPVD1-201ENST00000265956 BICRAQ9NZM4 1560 aa11.54□□□□□ -0.56
GAPVD1-201ENST00000265956 WRNQ14191 1432 aaPredicted RBP eCLIP11.51□□□□□ -0.577e-6■■■■■ 39.7
GAPVD1-201ENST00000265956 TNIKQ9UKE5 1360 aa11.49□□□□□ -0.57
GAPVD1-201ENST00000265956 HNRNPUL2Q1KMD3 747 aaKnown RBP11.44□□□□□ -0.58
GAPVD1-201ENST00000265956 BAZ1BQ9UIG0 1483 aaKnown RBP11.44□□□□□ -0.58
GAPVD1-201ENST00000265956 ATAD2BQ9ULI0 1458 aa11.43□□□□□ -0.58
GAPVD1-201ENST00000265956 GOLGA3Q08378 1498 aa11.43□□□□□ -0.58
GAPVD1-201ENST00000265956 EEA1Q15075 1411 aa11.43□□□□□ -0.58
GAPVD1-201ENST00000265956 SYNJ1O43426 1573 aa11.42□□□□□ -0.58
GAPVD1-201ENST00000265956 SCAF1Q9H7N4 1312 aaKnown RBP11.38□□□□□ -0.59
GAPVD1-201ENST00000265956 APLP2Q06481 763 aa11.38□□□□□ -0.59
GAPVD1-201ENST00000265956 DIEXFQ68CQ4 756 aaKnown RBP11.38□□□□□ -0.59
GAPVD1-201ENST00000265956 PEG3Q9GZU2 1588 aa11.36□□□□□ -0.59
GAPVD1-201ENST00000265956 CLIP1P30622 1438 aa11.36□□□□□ -0.59
GAPVD1-201ENST00000265956 CEP164Q9UPV0 1460 aa11.35□□□□□ -0.59
GAPVD1-201ENST00000265956 RAPGEF2Q9Y4G8 1499 aa11.34□□□□□ -0.59
GAPVD1-201ENST00000265956 NEUROD1Q13562 356 aa11.28□□□□□ -0.6
GAPVD1-201ENST00000265956 KIF21BO75037 1637 aa11.26□□□□□ -0.61
GAPVD1-201ENST00000265956 VPS8Q8N3P4 1428 aa11.26□□□□□ -0.61
GAPVD1-201ENST00000265956 YTHDC1Q96MU7 727 aaKnown RBP11.25□□□□□ -0.61
GAPVD1-201ENST00000265956 ZNF316A6NFI3 1004 aaPredicted RBP11.24□□□□□ -0.61
GAPVD1-201ENST00000265956 ACIN1Q9UKV3 1341 aaKnown RBP11.23□□□□□ -0.61
GAPVD1-201ENST00000265956 TOP2BQ02880 1626 aa11.22□□□□□ -0.61
GAPVD1-201ENST00000265956 KANK4Q5T7N3 995 aaPredicted RBP11.21□□□□□ -0.61
GAPVD1-201ENST00000265956 ITGAEP38570 1179 aa11.2□□□□□ -0.62
GAPVD1-201ENST00000265956 GTF3C3Q9Y5Q9 886 aa11.18□□□□□ -0.62
GAPVD1-201ENST00000265956 CENPBP07199 599 aaPredicted RBP11.17□□□□□ -0.62
GAPVD1-201ENST00000265956 CUX1P39880 1505 aa11.17□□□□□ -0.62
GAPVD1-201ENST00000265956 NCAPD3P42695 1498 aa11.16□□□□□ -0.62
GAPVD1-201ENST00000265956 MIER1Q8N108 512 aa11.15□□□□□ -0.62
GAPVD1-201ENST00000265956 KIF27Q86VH2 1401 aa11.14□□□□□ -0.63
GAPVD1-201ENST00000265956 PRXQ9BXM0 1461 aa11.14□□□□□ -0.63
GAPVD1-201ENST00000265956 BIVM-ERCC5R4GMW8 1640 aa11.13□□□□□ -0.63
GAPVD1-201ENST00000265956 ARAP1Q96P48 1450 aa11.12□□□□□ -0.63
GAPVD1-201ENST00000265956 ATP1B4Q9UN42 357 aaPredicted RBP11.12□□□□□ -0.63
GAPVD1-201ENST00000265956 P3H3Q8IVL6 736 aa11.11□□□□□ -0.63
GAPVD1-201ENST00000265956 HMGXB3Q12766 1538 aa11.1□□□□□ -0.63
GAPVD1-201ENST00000265956 CFTRP13569 1480 aa11.1□□□□□ -0.63
GAPVD1-201ENST00000265956 CUX2O14529 1486 aa11.08□□□□□ -0.64
GAPVD1-201ENST00000265956 ERICH3Q5RHP9 1530 aa11.07□□□□□ -0.64
GAPVD1-201ENST00000265956 IGF1RP08069 1367 aa11.04□□□□□ -0.64
GAPVD1-201ENST00000265956 ARHGAP35Q9NRY4 1499 aa11.04□□□□□ -0.64
GAPVD1-201ENST00000265956 DHX57Q6P158 1386 aaKnown RBP11.04□□□□□ -0.64
GAPVD1-201ENST00000265956 CADPSQ9ULU8 1353 aa11.03□□□□□ -0.64
GAPVD1-201ENST00000265956 CARMIL1Q5VZK9 1371 aa11.01□□□□□ -0.65
GAPVD1-201ENST00000265956 FAM50AQ14320 339 aaKnown RBP11.01□□□□□ -0.65
GAPVD1-201ENST00000265956 CCNB3Q8WWL7 1395 aa11□□□□□ -0.65
GAPVD1-201ENST00000265956 FGD5Q6ZNL6 1462 aa11□□□□□ -0.65
GAPVD1-201ENST00000265956 PELP1Q8IZL8 1130 aaKnown RBP10.97□□□□□ -0.65
GAPVD1-201ENST00000265956 RRBP1Q9P2E9 1410 aaKnown RBP10.96□□□□□ -0.66
GAPVD1-201ENST00000265956 RAD54L2Q9Y4B4 1467 aa10.95□□□□□ -0.66
GAPVD1-201ENST00000265956 CC2D2AQ9P2K1 1620 aa10.94□□□□□ -0.66
GAPVD1-201ENST00000265956 NESP48681 1621 aa10.93□□□□□ -0.66
GAPVD1-201ENST00000265956 FANCD2Q9BXW9 1451 aa10.93□□□□□ -0.66
GAPVD1-201ENST00000265956 RAB3GAP2Q9H2M9 1393 aa10.93□□□□□ -0.66
GAPVD1-201ENST00000265956 CLSPNQ9HAW4 1339 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms