RNA–Protein interactions for RNA: ENST00000470056.5

GAPVD1-215, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 5 BASIC

Gene GAPVD1, Length 8,923 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-215ENST00000470056 NISCHQ9Y2I1 1504 aa14.8□□□□□ -0.04
GAPVD1-215ENST00000470056 CCDC180Q9P1Z9 1646 aa12.81□□□□□ -0.36
GAPVD1-215ENST00000470056 ZCCHC6Q5VYS8 1495 aaKnown RBP12.46□□□□□ -0.41
GAPVD1-215ENST00000470056 DCAF8L2P0C7V8 631 aa12.38□□□□□ -0.43
GAPVD1-215ENST00000470056 DCAF1Q9Y4B6 1507 aa12.28□□□□□ -0.44
GAPVD1-215ENST00000470056 SHROOM4Q9ULL8 1493 aa12.24□□□□□ -0.45
GAPVD1-215ENST00000470056 MYO15BQ96JP2 1530 aa12.09□□□□□ -0.47
GAPVD1-215ENST00000470056 ABCC9O60706 1549 aa12□□□□□ -0.49
GAPVD1-215ENST00000470056 NACADO15069 1562 aa11.97□□□□□ -0.49
GAPVD1-215ENST00000470056 SUPT5HO00267 1087 aaKnown RBP11.97□□□□□ -0.49
GAPVD1-215ENST00000470056 RB1CC1Q8TDY2 1594 aa11.85□□□□□ -0.51
GAPVD1-215ENST00000470056 SCRIBQ14160 1630 aa11.8□□□□□ -0.52
GAPVD1-215ENST00000470056 RSF1Q96T23 1441 aaPredicted RBP11.55□□□□□ -0.56
GAPVD1-215ENST00000470056 BAZ1AQ9NRL2 1556 aaPredicted RBP11.49□□□□□ -0.57
GAPVD1-215ENST00000470056 CHIC1Q5VXU3 224 aa11.47□□□□□ -0.57
GAPVD1-215ENST00000470056 CECR2Q9BXF3 1484 aa11.42□□□□□ -0.58
GAPVD1-215ENST00000470056 MROH2BQ7Z745 1585 aa11.38□□□□□ -0.59
GAPVD1-215ENST00000470056 PABPN1Q86U42 306 aaKnown RBP eCLIP11.37□□□□□ -0.59
GAPVD1-215ENST00000470056 SMARCA4P51532 1647 aa11.31□□□□□ -0.6
GAPVD1-215ENST00000470056 TRIM41Q8WV44 630 aa11.31□□□□□ -0.6
GAPVD1-215ENST00000470056 TOP2AP11388 1531 aaKnown RBP11.27□□□□□ -0.6
GAPVD1-215ENST00000470056 BICRAQ9NZM4 1560 aa11.26□□□□□ -0.61
GAPVD1-215ENST00000470056 UNC13AQ9UPW8 1703 aa11.25□□□□□ -0.61
GAPVD1-215ENST00000470056 WIZO95785 1651 aa11.24□□□□□ -0.61
GAPVD1-215ENST00000470056 SMARCA2P51531 1590 aa11.21□□□□□ -0.61
GAPVD1-215ENST00000470056 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
GAPVD1-215ENST00000470056 PEG3Q9GZU2 1588 aa11.15□□□□□ -0.62
GAPVD1-215ENST00000470056 ATAD2BQ9ULI0 1458 aa11.13□□□□□ -0.63
GAPVD1-215ENST00000470056 CCDC88BA6NC98 1476 aa11.12□□□□□ -0.63
GAPVD1-215ENST00000470056 MYT1Q01538 1121 aa11.08□□□□□ -0.64
GAPVD1-215ENST00000470056 PELP1Q8IZL8 1130 aaKnown RBP11.06□□□□□ -0.64
GAPVD1-215ENST00000470056 FAM9AQ8IZU1 332 aaPredicted RBP11.04□□□□□ -0.64
GAPVD1-215ENST00000470056 NCAPD3P42695 1498 aa11.04□□□□□ -0.64
GAPVD1-215ENST00000470056 HMGXB3Q12766 1538 aa11.03□□□□□ -0.64
GAPVD1-215ENST00000470056 EIF4G1Q04637 1599 aaKnown RBP11.03□□□□□ -0.64
GAPVD1-215ENST00000470056 EEA1Q15075 1411 aa11.01□□□□□ -0.65
GAPVD1-215ENST00000470056 LOC105371045A0A1W2PR82 267 aa10.98□□□□□ -0.65
GAPVD1-215ENST00000470056 WRNQ14191 1432 aaPredicted RBP eCLIP10.97□□□□□ -0.657e-6■■■■■ 39.7
GAPVD1-215ENST00000470056 ABCC8Q09428 1581 aa10.89□□□□□ -0.67
GAPVD1-215ENST00000470056 CSRNP3Q8WYN3 585 aa10.88□□□□□ -0.67
GAPVD1-215ENST00000470056 EHMT2Q96KQ7 1210 aa10.84□□□□□ -0.67
GAPVD1-215ENST00000470056 UBTFP17480 764 aaKnown RBP10.84□□□□□ -0.67
GAPVD1-215ENST00000470056 CFTRP13569 1480 aa10.82□□□□□ -0.68
GAPVD1-215ENST00000470056 TRIM26Q12899 539 aaPredicted RBP10.82□□□□□ -0.68
GAPVD1-215ENST00000470056 CADPSQ9ULU8 1353 aa10.81□□□□□ -0.68
GAPVD1-215ENST00000470056 GOLGA3Q08378 1498 aa10.81□□□□□ -0.68
GAPVD1-215ENST00000470056 PCGF6Q9BYE7 350 aa10.8□□□□□ -0.68
GAPVD1-215ENST00000470056 CC2D2AQ9P2K1 1620 aa10.79□□□□□ -0.68
GAPVD1-215ENST00000470056 CEP164Q9UPV0 1460 aa10.79□□□□□ -0.68
GAPVD1-215ENST00000470056 TNIKQ9UKE5 1360 aa10.79□□□□□ -0.68
GAPVD1-215ENST00000470056 SOGA1O94964 1423 aa10.77□□□□□ -0.68
GAPVD1-215ENST00000470056 TOP2BQ02880 1626 aa10.75□□□□□ -0.69
GAPVD1-215ENST00000470056 SYNJ1O43426 1573 aa10.74□□□□□ -0.69
GAPVD1-215ENST00000470056 KIF27Q86VH2 1401 aa10.74□□□□□ -0.69
GAPVD1-215ENST00000470056 APLP2Q06481 763 aa10.73□□□□□ -0.69
GAPVD1-215ENST00000470056 CEP162Q5TB80 1403 aa10.71□□□□□ -0.7
GAPVD1-215ENST00000470056 BIVM-ERCC5R4GMW8 1640 aa10.69□□□□□ -0.7
GAPVD1-215ENST00000470056 KIF21BO75037 1637 aa10.68□□□□□ -0.7
GAPVD1-215ENST00000470056 PDS5BQ9NTI5 1447 aa10.67□□□□□ -0.7
GAPVD1-215ENST00000470056 FANCD2Q9BXW9 1451 aa10.66□□□□□ -0.7
GAPVD1-215ENST00000470056 ZEB1P37275 1124 aaPredicted RBP10.66□□□□□ -0.7
GAPVD1-215ENST00000470056 CUX1P39880 1505 aa10.64□□□□□ -0.71
GAPVD1-215ENST00000470056 CLIP1P30622 1438 aa10.64□□□□□ -0.71
GAPVD1-215ENST00000470056 HRCP23327 699 aa10.63□□□□□ -0.71
GAPVD1-215ENST00000470056 RUSC2Q8N2Y8 1516 aa10.63□□□□□ -0.71
GAPVD1-215ENST00000470056 LAMC3Q9Y6N6 1575 aa10.62□□□□□ -0.71
GAPVD1-215ENST00000470056 ERICH3Q5RHP9 1530 aa10.62□□□□□ -0.71
GAPVD1-215ENST00000470056 PRDM2Q13029 1718 aa10.62□□□□□ -0.71
GAPVD1-215ENST00000470056 CUX2O14529 1486 aa10.61□□□□□ -0.71
GAPVD1-215ENST00000470056 FGD5Q6ZNL6 1462 aa10.58□□□□□ -0.72
GAPVD1-215ENST00000470056 DNMBPQ6XZF7 1577 aa10.58□□□□□ -0.72
GAPVD1-215ENST00000470056 CENPBP07199 599 aaPredicted RBP10.57□□□□□ -0.72
GAPVD1-215ENST00000470056 PRXQ9BXM0 1461 aa10.57□□□□□ -0.72
GAPVD1-215ENST00000470056 RAPGEF2Q9Y4G8 1499 aa10.56□□□□□ -0.72
GAPVD1-215ENST00000470056 VPS8Q8N3P4 1428 aa10.54□□□□□ -0.72
GAPVD1-215ENST00000470056 CARMIL1Q5VZK9 1371 aa10.53□□□□□ -0.72
GAPVD1-215ENST00000470056 RANGAP1P46060 587 aaPredicted RBP10.53□□□□□ -0.72
GAPVD1-215ENST00000470056 TOPBP1Q92547 1522 aa10.52□□□□□ -0.72
GAPVD1-215ENST00000470056 ABCA10Q8WWZ4 1543 aa10.5□□□□□ -0.73
GAPVD1-215ENST00000470056 NESP48681 1621 aa10.5□□□□□ -0.73
GAPVD1-215ENST00000470056 IGF1RP08069 1367 aa10.5□□□□□ -0.73
GAPVD1-215ENST00000470056 POLA1P09884 1462 aaPredicted RBP10.48□□□□□ -0.73
GAPVD1-215ENST00000470056 PPARGC1BQ86YN6 1023 aaKnown RBP10.48□□□□□ -0.73
GAPVD1-215ENST00000470056 CCER1Q8TC90 406 aaPredicted RBP10.46□□□□□ -0.74
GAPVD1-215ENST00000470056 TTBK1Q5TCY1 1321 aaPredicted RBP10.45□□□□□ -0.74
GAPVD1-215ENST00000470056 MRC2Q9UBG0 1479 aa10.45□□□□□ -0.74
GAPVD1-215ENST00000470056 FHAD1B1AJZ9 1412 aa10.43□□□□□ -0.74
GAPVD1-215ENST00000470056 RAD54L2Q9Y4B4 1467 aa10.43□□□□□ -0.74
GAPVD1-215ENST00000470056 ERCC6Q03468 1493 aa10.42□□□□□ -0.74
GAPVD1-215ENST00000470056 URB2Q14146 1524 aaKnown RBP10.42□□□□□ -0.74
GAPVD1-215ENST00000470056 CUL7Q14999 1698 aa10.42□□□□□ -0.74
GAPVD1-215ENST00000470056 GAPVD1Q14C86 1478 aa10.41□□□□□ -0.74
GAPVD1-215ENST00000470056 TDRD9Q8NDG6 1382 aaKnown RBP10.38□□□□□ -0.75
GAPVD1-215ENST00000470056 IFT140Q96RY7 1462 aa10.38□□□□□ -0.75
GAPVD1-215ENST00000470056 EFCAB5A4FU69 1503 aa10.37□□□□□ -0.75
GAPVD1-215ENST00000470056 ARAP1Q96P48 1450 aa10.36□□□□□ -0.75
GAPVD1-215ENST00000470056 FMN1Q68DA7 1419 aa10.35□□□□□ -0.75
GAPVD1-215ENST00000470056 ARHGAP35Q9NRY4 1499 aa10.34□□□□□ -0.75
GAPVD1-215ENST00000470056 ATP1B4Q9UN42 357 aaPredicted RBP10.34□□□□□ -0.75
GAPVD1-215ENST00000470056 GRIN2BQ13224 1484 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms