RNA–Protein interactions for RNA: ENST00000394083.6

GAPVD1-204, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 5 BASIC

Gene GAPVD1, Length 4,747 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-204ENST00000394083 NISCHQ9Y2I1 1504 aa19.63■□□□□ 0.73
GAPVD1-204ENST00000394083 CCDC180Q9P1Z9 1646 aa16.92■□□□□ 0.3
GAPVD1-204ENST00000394083 ZCCHC6Q5VYS8 1495 aaKnown RBP16.62■□□□□ 0.25
GAPVD1-204ENST00000394083 SHROOM4Q9ULL8 1493 aa16.18■□□□□ 0.18
GAPVD1-204ENST00000394083 DCAF1Q9Y4B6 1507 aa16.1■□□□□ 0.17
GAPVD1-204ENST00000394083 UNC13AQ9UPW8 1703 aa15.85■□□□□ 0.13
GAPVD1-204ENST00000394083 SCRIBQ14160 1630 aa15.74■□□□□ 0.11
GAPVD1-204ENST00000394083 MYO15BQ96JP2 1530 aa15.72■□□□□ 0.11
GAPVD1-204ENST00000394083 ABCC9O60706 1549 aa15.7■□□□□ 0.1
GAPVD1-204ENST00000394083 DCAF8L2P0C7V8 631 aa15.53■□□□□ 0.08
GAPVD1-204ENST00000394083 CECR2Q9BXF3 1484 aa15.48■□□□□ 0.07
GAPVD1-204ENST00000394083 NACADO15069 1562 aa15.48■□□□□ 0.07
GAPVD1-204ENST00000394083 BICRAQ9NZM4 1560 aa15.44■□□□□ 0.06
GAPVD1-204ENST00000394083 SUPT5HO00267 1087 aaKnown RBP15.43■□□□□ 0.06
GAPVD1-204ENST00000394083 RB1CC1Q8TDY2 1594 aa15.39■□□□□ 0.05
GAPVD1-204ENST00000394083 RSF1Q96T23 1441 aaPredicted RBP15.38■□□□□ 0.05
GAPVD1-204ENST00000394083 MROH2BQ7Z745 1585 aa15.38■□□□□ 0.05
GAPVD1-204ENST00000394083 WIZO95785 1651 aa15.37■□□□□ 0.05
GAPVD1-204ENST00000394083 EIF4G1Q04637 1599 aaKnown RBP15.31■□□□□ 0.04
GAPVD1-204ENST00000394083 CHIC1Q5VXU3 224 aa15.15■□□□□ 0.02
GAPVD1-204ENST00000394083 SMARCA4P51532 1647 aa15.09■□□□□ 0.01
GAPVD1-204ENST00000394083 BAZ1AQ9NRL2 1556 aaPredicted RBP15.08■□□□□ 0
GAPVD1-204ENST00000394083 SMARCA2P51531 1590 aa14.94□□□□□ -0.02
GAPVD1-204ENST00000394083 PEG3Q9GZU2 1588 aa14.93□□□□□ -0.02
GAPVD1-204ENST00000394083 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
GAPVD1-204ENST00000394083 PABPN1Q86U42 306 aaKnown RBP eCLIP14.83□□□□□ -0.03
GAPVD1-204ENST00000394083 CCDC88BA6NC98 1476 aa14.81□□□□□ -0.04
GAPVD1-204ENST00000394083 ABCC8Q09428 1581 aa14.8□□□□□ -0.04
GAPVD1-204ENST00000394083 LOC105371045A0A1W2PR82 267 aa14.74□□□□□ -0.05
GAPVD1-204ENST00000394083 ATAD2BQ9ULI0 1458 aa14.66□□□□□ -0.06
GAPVD1-204ENST00000394083 RUSC2Q8N2Y8 1516 aa14.62□□□□□ -0.07
GAPVD1-204ENST00000394083 SYNJ1O43426 1573 aa14.61□□□□□ -0.07
GAPVD1-204ENST00000394083 SOGA1O94964 1423 aa14.46□□□□□ -0.09
GAPVD1-204ENST00000394083 DNAJC5BQ9UF47 199 aa14.43□□□□□ -0.1
GAPVD1-204ENST00000394083 PRDM2Q13029 1718 aa14.42□□□□□ -0.1
GAPVD1-204ENST00000394083 HMGXB3Q12766 1538 aa14.41□□□□□ -0.1
GAPVD1-204ENST00000394083 NCAPD3P42695 1498 aa14.38□□□□□ -0.11
GAPVD1-204ENST00000394083 CC2D2AQ9P2K1 1620 aa14.38□□□□□ -0.11
GAPVD1-204ENST00000394083 BIVM-ERCC5R4GMW8 1640 aa14.37□□□□□ -0.11
GAPVD1-204ENST00000394083 BAZ1BQ9UIG0 1483 aaKnown RBP14.36□□□□□ -0.11
GAPVD1-204ENST00000394083 CUX1P39880 1505 aa14.31□□□□□ -0.12
GAPVD1-204ENST00000394083 TOP2BQ02880 1626 aa14.31□□□□□ -0.12
GAPVD1-204ENST00000394083 TRIM41Q8WV44 630 aa14.26□□□□□ -0.13
GAPVD1-204ENST00000394083 FAM9AQ8IZU1 332 aaPredicted RBP14.24□□□□□ -0.13
GAPVD1-204ENST00000394083 CFTRP13569 1480 aa14.22□□□□□ -0.13
GAPVD1-204ENST00000394083 WRNQ14191 1432 aaPredicted RBP eCLIP14.19□□□□□ -0.147e-6■■■■■ 39.7
GAPVD1-204ENST00000394083 NESP48681 1621 aa14.17□□□□□ -0.14
GAPVD1-204ENST00000394083 EHMT2Q96KQ7 1210 aa14.15□□□□□ -0.14
GAPVD1-204ENST00000394083 KIF21BO75037 1637 aa14.12□□□□□ -0.15
GAPVD1-204ENST00000394083 WDR97A6NE52 1622 aa14.11□□□□□ -0.15
GAPVD1-204ENST00000394083 RAPGEF2Q9Y4G8 1499 aa14.1□□□□□ -0.15
GAPVD1-204ENST00000394083 KIF21AQ7Z4S6 1674 aa14.08□□□□□ -0.16
GAPVD1-204ENST00000394083 PCGF6Q9BYE7 350 aa14.05□□□□□ -0.16
GAPVD1-204ENST00000394083 PRXQ9BXM0 1461 aa14.02□□□□□ -0.17
GAPVD1-204ENST00000394083 LRRIQ1Q96JM4 1722 aa14.01□□□□□ -0.17
GAPVD1-204ENST00000394083 CEP162Q5TB80 1403 aa14□□□□□ -0.17
GAPVD1-204ENST00000394083 PPARGC1BQ86YN6 1023 aaKnown RBP14□□□□□ -0.17
GAPVD1-204ENST00000394083 URB2Q14146 1524 aaKnown RBP13.95□□□□□ -0.18
GAPVD1-204ENST00000394083 CADPSQ9ULU8 1353 aa13.91□□□□□ -0.18
GAPVD1-204ENST00000394083 ARAP1Q96P48 1450 aa13.91□□□□□ -0.18
GAPVD1-204ENST00000394083 TNIKQ9UKE5 1360 aa13.91□□□□□ -0.18
GAPVD1-204ENST00000394083 FGD5Q6ZNL6 1462 aa13.9□□□□□ -0.18
GAPVD1-204ENST00000394083 HRCP23327 699 aa13.9□□□□□ -0.18
GAPVD1-204ENST00000394083 TARBP1Q13395 1621 aaKnown RBP13.89□□□□□ -0.19
GAPVD1-204ENST00000394083 RAD54L2Q9Y4B4 1467 aa13.88□□□□□ -0.19
GAPVD1-204ENST00000394083 CSRNP3Q8WYN3 585 aa13.87□□□□□ -0.19
GAPVD1-204ENST00000394083 ABCA5Q8WWZ7 1642 aa13.86□□□□□ -0.19
GAPVD1-204ENST00000394083 ERICH3Q5RHP9 1530 aa13.85□□□□□ -0.19
GAPVD1-204ENST00000394083 TOPBP1Q92547 1522 aa13.85□□□□□ -0.19
GAPVD1-204ENST00000394083 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
GAPVD1-204ENST00000394083 GOLGA3Q08378 1498 aa13.85□□□□□ -0.19
GAPVD1-204ENST00000394083 FANCD2Q9BXW9 1451 aa13.85□□□□□ -0.19
GAPVD1-204ENST00000394083 DNMBPQ6XZF7 1577 aa13.83□□□□□ -0.2
GAPVD1-204ENST00000394083 EEA1Q15075 1411 aa13.82□□□□□ -0.2
GAPVD1-204ENST00000394083 CEP164Q9UPV0 1460 aa13.81□□□□□ -0.2
GAPVD1-204ENST00000394083 IGF1RP08069 1367 aa13.8□□□□□ -0.2
GAPVD1-204ENST00000394083 CLIP1P30622 1438 aa13.8□□□□□ -0.2
GAPVD1-204ENST00000394083 LAMC3Q9Y6N6 1575 aa13.8□□□□□ -0.2
GAPVD1-204ENST00000394083 ARHGAP35Q9NRY4 1499 aa13.79□□□□□ -0.2
GAPVD1-204ENST00000394083 CUX2O14529 1486 aa13.75□□□□□ -0.21
GAPVD1-204ENST00000394083 ABCA10Q8WWZ4 1543 aa13.75□□□□□ -0.21
GAPVD1-204ENST00000394083 TRIM26Q12899 539 aaPredicted RBP13.75□□□□□ -0.21
GAPVD1-204ENST00000394083 CTTNBP2Q8WZ74 1663 aa13.72□□□□□ -0.21
GAPVD1-204ENST00000394083 PBRM1Q86U86 1689 aa13.72□□□□□ -0.21
GAPVD1-204ENST00000394083 THOC2Q8NI27 1593 aaKnown RBP13.69□□□□□ -0.22
GAPVD1-204ENST00000394083 VPS8Q8N3P4 1428 aa13.67□□□□□ -0.22
GAPVD1-204ENST00000394083 KANK4Q5T7N3 995 aaPredicted RBP13.64□□□□□ -0.23
GAPVD1-204ENST00000394083 SAMD9Q5K651 1589 aa13.63□□□□□ -0.23
GAPVD1-204ENST00000394083 PCF11O94913 1555 aaKnown RBP13.63□□□□□ -0.23
GAPVD1-204ENST00000394083 ZNF608Q9ULD9 1512 aaPredicted RBP13.62□□□□□ -0.23
GAPVD1-204ENST00000394083 CFAP43Q8NDM7 1665 aa13.61□□□□□ -0.23
GAPVD1-204ENST00000394083 KIF27Q86VH2 1401 aa13.61□□□□□ -0.23
GAPVD1-204ENST00000394083 MAGI3Q5TCQ9 1506 aa13.59□□□□□ -0.23
GAPVD1-204ENST00000394083 CUL7Q14999 1698 aa13.58□□□□□ -0.24
GAPVD1-204ENST00000394083 SNAPC4Q5SXM2 1469 aa13.57□□□□□ -0.24
GAPVD1-204ENST00000394083 WDR62O43379 1518 aa13.57□□□□□ -0.24
GAPVD1-204ENST00000394083 TTBK1Q5TCY1 1321 aaPredicted RBP13.56□□□□□ -0.24
GAPVD1-204ENST00000394083 TDRD9Q8NDG6 1382 aaKnown RBP13.53□□□□□ -0.24
GAPVD1-204ENST00000394083 ADAMTS12P58397 1594 aa13.53□□□□□ -0.24
GAPVD1-204ENST00000394083 TIAM1Q13009 1591 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms