RNA–Protein interactions for RNA: ENST00000534440.5

RPS3-219, Transcript of ribosomal protein S3, humanhuman

TSL 2 BASIC

Gene RPS3, Length 564 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3-219ENST00000534440 NISCHQ9Y2I1 1504 aa23.4■■□□□ 1.34
RPS3-219ENST00000534440 ABCC9O60706 1549 aa20.54■□□□□ 0.88
RPS3-219ENST00000534440 CCDC180Q9P1Z9 1646 aa20.53■□□□□ 0.88
RPS3-219ENST00000534440 AEBP2Q6ZN18 517 aaPredicted RBP20.15■□□□□ 0.82
RPS3-219ENST00000534440 CHIC1Q5VXU3 224 aa19.99■□□□□ 0.79
RPS3-219ENST00000534440 ZCCHC6Q5VYS8 1495 aaKnown RBP19.67■□□□□ 0.74
RPS3-219ENST00000534440 DNAJC5BQ9UF47 199 aa19.57■□□□□ 0.72
RPS3-219ENST00000534440 RB1CC1Q8TDY2 1594 aa19.42■□□□□ 0.7
RPS3-219ENST00000534440 DCAF1Q9Y4B6 1507 aa19.35■□□□□ 0.69
RPS3-219ENST00000534440 NACADO15069 1562 aa19.29■□□□□ 0.68
RPS3-219ENST00000534440 DCAF8L2P0C7V8 631 aa19.21■□□□□ 0.67
RPS3-219ENST00000534440 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
RPS3-219ENST00000534440 PABPN1Q86U42 306 aaKnown RBP eCLIP19.16■□□□□ 0.66
RPS3-219ENST00000534440 BICRAQ9NZM4 1560 aa18.93■□□□□ 0.62
RPS3-219ENST00000534440 SHROOM4Q9ULL8 1493 aa18.92■□□□□ 0.62
RPS3-219ENST00000534440 SCRIBQ14160 1630 aa18.85■□□□□ 0.61
RPS3-219ENST00000534440 UNC13AQ9UPW8 1703 aa18.83■□□□□ 0.61
RPS3-219ENST00000534440 CECR2Q9BXF3 1484 aa18.54■□□□□ 0.56
RPS3-219ENST00000534440 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
RPS3-219ENST00000534440 EIF4G1Q04637 1599 aaKnown RBP18.46■□□□□ 0.55
RPS3-219ENST00000534440 MROH2BQ7Z745 1585 aa18.1■□□□□ 0.49
RPS3-219ENST00000534440 RSF1Q96T23 1441 aaPredicted RBP18.07■□□□□ 0.48
RPS3-219ENST00000534440 BAZ1AQ9NRL2 1556 aaPredicted RBP18.07■□□□□ 0.48
RPS3-219ENST00000534440 SMARCA4P51532 1647 aa18.06■□□□□ 0.48
RPS3-219ENST00000534440 DNAJC5Q9H3Z4 198 aa18.05■□□□□ 0.48
RPS3-219ENST00000534440 SUPT5HO00267 1087 aaKnown RBP18.03■□□□□ 0.48
RPS3-219ENST00000534440 WIZO95785 1651 aa17.94■□□□□ 0.46
RPS3-219ENST00000534440 NCAPD3P42695 1498 aa17.9■□□□□ 0.46
RPS3-219ENST00000534440 PEG3Q9GZU2 1588 aa17.84■□□□□ 0.45
RPS3-219ENST00000534440 ATAD2BQ9ULI0 1458 aa17.81■□□□□ 0.44
RPS3-219ENST00000534440 CUX2O14529 1486 aa17.78■□□□□ 0.44
RPS3-219ENST00000534440 TOP2AP11388 1531 aaKnown RBP17.75■□□□□ 0.43
RPS3-219ENST00000534440 SMARCA2P51531 1590 aa17.74■□□□□ 0.43
RPS3-219ENST00000534440 ERCC6Q03468 1493 aa17.7■□□□□ 0.42
RPS3-219ENST00000534440 HMGXB3Q12766 1538 aa17.67■□□□□ 0.42
RPS3-219ENST00000534440 BAZ1BQ9UIG0 1483 aaKnown RBP17.65■□□□□ 0.42
RPS3-219ENST00000534440 NESP48681 1621 aa17.61■□□□□ 0.41
RPS3-219ENST00000534440 PHF23Q9BUL5 403 aaPredicted RBP17.56■□□□□ 0.4
RPS3-219ENST00000534440 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
RPS3-219ENST00000534440 THOC2Q8NI27 1593 aaKnown RBP17.4■□□□□ 0.38
RPS3-219ENST00000534440 LAMC3Q9Y6N6 1575 aa17.4■□□□□ 0.38
RPS3-219ENST00000534440 PDS5BQ9NTI5 1447 aa17.38■□□□□ 0.37
RPS3-219ENST00000534440 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
RPS3-219ENST00000534440 MRC2Q9UBG0 1479 aa17.22■□□□□ 0.35
RPS3-219ENST00000534440 KIF21AQ7Z4S6 1674 aa17.22■□□□□ 0.35
RPS3-219ENST00000534440 CFTRP13569 1480 aa17.2■□□□□ 0.34
RPS3-219ENST00000534440 WDR62O43379 1518 aa17.18■□□□□ 0.34
RPS3-219ENST00000534440 SENP3Q9H4L4 574 aaPredicted RBP17.16■□□□□ 0.34
RPS3-219ENST00000534440 PRDM2Q13029 1718 aa17.16■□□□□ 0.34
RPS3-219ENST00000534440 ABCC8Q09428 1581 aa17.14■□□□□ 0.33
RPS3-219ENST00000534440 FANCD2Q9BXW9 1451 aa17.09■□□□□ 0.33
RPS3-219ENST00000534440 CEP164Q9UPV0 1460 aa17.09■□□□□ 0.33
RPS3-219ENST00000534440 TRIM41Q8WV44 630 aa17.08■□□□□ 0.32
RPS3-219ENST00000534440 SYNJ1O43426 1573 aa17.02■□□□□ 0.31
RPS3-219ENST00000534440 WRNQ14191 1432 aaPredicted RBP eCLIP17■□□□□ 0.318e-7■□□□□ 9.9
RPS3-219ENST00000534440 OSCARQ8IYS5 282 aa16.99■□□□□ 0.31
RPS3-219ENST00000534440 URB2Q14146 1524 aaKnown RBP16.97■□□□□ 0.31
RPS3-219ENST00000534440 CUX1P39880 1505 aa16.94■□□□□ 0.3
RPS3-219ENST00000534440 BIVM-ERCC5R4GMW8 1640 aa16.93■□□□□ 0.3
RPS3-219ENST00000534440 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
RPS3-219ENST00000534440 DNMBPQ6XZF7 1577 aa16.82■□□□□ 0.28
RPS3-219ENST00000534440 ZNF608Q9ULD9 1512 aaPredicted RBP16.81■□□□□ 0.28
RPS3-219ENST00000534440 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
RPS3-219ENST00000534440 IFT140Q96RY7 1462 aa16.8■□□□□ 0.28
RPS3-219ENST00000534440 FGD5Q6ZNL6 1462 aa16.76■□□□□ 0.27
RPS3-219ENST00000534440 SOGA1O94964 1423 aa16.74■□□□□ 0.27
RPS3-219ENST00000534440 RUSC2Q8N2Y8 1516 aa16.71■□□□□ 0.27
RPS3-219ENST00000534440 POLA1P09884 1462 aaPredicted RBP16.71■□□□□ 0.27
RPS3-219ENST00000534440 FAM9AQ8IZU1 332 aaPredicted RBP16.67■□□□□ 0.26
RPS3-219ENST00000534440 RIMBP3CA6NJZ7 1639 aa16.67■□□□□ 0.26
RPS3-219ENST00000534440 RIMBP3BA6NNM3 1639 aa16.67■□□□□ 0.26
RPS3-219ENST00000534440 RIMBP3Q9UFD9 1639 aa16.67■□□□□ 0.26
RPS3-219ENST00000534440 ARHGEF11O15085 1522 aa16.66■□□□□ 0.26
RPS3-219ENST00000534440 RAD54L2Q9Y4B4 1467 aa16.65■□□□□ 0.26
RPS3-219ENST00000534440 WDR97A6NE52 1622 aa16.64■□□□□ 0.25
RPS3-219ENST00000534440 AQRO60306 1485 aaKnown RBP eCLIP16.64■□□□□ 0.251e-7■■■■■ 28
RPS3-219ENST00000534440 EEA1Q15075 1411 aa16.62■□□□□ 0.25
RPS3-219ENST00000534440 ABCA10Q8WWZ4 1543 aa16.6■□□□□ 0.25
RPS3-219ENST00000534440 EIF4G3O43432 1585 aaKnown RBP16.6■□□□□ 0.25
RPS3-219ENST00000534440 TARBP1Q13395 1621 aaKnown RBP16.59■□□□□ 0.25
RPS3-219ENST00000534440 CYB5RLQ6IPT4 315 aa16.59■□□□□ 0.25
RPS3-219ENST00000534440 KIF27Q86VH2 1401 aa16.55■□□□□ 0.24
RPS3-219ENST00000534440 ABCA5Q8WWZ7 1642 aa16.53■□□□□ 0.24
RPS3-219ENST00000534440 LOC105371045A0A1W2PR82 267 aa16.52■□□□□ 0.24
RPS3-219ENST00000534440 ARAP1Q96P48 1450 aa16.52■□□□□ 0.23
RPS3-219ENST00000534440 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
RPS3-219ENST00000534440 FBLN2P98095 1184 aa16.51■□□□□ 0.23
RPS3-219ENST00000534440 CSRNP3Q8WYN3 585 aa16.51■□□□□ 0.23
RPS3-219ENST00000534440 KIF21BO75037 1637 aa16.49■□□□□ 0.23
RPS3-219ENST00000534440 PRXQ9BXM0 1461 aa16.45■□□□□ 0.22
RPS3-219ENST00000534440 EHMT2Q96KQ7 1210 aa16.44■□□□□ 0.22
RPS3-219ENST00000534440 GAPVD1Q14C86 1478 aa16.43■□□□□ 0.22
RPS3-219ENST00000534440 IGF1RP08069 1367 aa16.43■□□□□ 0.22
RPS3-219ENST00000534440 GOLGA3Q08378 1498 aa16.42■□□□□ 0.22
RPS3-219ENST00000534440 SNAPC4Q5SXM2 1469 aa16.42■□□□□ 0.22
RPS3-219ENST00000534440 RAPGEF2Q9Y4G8 1499 aa16.42■□□□□ 0.22
RPS3-219ENST00000534440 PBRM1Q86U86 1689 aa16.42■□□□□ 0.22
RPS3-219ENST00000534440 CHD1O14646 1710 aa16.41■□□□□ 0.22
RPS3-219ENST00000534440 ERICH3Q5RHP9 1530 aa16.4■□□□□ 0.22
RPS3-219ENST00000534440 PLPPR3Q6T4P5 718 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms