RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	PKH3	Q03306	898 aa	Predicted RBP	12.13	□□□□□ -0.47
SHB17	YKR043C	RAD50	P12753	1312 aa		12.12	□□□□□ -0.47
SHB17	YKR043C	YBL028C	P38202	106 aa		12.12	□□□□□ -0.47
SHB17	YKR043C	KEL3	Q08979	651 aa	Predicted RBP	12.12	□□□□□ -0.47
SHB17	YKR043C	TAH18	Q12181	623 aa		12.12	□□□□□ -0.47
SHB17	YKR043C	PPM2	Q08282	695 aa		12.11	□□□□□ -0.47
SHB17	YKR043C	GIN4	Q12263	1142 aa		12.11	□□□□□ -0.47
SHB17	YKR043C	TUB2	P02557	457 aa	Known RBP	12.1	□□□□□ -0.47
SHB17	YKR043C	KIN1	P13185	1064 aa		12.1	□□□□□ -0.47
SHB17	YKR043C	OPI1	P21957	404 aa		12.1	□□□□□ -0.47
SHB17	YKR043C	STM1	P39015	273 aa	Known RBP	12.1	□□□□□ -0.47
SHB17	YKR043C	CST9	Q06032	482 aa		12.1	□□□□□ -0.47
SHB17	YKR043C	YDL124W	Q07551	312 aa	Known RBP	12.1	□□□□□ -0.47
SHB17	YKR043C	YPL260W	Q08977	551 aa		12.1	□□□□□ -0.47
SHB17	YKR043C	RIM20	Q12033	661 aa		12.1	□□□□□ -0.47
SHB17	YKR043C	TIF6	Q12522	245 aa	Known RBP	12.1	□□□□□ -0.47
SHB17	YKR043C	PEX29	Q03370	554 aa		12.09	□□□□□ -0.47
SHB17	YKR043C	VAS1	P07806	1104 aa	Known RBP	12.08	□□□□□ -0.48
SHB17	YKR043C	COQ1	P18900	473 aa		12.08	□□□□□ -0.48
SHB17	YKR043C	YHL050C	P38721	697 aa		12.08	□□□□□ -0.48
SHB17	YKR043C	SNU71	P53207	620 aa	Known RBP	12.08	□□□□□ -0.48
SHB17	YKR043C	MPH3	P0CE00	602 aa		12.07	□□□□□ -0.48
SHB17	YKR043C	AAP1	P37898	856 aa	Known RBP	12.06	□□□□□ -0.48
SHB17	YKR043C	RTS1	P38903	757 aa		12.06	□□□□□ -0.48
SHB17	YKR043C	ACA1	P39970	489 aa		12.06	□□□□□ -0.48
SHB17	YKR043C	RBA50	Q04418	439 aa		12.06	□□□□□ -0.48
SHB17	YKR043C	PRE8	P23639	250 aa		12.05	□□□□□ -0.48
SHB17	YKR043C	MOT2	P34909	587 aa	Known RBP	12.05	□□□□□ -0.48
SHB17	YKR043C	SPT21	P35209	758 aa		12.05	□□□□□ -0.48
SHB17	YKR043C	MET1	P36150	593 aa		12.05	□□□□□ -0.48
SHB17	YKR043C	APE3	P37302	537 aa	Known RBP	12.05	□□□□□ -0.48
SHB17	YKR043C	CST26	P38226	397 aa		12.05	□□□□□ -0.48
SHB17	YKR043C	SRF1	Q12516	437 aa		12.05	□□□□□ -0.48
SHB17	YKR043C	CHO2	P05374	869 aa	Known RBP	12.04	□□□□□ -0.48
SHB17	YKR043C	RRP8	P38961	392 aa	Known RBP	12.04	□□□□□ -0.48
SHB17	YKR043C	SLN1	P39928	1220 aa	Predicted RBP	12.04	□□□□□ -0.48
SHB17	YKR043C	SRM1	P21827	482 aa		12.03	□□□□□ -0.48
SHB17	YKR043C	RSC30	P38781	883 aa		12.03	□□□□□ -0.48
SHB17	YKR043C	VID27	P40157	782 aa		12.03	□□□□□ -0.48
SHB17	YKR043C	MRD1	Q06106	887 aa	Known RBP	12.03	□□□□□ -0.48
SHB17	YKR043C	RAD61	Q99359	647 aa		12.03	□□□□□ -0.48
SHB17	YKR043C	OCT1	P35999	772 aa		12.02	□□□□□ -0.49
SHB17	YKR043C	BRN1	P38170	754 aa		12.02	□□□□□ -0.49
SHB17	YKR043C	FPR4	Q06205	392 aa	Predicted RBP	12.02	□□□□□ -0.49
SHB17	YKR043C	TIF4631	P39935	952 aa	Known RBP	12.01	□□□□□ -0.49
SHB17	YKR043C	RPS15	Q01855	142 aa	Known RBP	12.01	□□□□□ -0.49
SHB17	YKR043C	JIP4	Q03361	876 aa		12.01	□□□□□ -0.49
SHB17	YKR043C	SKG3	Q06315	1026 aa		12.01	□□□□□ -0.49
SHB17	YKR043C	LAP2	Q10740	671 aa		12.01	□□□□□ -0.49
SHB17	YKR043C	SSF2	Q12153	453 aa	Predicted RBP	12.01	□□□□□ -0.49
SHB17	YKR043C	UFD2	P54860	961 aa		12	□□□□□ -0.49
SHB17	YKR043C	GCR2	Q01722	534 aa		12	□□□□□ -0.49
SHB17	YKR043C	YDJ1	P25491	409 aa	Known RBP	11.99	□□□□□ -0.49
SHB17	YKR043C	ASH1	P34233	588 aa		11.99	□□□□□ -0.49
SHB17	YKR043C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	11.99	□□□□□ -0.49	not detected
SHB17	YKR043C	NET1	P47035	1189 aa		11.99	□□□□□ -0.49
SHB17	YKR043C	KRS1	P15180	591 aa	Known RBP	11.98	□□□□□ -0.49
SHB17	YKR043C	FBP1	P09201	348 aa		11.97	□□□□□ -0.49
SHB17	YKR043C	CHS3	P29465	1165 aa		11.97	□□□□□ -0.49
SHB17	YKR043C	PRO3	P32263	286 aa	Known RBP	11.97	□□□□□ -0.49
SHB17	YKR043C	MYO3	P36006	1272 aa		11.97	□□□□□ -0.49
SHB17	YKR043C	LYS14	P40971	790 aa		11.97	□□□□□ -0.49
SHB17	YKR043C	HXT17	P53631	564 aa		11.97	□□□□□ -0.49
SHB17	YKR043C	SUB2	Q07478	446 aa	Known RBP	11.97	□□□□□ -0.49
SHB17	YKR043C	ERG12	P07277	443 aa		11.96	□□□□□ -0.49
SHB17	YKR043C	VPS8	P39702	1274 aa		11.96	□□□□□ -0.49
SHB17	YKR043C	SPR3	P41901	512 aa		11.96	□□□□□ -0.49
SHB17	YKR043C	TUS1	Q06412	1307 aa		11.95	□□□□□ -0.5
SHB17	YKR043C	ANP1	P32629	500 aa		11.95	□□□□□ -0.5
SHB17	YKR043C	IXR1	P33417	597 aa		11.95	□□□□□ -0.5
SHB17	YKR043C	CRG1	P38892	291 aa	RIP-Chip data	11.95	□□□□□ -0.5	not detected
SHB17	YKR043C	HXT13	P39924	564 aa		11.95	□□□□□ -0.5
SHB17	YKR043C	NCS6	P53088	359 aa		11.95	□□□□□ -0.5
SHB17	YKR043C	SPN1	Q06505	410 aa	Predicted RBP	11.95	□□□□□ -0.5
SHB17	YKR043C	RIT1	P23796	513 aa		11.94	□□□□□ -0.5
SHB17	YKR043C	SPB4	P25808	606 aa	Predicted RBP	11.94	□□□□□ -0.5
SHB17	YKR043C	DLD1	P32891	587 aa		11.94	□□□□□ -0.5
SHB17	YKR043C	MCD4	P36051	919 aa		11.94	□□□□□ -0.5
SHB17	YKR043C	ERG7	P38604	731 aa		11.94	□□□□□ -0.5
SHB17	YKR043C	CIC1	P38779	376 aa	Known RBP	11.94	□□□□□ -0.5
SHB17	YKR043C	VAB2	P40003	282 aa		11.94	□□□□□ -0.5
SHB17	YKR043C	YJL007C	P47080	104 aa		11.94	□□□□□ -0.5
SHB17	YKR043C	TPM1	P17536	199 aa	Known RBP	11.93	□□□□□ -0.5
SHB17	YKR043C	RER2	P35196	286 aa		11.93	□□□□□ -0.5
SHB17	YKR043C	HDA1	P53973	706 aa		11.93	□□□□□ -0.5
SHB17	YKR043C	YML037C	Q03703	340 aa		11.93	□□□□□ -0.5
SHB17	YKR043C	YLR225C	Q05948	407 aa	Known RBP	11.93	□□□□□ -0.5
SHB17	YKR043C	SGD1	Q06132	899 aa		11.93	□□□□□ -0.5
SHB17	YKR043C	CFT2	Q12102	859 aa	Predicted RBP	11.93	□□□□□ -0.5
SHB17	YKR043C	PGA3	Q12746	312 aa	Known RBP	11.93	□□□□□ -0.5
SHB17	YKR043C	SAM2	P19358	384 aa	Known RBP	11.92	□□□□□ -0.5
SHB17	YKR043C	ACE2	P21192	770 aa		11.92	□□□□□ -0.5
SHB17	YKR043C	PTK2	P47116	818 aa	Known RBP	11.92	□□□□□ -0.5
SHB17	YKR043C	UBX5	Q06682	500 aa		11.92	□□□□□ -0.5
SHB17	YKR043C	PER1	P25625	357 aa		11.91	□□□□□ -0.5
SHB17	YKR043C	IMP2'	P32351	346 aa		11.91	□□□□□ -0.5
SHB17	YKR043C	CDC60	P26637	1090 aa	Known RBP	11.9	□□□□□ -0.5
SHB17	YKR043C	PEP3	P27801	918 aa		11.9	□□□□□ -0.5
SHB17	YKR043C	PES4	P39684	611 aa		11.89	□□□□□ -0.51
SHB17	YKR043C	UBP9	P39967	754 aa		11.89	□□□□□ -0.51

Retrieved 100 of 5,963 RNA–protein pairs in 24.9 ms