Protein–RNA interactions for Protein: P40003

VAB2, Biogenesis of lysosome-related organelles complex 1 subunit VAB2, yeastyeast

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VAB2P40003 YML009W-BYML009W-B 477 nt23.57■■□□□ 1.36
VAB2P40003 NOP1YDL014W 984 nt23.16■■□□□ 1.3
VAB2P40003 NSR1YGR159C 1245 nt23.02■■□□□ 1.28
VAB2P40003 YKL036CYKL036C 393 nt21.78■■□□□ 1.08
VAB2P40003 YJL027CYJL027C 417 nt20.42■□□□□ 0.86
VAB2P40003 Q0297Q0297 156 nt20.37■□□□□ 0.85
VAB2P40003 SRX1YKL086W 384 nt20.19■□□□□ 0.82
VAB2P40003 SCS3YGL126W 1143 nt20.01■□□□□ 0.79
VAB2P40003 MDJ1YFL016C 1536 nt19.92■□□□□ 0.78
VAB2P40003 YCR051WYCR051W 669 nt19.22■□□□□ 0.67
VAB2P40003 YOL085CYOL085C 342 nt18.81■□□□□ 0.6
VAB2P40003 PKP1YIL042C 1185 nt18.46■□□□□ 0.55
VAB2P40003 SCJ1YMR214W 1134 nt18.38■□□□□ 0.53
VAB2P40003 RPP1BYDL130W 321 nt18.29■□□□□ 0.52
VAB2P40003 ATS1YAL020C 1002 nt18.04■□□□□ 0.48
VAB2P40003 TRN1tP(UGG)A 72 nt17.94■□□□□ 0.46
VAB2P40003 SUF9tP(UGG)F 72 nt17.94■□□□□ 0.46
VAB2P40003 SUF8tP(UGG)H 72 nt17.94■□□□□ 0.46
VAB2P40003 tP(UGG)LtP(UGG)L 72 nt17.94■□□□□ 0.46
VAB2P40003 SUF7tP(UGG)M 72 nt17.94■□□□□ 0.46
VAB2P40003 tP(UGG)N1tP(UGG)N1 72 nt17.94■□□□□ 0.46
VAB2P40003 tP(UGG)N2tP(UGG)N2 72 nt17.94■□□□□ 0.46
VAB2P40003 tP(UGG)O1tP(UGG)O1 72 nt17.94■□□□□ 0.46
VAB2P40003 SUF11tP(UGG)O2 72 nt17.94■□□□□ 0.46
VAB2P40003 CCC1YLR220W 969 nt17.81■□□□□ 0.44
VAB2P40003 DBP2YNL112W 1641 nt17.78■□□□□ 0.44
VAB2P40003 SCR1SCR1 522 nt17.42■□□□□ 0.38
VAB2P40003 PET122YER153C 765 nt17.38■□□□□ 0.37
VAB2P40003 tP(UGG)O3tP(UGG)O3 72 nt17.15■□□□□ 0.34
VAB2P40003 RVS167YDR388W 1449 nt16.97■□□□□ 0.31
VAB2P40003 RRN5YLR141W 1092 nt16.95■□□□□ 0.3
VAB2P40003 YBR190WYBR190W 312 nt16.91■□□□□ 0.3
VAB2P40003 RSB1YOR049C 1065 nt16.77■□□□□ 0.28
VAB2P40003 RTC3YHR087W 336 nt16.7■□□□□ 0.26
VAB2P40003 PST2YDR032C 597 nt16.61■□□□□ 0.25
VAB2P40003 YER088W-BYER088W-B 147 nt16.6■□□□□ 0.25
VAB2P40003 YDJ1YNL064C 1230 nt16.59■□□□□ 0.25
VAB2P40003 SHR5YOL110W 714 nt16.44■□□□□ 0.22
VAB2P40003 YKL097CYKL097C 411 nt16.26■□□□□ 0.19
VAB2P40003 GAR1YHR089C 618 nt16.15■□□□□ 0.18
VAB2P40003 SHU1YHL006C 453 nt15.82■□□□□ 0.12
VAB2P40003 DEP1YAL013W 1218 nt15.79■□□□□ 0.12
VAB2P40003 URN1YPR152C 1398 nt15.68■□□□□ 0.1
VAB2P40003 YNL208WYNL208W 600 nt15.64■□□□□ 0.09
VAB2P40003 RPN10YHR200W 807 nt15.63■□□□□ 0.09
VAB2P40003 TIR1YER011W 765 nt15.59■□□□□ 0.09
VAB2P40003 YOR139CYOR139C 393 nt15.44■□□□□ 0.06
VAB2P40003 YAL037C-BYAL037C-B 975 nt15.43■□□□□ 0.06
VAB2P40003 OPI9YLR338W 858 nt15.34■□□□□ 0.05
VAB2P40003 NPL3YDR432W 1245 nt15.3■□□□□ 0.04
VAB2P40003 SSA1YAL005C 1929 nt15.25■□□□□ 0.03
VAB2P40003 SAH1YER043C 1350 nt15.11■□□□□ 0.01
VAB2P40003 YGR021WYGR021W 873 nt15.08■□□□□ 0
VAB2P40003 SRB2YHR041C 633 nt15□□□□□ -0.01
VAB2P40003 YJR018WYJR018W 363 nt15□□□□□ -0.01
VAB2P40003 HOM6YJR139C 1080 nt14.99□□□□□ -0.01
VAB2P40003 YOL037CYOL037C 354 nt14.98□□□□□ -0.01
VAB2P40003 MNP1YGL068W 585 nt14.96□□□□□ -0.01
VAB2P40003 WWM1YFL010C 636 nt14.95□□□□□ -0.02
VAB2P40003 PUN1YLR414C 792 nt14.94□□□□□ -0.02
VAB2P40003 PUT4YOR348C 1884 nt14.91□□□□□ -0.02
VAB2P40003 RPP2BYDR382W 333 nt14.89□□□□□ -0.03
VAB2P40003 tM(CAU)CtM(CAU)C 72 nt14.83□□□□□ -0.04
VAB2P40003 IMT4tM(CAU)E 72 nt14.83□□□□□ -0.04
VAB2P40003 IMT3tM(CAU)J3 72 nt14.83□□□□□ -0.04
VAB2P40003 IMT1tM(CAU)O1 72 nt14.83□□□□□ -0.04
VAB2P40003 IMT2tM(CAU)P 72 nt14.83□□□□□ -0.04
VAB2P40003 ARE1YCR048W 1833 nt14.8□□□□□ -0.04
VAB2P40003 RKM5YLR137W 1104 nt14.78□□□□□ -0.04
VAB2P40003 YJR120WYJR120W 351 nt14.76□□□□□ -0.05
VAB2P40003 YFL021C-AYFL021C-A 855 nt14.74□□□□□ -0.05
VAB2P40003 PTC2YER089C 1395 nt14.64□□□□□ -0.07
VAB2P40003 YHR049C-AYHR049C-A 297 nt14.64□□□□□ -0.07
VAB2P40003 BDH2YAL061W 1254 nt14.62□□□□□ -0.07
VAB2P40003 PUS2YGL063W 1113 nt14.59□□□□□ -0.07
VAB2P40003 YLR281CYLR281C 468 nt14.56□□□□□ -0.08
VAB2P40003 LSM3YLR438C-A 270 nt14.54□□□□□ -0.08
VAB2P40003 POA1YBR022W 534 nt14.54□□□□□ -0.08
VAB2P40003 SSA3YBL075C 1950 nt14.48□□□□□ -0.09
VAB2P40003 WHI5YOR083W 888 nt14.45□□□□□ -0.1
VAB2P40003 MOT3YMR070W 1473 nt14.44□□□□□ -0.1
VAB2P40003 INM2YDR287W 879 nt14.44□□□□□ -0.1
VAB2P40003 NAB2YGL122C 1578 nt14.41□□□□□ -0.1
VAB2P40003 BUD23YCR047C 828 nt14.39□□□□□ -0.11
VAB2P40003 YBL100CYBL100C 315 nt14.35□□□□□ -0.11
VAB2P40003 BSC6YOL137W 1494 nt14.31□□□□□ -0.12
VAB2P40003 FPR4YLR449W 1179 nt14.31□□□□□ -0.12
VAB2P40003 TRM9YML014W 840 nt14.3□□□□□ -0.12
VAB2P40003 DAL1YIR027C 1383 nt14.3□□□□□ -0.12
VAB2P40003 FMP45YDL222C 930 nt14.22□□□□□ -0.13
VAB2P40003 DSK2YMR276W 1122 nt14.21□□□□□ -0.13
VAB2P40003 IMP2'YIL154C 1041 nt14.2□□□□□ -0.14
VAB2P40003 FUN26YAL022C 1554 nt14.18□□□□□ -0.14
VAB2P40003 FIS1YIL065C 468 nt14.17□□□□□ -0.14
VAB2P40003 PHO4YFR034C 939 nt14.14□□□□□ -0.15
VAB2P40003 YCH1YGR203W 447 nt14.11□□□□□ -0.15
VAB2P40003 YLR154C-GYLR154C-G 150 nt14.11□□□□□ -0.15
VAB2P40003 YPR011CYPR011C 981 nt14.1□□□□□ -0.15
VAB2P40003 MRPL8YJL063C 717 nt14.09□□□□□ -0.15
VAB2P40003 CCT6YDR188W 1641 nt14.07□□□□□ -0.16
Retrieved 100 of 7,029 protein–RNA pairs in 11.6 ms