Protein–RNA interactions for Protein: P53973

HDA1, Histone deacetylase HDA1, yeastyeast

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
HDA1P53973 YML009W-BYML009W-B 477 nt23.71■■□□□ 1.39
HDA1P53973 NSR1YGR159C 1245 nt23.44■■□□□ 1.34
HDA1P53973 NOP1YDL014W 984 nt22.95■■□□□ 1.26
HDA1P53973 YKL036CYKL036C 393 nt21.35■■□□□ 1.01
HDA1P53973 MDJ1YFL016C 1536 nt20.88■□□□□ 0.93
HDA1P53973 Q0297Q0297 156 nt20.22■□□□□ 0.83
HDA1P53973 SRX1YKL086W 384 nt20.15■□□□□ 0.82
HDA1P53973 YJL027CYJL027C 417 nt19.96■□□□□ 0.79
HDA1P53973 SCS3YGL126W 1143 nt19.56■□□□□ 0.72
HDA1P53973 YCR051WYCR051W 669 nt19.13■□□□□ 0.65
HDA1P53973 YOL085CYOL085C 342 nt18.57■□□□□ 0.56
HDA1P53973 DBP2YNL112W 1641 nt18.56■□□□□ 0.56
HDA1P53973 PKP1YIL042C 1185 nt18.34■□□□□ 0.53
HDA1P53973 TRN1tP(UGG)A 72 nt18.21■□□□□ 0.51
HDA1P53973 SUF9tP(UGG)F 72 nt18.21■□□□□ 0.51
HDA1P53973 SUF8tP(UGG)H 72 nt18.21■□□□□ 0.51
HDA1P53973 tP(UGG)LtP(UGG)L 72 nt18.21■□□□□ 0.51
HDA1P53973 SUF7tP(UGG)M 72 nt18.21■□□□□ 0.51
HDA1P53973 tP(UGG)N1tP(UGG)N1 72 nt18.21■□□□□ 0.51
HDA1P53973 tP(UGG)N2tP(UGG)N2 72 nt18.21■□□□□ 0.51
HDA1P53973 tP(UGG)O1tP(UGG)O1 72 nt18.21■□□□□ 0.51
HDA1P53973 SUF11tP(UGG)O2 72 nt18.21■□□□□ 0.51
HDA1P53973 RPP1BYDL130W 321 nt18.14■□□□□ 0.49
HDA1P53973 CCC1YLR220W 969 nt18.05■□□□□ 0.48
HDA1P53973 YBR190WYBR190W 312 nt17.64■□□□□ 0.41
HDA1P53973 ATS1YAL020C 1002 nt17.5■□□□□ 0.39
HDA1P53973 PET122YER153C 765 nt17.4■□□□□ 0.38
HDA1P53973 SCJ1YMR214W 1134 nt17.39■□□□□ 0.37
HDA1P53973 RTC3YHR087W 336 nt17.27■□□□□ 0.36
HDA1P53973 tP(UGG)O3tP(UGG)O3 72 nt17.26■□□□□ 0.35
HDA1P53973 RVS167YDR388W 1449 nt17.21■□□□□ 0.34
HDA1P53973 SCR1SCR1 522 nt17.07■□□□□ 0.32
HDA1P53973 RRN5YLR141W 1092 nt16.9■□□□□ 0.3
HDA1P53973 SHR5YOL110W 714 nt16.72■□□□□ 0.27
HDA1P53973 YDJ1YNL064C 1230 nt16.63■□□□□ 0.25
HDA1P53973 YER088W-BYER088W-B 147 nt16.58■□□□□ 0.24
HDA1P53973 RSB1YOR049C 1065 nt16.52■□□□□ 0.24
HDA1P53973 DEP1YAL013W 1218 nt16.33■□□□□ 0.2
HDA1P53973 GAR1YHR089C 618 nt16.32■□□□□ 0.2
HDA1P53973 URN1YPR152C 1398 nt16.25■□□□□ 0.19
HDA1P53973 PST2YDR032C 597 nt16.23■□□□□ 0.19
HDA1P53973 PUT4YOR348C 1884 nt16.08■□□□□ 0.17
HDA1P53973 OPI9YLR338W 858 nt15.96■□□□□ 0.15
HDA1P53973 YNL208WYNL208W 600 nt15.95■□□□□ 0.14
HDA1P53973 SAH1YER043C 1350 nt15.92■□□□□ 0.14
HDA1P53973 RPN10YHR200W 807 nt15.85■□□□□ 0.13
HDA1P53973 ARE1YCR048W 1833 nt15.84■□□□□ 0.13
HDA1P53973 TIR1YER011W 765 nt15.75■□□□□ 0.11
HDA1P53973 SSA1YAL005C 1929 nt15.64■□□□□ 0.09
HDA1P53973 SHU1YHL006C 453 nt15.58■□□□□ 0.08
HDA1P53973 POA1YBR022W 534 nt15.58■□□□□ 0.08
HDA1P53973 YHR049C-AYHR049C-A 297 nt15.57■□□□□ 0.08
HDA1P53973 SRB2YHR041C 633 nt15.56■□□□□ 0.08
HDA1P53973 YKL097CYKL097C 411 nt15.54■□□□□ 0.08
HDA1P53973 YJR018WYJR018W 363 nt15.47■□□□□ 0.07
HDA1P53973 YJR120WYJR120W 351 nt15.44■□□□□ 0.06
HDA1P53973 PUN1YLR414C 792 nt15.43■□□□□ 0.06
HDA1P53973 YAL037C-BYAL037C-B 975 nt15.37■□□□□ 0.05
HDA1P53973 PTC2YER089C 1395 nt15.33■□□□□ 0.04
HDA1P53973 BSC6YOL137W 1494 nt15.2■□□□□ 0.02
HDA1P53973 BUD23YCR047C 828 nt15.19■□□□□ 0.02
HDA1P53973 WWM1YFL010C 636 nt15.14■□□□□ 0.01
HDA1P53973 SSA3YBL075C 1950 nt15.07■□□□□ 0
HDA1P53973 RPP2BYDR382W 333 nt15.07■□□□□ 0
HDA1P53973 YOR139CYOR139C 393 nt15.06■□□□□ 0
HDA1P53973 NAB2YGL122C 1578 nt15.05■□□□□ -0
HDA1P53973 MNP1YGL068W 585 nt15□□□□□ -0.01
HDA1P53973 HOM6YJR139C 1080 nt15□□□□□ -0.01
HDA1P53973 FIS1YIL065C 468 nt14.96□□□□□ -0.01
HDA1P53973 YGR021WYGR021W 873 nt14.9□□□□□ -0.02
HDA1P53973 DAL1YIR027C 1383 nt14.88□□□□□ -0.03
HDA1P53973 BDH2YAL061W 1254 nt14.88□□□□□ -0.03
HDA1P53973 FPR4YLR449W 1179 nt14.88□□□□□ -0.03
HDA1P53973 INM2YDR287W 879 nt14.84□□□□□ -0.03
HDA1P53973 PHO4YFR034C 939 nt14.78□□□□□ -0.04
HDA1P53973 YFL021C-AYFL021C-A 855 nt14.77□□□□□ -0.05
HDA1P53973 YBL100CYBL100C 315 nt14.77□□□□□ -0.05
HDA1P53973 RKM5YLR137W 1104 nt14.76□□□□□ -0.05
HDA1P53973 NPL3YDR432W 1245 nt14.73□□□□□ -0.05
HDA1P53973 LSM3YLR438C-A 270 nt14.66□□□□□ -0.06
HDA1P53973 FUN26YAL022C 1554 nt14.64□□□□□ -0.07
HDA1P53973 YOL037CYOL037C 354 nt14.61□□□□□ -0.07
HDA1P53973 SPT5YML010W 3192 nt14.55□□□□□ -0.08
HDA1P53973 TRM9YML014W 840 nt14.55□□□□□ -0.08
HDA1P53973 YPS1YLR120C 1710 nt14.48□□□□□ -0.09
HDA1P53973 CCT6YDR188W 1641 nt14.44□□□□□ -0.1
HDA1P53973 tM(CAU)CtM(CAU)C 72 nt14.43□□□□□ -0.1
HDA1P53973 IMT4tM(CAU)E 72 nt14.43□□□□□ -0.1
HDA1P53973 IMT3tM(CAU)J3 72 nt14.43□□□□□ -0.1
HDA1P53973 IMT1tM(CAU)O1 72 nt14.43□□□□□ -0.1
HDA1P53973 IMT2tM(CAU)P 72 nt14.43□□□□□ -0.1
HDA1P53973 YDR095CYDR095C 411 nt14.39□□□□□ -0.11
HDA1P53973 YLR281CYLR281C 468 nt14.37□□□□□ -0.11
HDA1P53973 WHI5YOR083W 888 nt14.31□□□□□ -0.12
HDA1P53973 ALF1YNL148C 765 nt14.3□□□□□ -0.12
HDA1P53973 PUS2YGL063W 1113 nt14.26□□□□□ -0.13
HDA1P53973 YHR165W-AYHR165W-A 312 nt14.26□□□□□ -0.13
HDA1P53973 MEP2YNL142W 1500 nt14.24□□□□□ -0.13
HDA1P53973 SUF2tP(AGG)C 72 nt14.19□□□□□ -0.14
HDA1P53973 SUF10tP(AGG)N 72 nt14.19□□□□□ -0.14
Retrieved 100 of 7,029 protein–RNA pairs in 11.5 ms