Protein–RNA interactions for Protein: P54860

UFD2, E4 ubiquitin-protein ligase UFD2, yeastyeast

Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UFD2P54860 YML009W-BYML009W-B 477 nt23.89■■□□□ 1.41
UFD2P54860 NSR1YGR159C 1245 nt23.62■■□□□ 1.37
UFD2P54860 NOP1YDL014W 984 nt23.23■■□□□ 1.31
UFD2P54860 YKL036CYKL036C 393 nt21.55■■□□□ 1.04
UFD2P54860 MDJ1YFL016C 1536 nt20.92■□□□□ 0.94
UFD2P54860 Q0297Q0297 156 nt20.39■□□□□ 0.85
UFD2P54860 SRX1YKL086W 384 nt20.32■□□□□ 0.84
UFD2P54860 YJL027CYJL027C 417 nt20.14■□□□□ 0.81
UFD2P54860 SCS3YGL126W 1143 nt19.69■□□□□ 0.74
UFD2P54860 YCR051WYCR051W 669 nt19.28■□□□□ 0.68
UFD2P54860 YOL085CYOL085C 342 nt18.68■□□□□ 0.58
UFD2P54860 DBP2YNL112W 1641 nt18.56■□□□□ 0.56
UFD2P54860 PKP1YIL042C 1185 nt18.39■□□□□ 0.53
UFD2P54860 TRN1tP(UGG)A 72 nt18.34■□□□□ 0.53
UFD2P54860 SUF9tP(UGG)F 72 nt18.34■□□□□ 0.53
UFD2P54860 SUF8tP(UGG)H 72 nt18.34■□□□□ 0.53
UFD2P54860 tP(UGG)LtP(UGG)L 72 nt18.34■□□□□ 0.53
UFD2P54860 SUF7tP(UGG)M 72 nt18.34■□□□□ 0.53
UFD2P54860 tP(UGG)N1tP(UGG)N1 72 nt18.34■□□□□ 0.53
UFD2P54860 tP(UGG)N2tP(UGG)N2 72 nt18.34■□□□□ 0.53
UFD2P54860 tP(UGG)O1tP(UGG)O1 72 nt18.34■□□□□ 0.53
UFD2P54860 SUF11tP(UGG)O2 72 nt18.34■□□□□ 0.53
UFD2P54860 RPP1BYDL130W 321 nt18.3■□□□□ 0.52
UFD2P54860 CCC1YLR220W 969 nt18.13■□□□□ 0.49
UFD2P54860 YBR190WYBR190W 312 nt17.77■□□□□ 0.44
UFD2P54860 ATS1YAL020C 1002 nt17.63■□□□□ 0.41
UFD2P54860 SCJ1YMR214W 1134 nt17.54■□□□□ 0.4
UFD2P54860 PET122YER153C 765 nt17.5■□□□□ 0.39
UFD2P54860 RVS167YDR388W 1449 nt17.43■□□□□ 0.38
UFD2P54860 RTC3YHR087W 336 nt17.38■□□□□ 0.37
UFD2P54860 tP(UGG)O3tP(UGG)O3 72 nt17.37■□□□□ 0.37
UFD2P54860 SCR1SCR1 522 nt17.29■□□□□ 0.36
UFD2P54860 RRN5YLR141W 1092 nt16.98■□□□□ 0.31
UFD2P54860 SHR5YOL110W 714 nt16.87■□□□□ 0.29
UFD2P54860 YDJ1YNL064C 1230 nt16.8■□□□□ 0.28
UFD2P54860 YER088W-BYER088W-B 147 nt16.66■□□□□ 0.26
UFD2P54860 RSB1YOR049C 1065 nt16.66■□□□□ 0.26
UFD2P54860 GAR1YHR089C 618 nt16.4■□□□□ 0.22
UFD2P54860 DEP1YAL013W 1218 nt16.36■□□□□ 0.21
UFD2P54860 URN1YPR152C 1398 nt16.33■□□□□ 0.2
UFD2P54860 PST2YDR032C 597 nt16.31■□□□□ 0.2
UFD2P54860 YNL208WYNL208W 600 nt16.1■□□□□ 0.17
UFD2P54860 RPN10YHR200W 807 nt16.09■□□□□ 0.17
UFD2P54860 PUT4YOR348C 1884 nt16.09■□□□□ 0.17
UFD2P54860 OPI9YLR338W 858 nt16.07■□□□□ 0.16
UFD2P54860 SAH1YER043C 1350 nt15.94■□□□□ 0.14
UFD2P54860 TIR1YER011W 765 nt15.85■□□□□ 0.13
UFD2P54860 ARE1YCR048W 1833 nt15.83■□□□□ 0.12
UFD2P54860 YKL097CYKL097C 411 nt15.71■□□□□ 0.11
UFD2P54860 SSA1YAL005C 1929 nt15.66■□□□□ 0.1
UFD2P54860 SHU1YHL006C 453 nt15.63■□□□□ 0.09
UFD2P54860 YHR049C-AYHR049C-A 297 nt15.63■□□□□ 0.09
UFD2P54860 PUN1YLR414C 792 nt15.6■□□□□ 0.09
UFD2P54860 YJR018WYJR018W 363 nt15.57■□□□□ 0.08
UFD2P54860 POA1YBR022W 534 nt15.57■□□□□ 0.08
UFD2P54860 SRB2YHR041C 633 nt15.45■□□□□ 0.06
UFD2P54860 YJR120WYJR120W 351 nt15.41■□□□□ 0.06
UFD2P54860 PTC2YER089C 1395 nt15.39■□□□□ 0.05
UFD2P54860 SSA3YBL075C 1950 nt15.38■□□□□ 0.05
UFD2P54860 YAL037C-BYAL037C-B 975 nt15.35■□□□□ 0.05
UFD2P54860 RPP2BYDR382W 333 nt15.28■□□□□ 0.04
UFD2P54860 BUD23YCR047C 828 nt15.26■□□□□ 0.03
UFD2P54860 BSC6YOL137W 1494 nt15.23■□□□□ 0.03
UFD2P54860 WWM1YFL010C 636 nt15.18■□□□□ 0.02
UFD2P54860 NAB2YGL122C 1578 nt15.17■□□□□ 0.02
UFD2P54860 YGR021WYGR021W 873 nt15.11■□□□□ 0.01
UFD2P54860 HOM6YJR139C 1080 nt15.09■□□□□ 0.01
UFD2P54860 YOR139CYOR139C 393 nt15.09■□□□□ 0.01
UFD2P54860 MNP1YGL068W 585 nt15.05■□□□□ -0
UFD2P54860 FIS1YIL065C 468 nt15.02■□□□□ -0
UFD2P54860 BDH2YAL061W 1254 nt15.01□□□□□ -0.01
UFD2P54860 DAL1YIR027C 1383 nt15□□□□□ -0.01
UFD2P54860 INM2YDR287W 879 nt14.99□□□□□ -0.01
UFD2P54860 Q0182Q0182 405 nt14.97□□□□□ -0.01
UFD2P54860 FPR4YLR449W 1179 nt14.96□□□□□ -0.01
UFD2P54860 YFL021C-AYFL021C-A 855 nt14.93□□□□□ -0.02
UFD2P54860 NPL3YDR432W 1245 nt14.91□□□□□ -0.02
UFD2P54860 YBL100CYBL100C 315 nt14.89□□□□□ -0.03
UFD2P54860 PHO4YFR034C 939 nt14.87□□□□□ -0.03
UFD2P54860 RKM5YLR137W 1104 nt14.86□□□□□ -0.03
UFD2P54860 LSM3YLR438C-A 270 nt14.82□□□□□ -0.04
UFD2P54860 YOL037CYOL037C 354 nt14.81□□□□□ -0.04
UFD2P54860 FUN26YAL022C 1554 nt14.72□□□□□ -0.05
UFD2P54860 TRM9YML014W 840 nt14.68□□□□□ -0.06
UFD2P54860 MOT3YMR070W 1473 nt14.61□□□□□ -0.07
UFD2P54860 CCT6YDR188W 1641 nt14.56□□□□□ -0.08
UFD2P54860 YPS1YLR120C 1710 nt14.54□□□□□ -0.08
UFD2P54860 tM(CAU)CtM(CAU)C 72 nt14.49□□□□□ -0.09
UFD2P54860 IMT4tM(CAU)E 72 nt14.49□□□□□ -0.09
UFD2P54860 IMT3tM(CAU)J3 72 nt14.49□□□□□ -0.09
UFD2P54860 IMT1tM(CAU)O1 72 nt14.49□□□□□ -0.09
UFD2P54860 IMT2tM(CAU)P 72 nt14.49□□□□□ -0.09
UFD2P54860 YDR095CYDR095C 411 nt14.47□□□□□ -0.09
UFD2P54860 YLR281CYLR281C 468 nt14.46□□□□□ -0.09
UFD2P54860 ALF1YNL148C 765 nt14.46□□□□□ -0.09
UFD2P54860 SPT5YML010W 3192 nt14.43□□□□□ -0.1
UFD2P54860 SUF2tP(AGG)C 72 nt14.4□□□□□ -0.1
UFD2P54860 SUF10tP(AGG)N 72 nt14.4□□□□□ -0.1
UFD2P54860 WHI5YOR083W 888 nt14.4□□□□□ -0.1
UFD2P54860 PUS2YGL063W 1113 nt14.35□□□□□ -0.11
Retrieved 100 of 7,029 protein–RNA pairs in 15.2 ms