Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CDK7-203ENST00000504147 722 ntTSL 511.65□□□□□ -0.544e-8■■□□□ 14.1
YBX3P16989 RNF14-213ENST00000512565 670 ntTSL 311.54□□□□□ -0.564e-8■■□□□ 14.1
YBX3P16989 ME2-215ENST00000639688 4344 ntTSL 59.6□□□□□ -0.874e-8■■□□□ 14.1
YBX3P16989 RNF14-205ENST00000394520 4235 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.894e-8■■□□□ 14.1
YBX3P16989 ME2-207ENST00000638768 682 ntTSL 38.92□□□□□ -0.984e-8■■□□□ 14.1
YBX3P16989 C8orf59-205ENST00000523281 756 ntTSL 58.27□□□□□ -1.095e-15■■□□□ 14.1
YBX3P16989 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.134e-8■■□□□ 14.1
YBX3P16989 RNF14-216ENST00000515613 753 ntTSL 37.89□□□□□ -1.154e-8■■□□□ 14.1
YBX3P16989 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.274e-8■■□□□ 14.1
YBX3P16989 RPL24P4-201ENST00000326586 421 ntBASIC10.26□□□□□ -0.775e-7■■□□□ 14.1
YBX3P16989 ICE2-217ENST00000561446 564 ntTSL 424.65■■□□□ 1.541e-7■■□□□ 14.1
YBX3P16989 ICE2-211ENST00000560895 571 ntTSL 424.65■■□□□ 1.541e-7■■□□□ 14.1
YBX3P16989 DNMT1-225ENST00000591798 521 ntTSL 312.54□□□□□ -0.41e-7■■□□□ 14.1
YBX3P16989 ICE2-205ENST00000558512 1470 ntTSL 1 (best)12.14□□□□□ -0.471e-7■■□□□ 14.1
YBX3P16989 ICE2-213ENST00000561114 3796 ntTSL 1 (best) BASIC11.66□□□□□ -0.541e-7■■□□□ 14.1
YBX3P16989 ICE2-203ENST00000558181 7060 ntTSL 1 (best)7.33□□□□□ -1.241e-7■■□□□ 14.1
YBX3P16989 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.391e-7■■□□□ 14.1
YBX3P16989 AKT2-216ENST00000476266 3309 ntTSL 512.67□□□□□ -0.381e-7■■□□□ 14.1
YBX3P16989 AKT2-233ENST00000578975 3337 nt12.43□□□□□ -0.421e-7■■□□□ 14.1
YBX3P16989 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.172e-11■■□□□ 14.1
YBX3P16989 STT3B-202ENST00000423527 1664 ntTSL 231.16■■■□□ 2.588e-10■■□□□ 14.1
YBX3P16989 STT3B-204ENST00000453168 1888 ntTSL 1 (best)29.11■■■□□ 2.258e-10■■□□□ 14.1
YBX3P16989 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.188e-10■■□□□ 14.1
YBX3P16989 STT3B-205ENST00000462235 801 ntTSL 33.78□□□□□ -1.88e-10■■□□□ 14.1
YBX3P16989 ATXN2L-218ENST00000565971 3264 ntTSL 1 (best)15.08■□□□□ 05e-9■■□□□ 14.1
YBX3P16989 VAPA-207ENST00000583879 719 ntTSL 27.53□□□□□ -1.23e-8■■□□□ 14.1
YBX3P16989 VAPA-206ENST00000583475 939 ntTSL 25.79□□□□□ -1.483e-8■■□□□ 14.1
YBX3P16989 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC7.58□□□□□ -1.23e-7■■□□□ 14.1
YBX3P16989 CMTM3-206ENST00000563672 460 ntTSL 426.33■■□□□ 1.814e-8■■□□□ 14.1
YBX3P16989 CSNK2A2-204ENST00000565188 547 ntTSL 225.73■■□□□ 1.714e-8■■□□□ 14.1
YBX3P16989 CMTM3-204ENST00000562357 792 ntTSL 423.55■■□□□ 1.364e-8■■□□□ 14.1
YBX3P16989 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.274e-8■■□□□ 14.1
YBX3P16989 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.264e-8■■□□□ 14.1
YBX3P16989 SREBF1-213ENST00000485080 1230 ntTSL 522.83■■□□□ 1.254e-8■■□□□ 14.1
YBX3P16989 SREBF1-218ENST00000578469 588 ntTSL 321.1■□□□□ 0.974e-8■■□□□ 14.1
YBX3P16989 SREBF1-204ENST00000395756 3026 ntTSL 219.27■□□□□ 0.684e-8■■□□□ 14.1
YBX3P16989 DPM3-202ENST00000368399 517 ntBASIC19.23■□□□□ 0.674e-8■■□□□ 14.1
YBX3P16989 SLC43A3-212ENST00000529113 541 ntTSL 517.98■□□□□ 0.474e-8■■□□□ 14.1
YBX3P16989 TXNDC17-204ENST00000571957 392 ntTSL 217.2■□□□□ 0.344e-8■■□□□ 14.1
YBX3P16989 SREBF1-203ENST00000395751 4653 ntTSL 217■□□□□ 0.314e-8■■□□□ 14.1
YBX3P16989 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.214e-8■■□□□ 14.1
YBX3P16989 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.034e-8■■□□□ 14.1
YBX3P16989 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.124e-8■■□□□ 14.1
YBX3P16989 SCAMP4-207ENST00000472442 2973 ntTSL 214.24□□□□□ -0.134e-8■■□□□ 14.1
YBX3P16989 CRCP-207ENST00000492264 731 ntTSL 311.72□□□□□ -0.534e-8■■□□□ 14.1
YBX3P16989 COPS5-207ENST00000518768 565 ntTSL 411.71□□□□□ -0.534e-8■■□□□ 14.1
YBX3P16989 COPS5-208ENST00000519057 566 ntTSL 47.98□□□□□ -1.134e-8■■□□□ 14.1
YBX3P16989 CDC42BPA-211ENST00000466538 568 ntTSL 35.96□□□□□ -1.464e-8■■□□□ 14.1
YBX3P16989 COPS5-209ENST00000519963 764 ntTSL 54.89□□□□□ -1.634e-8■■□□□ 14.1
YBX3P16989 TYMS-204ENST00000579128 925 ntTSL 216.9■□□□□ 0.37e-8■■□□□ 14.1
YBX3P16989 POLD1-212ENST00000600859 3474 ntTSL 214.13□□□□□ -0.157e-8■■□□□ 14.1
YBX3P16989 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.177e-8■■□□□ 14.1
YBX3P16989 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC13.95□□□□□ -0.187e-8■■□□□ 14.1
YBX3P16989 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.82□□□□□ -0.27e-8■■□□□ 14.1
YBX3P16989 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.257e-8■■□□□ 14.1
YBX3P16989 H2AFY-218ENST00000512507 10982 ntTSL 1 (best)9.58□□□□□ -0.881e-10■■□□□ 14.1
YBX3P16989 MRPL4-208ENST00000590702 876 ntTSL 520.39■□□□□ 0.858e-10■■□□□ 14.1
YBX3P16989 ACSM3-213ENST00000568235 558 ntTSL 416.78■□□□□ 0.281e-13■■□□□ 14.1
YBX3P16989 EPHA2-204ENST00000480202 795 ntTSL 523.43■■□□□ 1.341e-8■■□□□ 14.1
YBX3P16989 IGF2R-203ENST00000475584 597 ntTSL 319.89■□□□□ 0.776e-9■■□□□ 14.1
YBX3P16989 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.021e-8■■□□□ 14.1
YBX3P16989 HPS1-214ENST00000498219 845 ntTSL 519.18■□□□□ 0.663e-7■■□□□ 14.1
YBX3P16989 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.19■□□□□ 0.53e-7■■□□□ 14.1
YBX3P16989 HPS1-212ENST00000480020 795 ntTSL 516.02■□□□□ 0.163e-7■■□□□ 14.1
YBX3P16989 HPS1-201ENST00000325103 3703 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.143e-7■■□□□ 14.1
YBX3P16989 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.163e-7■■□□□ 14.1
YBX3P16989 HPS1-204ENST00000361490 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.363e-7■■□□□ 14.1
YBX3P16989 HPS1-208ENST00000467246 2791 ntTSL 1 (best)12.24□□□□□ -0.453e-7■■□□□ 14.1
YBX3P16989 C1QBP-202ENST00000570805 688 ntTSL 313.73□□□□□ -0.216e-7■■□□□ 14.1
YBX3P16989 DDB1-223ENST00000543658 571 ntTSL 414.46□□□□□ -0.093e-9■■□□□ 14.1
YBX3P16989 TMEM219-209ENST00000602948 588 ntTSL 224.93■■□□□ 1.589e-7■■□□□ 14.1
YBX3P16989 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.939e-7■■□□□ 14.1
YBX3P16989 TMEM219-208ENST00000575829 721 ntTSL 516.66■□□□□ 0.269e-7■■□□□ 14.1
YBX3P16989 TMEM219-205ENST00000569445 760 ntTSL 214.55□□□□□ -0.089e-7■■□□□ 14.1
YBX3P16989 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.274e-7■■□□□ 14.1
YBX3P16989 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC13.38□□□□□ -0.274e-7■■□□□ 14.1
YBX3P16989 MTMR2-202ENST00000352297 3350 ntTSL 1 (best) BASIC13.17□□□□□ -0.34e-7■■□□□ 14.1
YBX3P16989 MTMR2-204ENST00000409459 3420 ntTSL 5 BASIC9.69□□□□□ -0.864e-7■■□□□ 14.1
YBX3P16989 MTMR2-205ENST00000444541 2018 ntTSL 59.63□□□□□ -0.874e-7■■□□□ 14.1
YBX3P16989 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.56e-11■■□□□ 14.1
YBX3P16989 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.36e-11■■□□□ 14.1
YBX3P16989 GRINA-210ENST00000534791 1050 ntTSL 514.31□□□□□ -0.126e-11■■□□□ 14.1
YBX3P16989 GRINA-208ENST00000533044 564 ntTSL 312.75□□□□□ -0.376e-11■■□□□ 14.1
YBX3P16989 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.98■□□□□ 0.791e-7■■□□□ 14.1
YBX3P16989 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.51e-7■■□□□ 14.1
YBX3P16989 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC18.11■□□□□ 0.491e-7■■□□□ 14.1
YBX3P16989 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.16■□□□□ 0.341e-7■■□□□ 14.1
YBX3P16989 OXA1L-209ENST00000495424 1679 ntTSL 215.32■□□□□ 0.041e-7■■□□□ 14.1
YBX3P16989 OXA1L-207ENST00000481218 1596 ntTSL 510.81□□□□□ -0.681e-7■■□□□ 14.1
YBX3P16989 OXA1L-213ENST00000612549 2971 ntTSL 1 (best) BASIC9.99□□□□□ -0.811e-7■■□□□ 14.1
YBX3P16989 SEC13-219ENST00000492602 393 ntTSL 38.38□□□□□ -1.075e-17■■□□□ 14.1
YBX3P16989 SRM-202ENST00000459997 731 ntTSL 527.97■■■□□ 2.072e-12■■□□□ 14.1
YBX3P16989 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.248e-7■■□□□ 14.1
YBX3P16989 Y_RNA.474-201ENST00000384341 102 ntBASIC5.91□□□□□ -1.464e-35■■□□□ 14.1
YBX3P16989 C9orf78-206ENST00000492991 478 ntTSL 222.12■■□□□ 1.139e-13■■□□□ 14.1
YBX3P16989 BRD4-201ENST00000263377 7169 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.561e-7■■□□□ 14.1
YBX3P16989 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.143e-7■■□□□ 14
YBX3P16989 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.88■■□□□ 1.093e-7■■□□□ 14
YBX3P16989 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.013e-7■■□□□ 14
YBX3P16989 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.463e-7■■□□□ 14
Retrieved 100 of 29,075 protein–RNA pairs in 569.2 ms