RNA–Protein interactions for RNA: ENST00000459997.1

SRM-202, Transcript of spermidine synthase, humanhuman

TSL 5

Gene SRM, Length 731 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-202ENST00000459997 NISCHQ9Y2I1 1504 aa51.71■■■■■ 5.87
SRM-202ENST00000459997 CCDC180Q9P1Z9 1646 aa46.25■■■■■ 4.99
SRM-202ENST00000459997 ABCC9O60706 1549 aa45.82■■■■■ 4.92
SRM-202ENST00000459997 RB1CC1Q8TDY2 1594 aa43.81■■■■■ 4.6
SRM-202ENST00000459997 NACADO15069 1562 aa43.6■■■■■ 4.57
SRM-202ENST00000459997 DCAF8L2P0C7V8 631 aa43.46■■■■■ 4.55
SRM-202ENST00000459997 MYO15BQ96JP2 1530 aa43.12■■■■■ 4.49
SRM-202ENST00000459997 ZCCHC6Q5VYS8 1495 aaKnown RBP42.96■■■■■ 4.47
SRM-202ENST00000459997 UNC13AQ9UPW8 1703 aa42.84■■■■■ 4.45
SRM-202ENST00000459997 DCAF1Q9Y4B6 1507 aa42.74■■■■■ 4.43
SRM-202ENST00000459997 PABPN1Q86U42 306 aaKnown RBP eCLIP42.69■■■■■ 4.42
SRM-202ENST00000459997 DNAJC5BQ9UF47 199 aa42.53■■■■■ 4.4
SRM-202ENST00000459997 BICRAQ9NZM4 1560 aa42.5■■■■■ 4.39
SRM-202ENST00000459997 SCRIBQ14160 1630 aa42.19■■■■■ 4.34
SRM-202ENST00000459997 SHROOM4Q9ULL8 1493 aa41.98■■■■■ 4.31
SRM-202ENST00000459997 EIF4G1Q04637 1599 aaKnown RBP41.43■■■■■ 4.22
SRM-202ENST00000459997 CC2D2AQ9P2K1 1620 aa41.41■■■■■ 4.22
SRM-202ENST00000459997 CECR2Q9BXF3 1484 aa41.21■■■■■ 4.19
SRM-202ENST00000459997 SMARCA4P51532 1647 aa40.27■■■■■ 4.04
SRM-202ENST00000459997 NCAPD3P42695 1498 aa40.22■■■■■ 4.03
SRM-202ENST00000459997 ATAD2BQ9ULI0 1458 aa40.17■■■■■ 4.02
SRM-202ENST00000459997 BAZ1AQ9NRL2 1556 aaPredicted RBP40.13■■■■■ 4.01
SRM-202ENST00000459997 SMARCA2P51531 1590 aa40.11■■■■■ 4.01
SRM-202ENST00000459997 HMGXB3Q12766 1538 aa40■■■■□ 3.99
SRM-202ENST00000459997 MROH2BQ7Z745 1585 aa39.86■■■■□ 3.97
SRM-202ENST00000459997 PEG3Q9GZU2 1588 aa39.86■■■■□ 3.97
SRM-202ENST00000459997 BAZ1BQ9UIG0 1483 aaKnown RBP39.83■■■■□ 3.97
SRM-202ENST00000459997 ERCC6Q03468 1493 aa39.54■■■■□ 3.92
SRM-202ENST00000459997 NESP48681 1621 aa39.47■■■■□ 3.91
SRM-202ENST00000459997 WIZO95785 1651 aa39.42■■■■□ 3.9
SRM-202ENST00000459997 CUX2O14529 1486 aa39.3■■■■□ 3.88
SRM-202ENST00000459997 LAMC3Q9Y6N6 1575 aa39.28■■■■□ 3.88
SRM-202ENST00000459997 RSF1Q96T23 1441 aaPredicted RBP39.17■■■■□ 3.86
SRM-202ENST00000459997 CADPSQ9ULU8 1353 aa39.02■■■■□ 3.84
SRM-202ENST00000459997 PDS5BQ9NTI5 1447 aa39.02■■■■□ 3.84
SRM-202ENST00000459997 KIF21AQ7Z4S6 1674 aa39.02■■■■□ 3.84
SRM-202ENST00000459997 THOC2Q8NI27 1593 aaKnown RBP39.01■■■■□ 3.84
SRM-202ENST00000459997 TOP2AP11388 1531 aaKnown RBP38.95■■■■□ 3.83
SRM-202ENST00000459997 DNAJC5Q9H3Z4 198 aa38.73■■■■□ 3.79
SRM-202ENST00000459997 CFTRP13569 1480 aa38.67■■■■□ 3.78
SRM-202ENST00000459997 MRC2Q9UBG0 1479 aa38.67■■■■□ 3.78
SRM-202ENST00000459997 CEP164Q9UPV0 1460 aa38.61■■■■□ 3.77
SRM-202ENST00000459997 FANCD2Q9BXW9 1451 aa38.6■■■■□ 3.77
SRM-202ENST00000459997 WDR62O43379 1518 aa38.57■■■■□ 3.76
SRM-202ENST00000459997 CCDC88BA6NC98 1476 aa38.49■■■■□ 3.75
SRM-202ENST00000459997 PRDM2Q13029 1718 aa38.39■■■■□ 3.74
SRM-202ENST00000459997 URB2Q14146 1524 aaKnown RBP38.26■■■■□ 3.72
SRM-202ENST00000459997 TOPBP1Q92547 1522 aa37.92■■■■□ 3.66
SRM-202ENST00000459997 ABCC8Q09428 1581 aa37.86■■■■□ 3.65
SRM-202ENST00000459997 DNMBPQ6XZF7 1577 aa37.84■■■■□ 3.65
SRM-202ENST00000459997 IFT140Q96RY7 1462 aa37.81■■■■□ 3.64
SRM-202ENST00000459997 SUPT5HO00267 1087 aaKnown RBP37.78■■■■□ 3.64
SRM-202ENST00000459997 ZNF608Q9ULD9 1512 aaPredicted RBP37.71■■■■□ 3.63
SRM-202ENST00000459997 EIF4G3O43432 1585 aaKnown RBP37.56■■■■□ 3.6
SRM-202ENST00000459997 TARBP1Q13395 1621 aaKnown RBP37.56■■■■□ 3.6
SRM-202ENST00000459997 POLA1P09884 1462 aaPredicted RBP37.56■■■■□ 3.6
SRM-202ENST00000459997 OSCARQ8IYS5 282 aa37.54■■■■□ 3.6
SRM-202ENST00000459997 CUX1P39880 1505 aa37.43■■■■□ 3.58
SRM-202ENST00000459997 AQRO60306 1485 aaKnown RBP eCLIP37.42■■■■□ 3.582e-6■■■■■ 28.5
SRM-202ENST00000459997 RAD54L2Q9Y4B4 1467 aa37.41■■■■□ 3.58
SRM-202ENST00000459997 FGD5Q6ZNL6 1462 aa37.39■■■■□ 3.58
SRM-202ENST00000459997 SOGA1O94964 1423 aa37.39■■■■□ 3.58
SRM-202ENST00000459997 TRIM41Q8WV44 630 aa37.26■■■■□ 3.56
SRM-202ENST00000459997 TDRD9Q8NDG6 1382 aaKnown RBP37.26■■■■□ 3.55
SRM-202ENST00000459997 CHD1O14646 1710 aa37.21■■■■□ 3.55
SRM-202ENST00000459997 WDR97A6NE52 1622 aa37.21■■■■□ 3.55
SRM-202ENST00000459997 FBLN2P98095 1184 aa37.09■■■■□ 3.53
SRM-202ENST00000459997 SNAPC4Q5SXM2 1469 aa37.07■■■■□ 3.52
SRM-202ENST00000459997 RIMBP3CA6NJZ7 1639 aa37.06■■■■□ 3.52
SRM-202ENST00000459997 RIMBP3BA6NNM3 1639 aa37.06■■■■□ 3.52
SRM-202ENST00000459997 RIMBP3Q9UFD9 1639 aa37.06■■■■□ 3.52
SRM-202ENST00000459997 GRIN2BQ13224 1484 aa37.02■■■■□ 3.52
SRM-202ENST00000459997 ABCA10Q8WWZ4 1543 aa36.99■■■■□ 3.51
SRM-202ENST00000459997 MAGI1Q96QZ7 1491 aaPredicted RBP36.98■■■■□ 3.51
SRM-202ENST00000459997 ARHGEF11O15085 1522 aa36.98■■■■□ 3.51
SRM-202ENST00000459997 BIVM-ERCC5R4GMW8 1640 aa36.97■■■■□ 3.51
SRM-202ENST00000459997 WRNQ14191 1432 aaPredicted RBP eCLIP36.97■■■■□ 3.51
SRM-202ENST00000459997 PBRM1Q86U86 1689 aa36.96■■■■□ 3.51
SRM-202ENST00000459997 TOP2BQ02880 1626 aa36.96■■■■□ 3.51
SRM-202ENST00000459997 GAPVD1Q14C86 1478 aa36.95■■■■□ 3.51
SRM-202ENST00000459997 SYNJ1O43426 1573 aa36.94■■■■□ 3.5
SRM-202ENST00000459997 ABCA5Q8WWZ7 1642 aa36.92■■■■□ 3.5
SRM-202ENST00000459997 CHMP7Q8WUX9 453 aaPredicted RBP36.88■■■■□ 3.49
SRM-202ENST00000459997 SYNJ2O15056 1496 aa36.85■■■■□ 3.49
SRM-202ENST00000459997 CLASP1Q7Z460 1538 aa36.76■■■■□ 3.48
SRM-202ENST00000459997 CYB5RLQ6IPT4 315 aa36.65■■■■□ 3.46
SRM-202ENST00000459997 ARAP1Q96P48 1450 aa36.64■■■■□ 3.46
SRM-202ENST00000459997 ADAMTS12P58397 1594 aa36.61■■■■□ 3.45
SRM-202ENST00000459997 GRIN2AQ12879 1464 aa36.56■■■■□ 3.44
SRM-202ENST00000459997 ERICH3Q5RHP9 1530 aa36.54■■■■□ 3.44
SRM-202ENST00000459997 FHAD1B1AJZ9 1412 aa36.5■■■■□ 3.43
SRM-202ENST00000459997 CEP170Q5SW79 1584 aa36.41■■■■□ 3.42
SRM-202ENST00000459997 NUP160Q12769 1436 aa36.4■■■■□ 3.42
SRM-202ENST00000459997 KIF27Q86VH2 1401 aa36.24■■■■□ 3.39
SRM-202ENST00000459997 ERCC6L2Q5T890 1561 aa36.23■■■■□ 3.39
SRM-202ENST00000459997 SHROOM2Q13796 1616 aa36.21■■■■□ 3.39
SRM-202ENST00000459997 IGF1RP08069 1367 aa36.14■■■■□ 3.38
SRM-202ENST00000459997 CUL7Q14999 1698 aa36.13■■■■□ 3.37
SRM-202ENST00000459997 TRHP20396 242 aaPredicted RBP36.12■■■■□ 3.37
SRM-202ENST00000459997 RUSC2Q8N2Y8 1516 aa36.09■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms