RNA–Protein interactions for RNA: ENST00000467246.5

HPS1-208, Transcript of HPS1, biogenesis of lysosomal organelles complex 3 subunit 1, humanhuman

TSL 1 (best)

Gene HPS1, Length 2,791 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS1-208ENST00000467246 NISCHQ9Y2I1 1504 aa24.64■■□□□ 1.54
HPS1-208ENST00000467246 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
HPS1-208ENST00000467246 ZCCHC6Q5VYS8 1495 aaKnown RBP20.78■□□□□ 0.92
HPS1-208ENST00000467246 SHROOM4Q9ULL8 1493 aa20.71■□□□□ 0.91
HPS1-208ENST00000467246 DCAF8L2P0C7V8 631 aa20.49■□□□□ 0.87
HPS1-208ENST00000467246 DCAF1Q9Y4B6 1507 aa20.24■□□□□ 0.83
HPS1-208ENST00000467246 SUPT5HO00267 1087 aaKnown RBP20.16■□□□□ 0.82
HPS1-208ENST00000467246 ABCC9O60706 1549 aa19.82■□□□□ 0.76
HPS1-208ENST00000467246 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
HPS1-208ENST00000467246 SCRIBQ14160 1630 aa19.69■□□□□ 0.74
HPS1-208ENST00000467246 NACADO15069 1562 aa19.61■□□□□ 0.73
HPS1-208ENST00000467246 CHIC1Q5VXU3 224 aa19.46■□□□□ 0.71
HPS1-208ENST00000467246 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
HPS1-208ENST00000467246 RB1CC1Q8TDY2 1594 aa19.35■□□□□ 0.69
HPS1-208ENST00000467246 CECR2Q9BXF3 1484 aa19.23■□□□□ 0.67
HPS1-208ENST00000467246 MROH2BQ7Z745 1585 aa19.13■□□□□ 0.65
HPS1-208ENST00000467246 UNC13AQ9UPW8 1703 aa19.02■□□□□ 0.64
HPS1-208ENST00000467246 WIZO95785 1651 aa18.99■□□□□ 0.63
HPS1-208ENST00000467246 BAZ1AQ9NRL2 1556 aaPredicted RBP18.95■□□□□ 0.62
HPS1-208ENST00000467246 PABPN1Q86U42 306 aaKnown RBP eCLIP18.89■□□□□ 0.62
HPS1-208ENST00000467246 LOC105371045A0A1W2PR82 267 aa18.86■□□□□ 0.61
HPS1-208ENST00000467246 BICRAQ9NZM4 1560 aa18.84■□□□□ 0.61
HPS1-208ENST00000467246 SMARCA4P51532 1647 aa18.83■□□□□ 0.6
HPS1-208ENST00000467246 TRIM41Q8WV44 630 aa18.82■□□□□ 0.6
HPS1-208ENST00000467246 TOP2AP11388 1531 aaKnown RBP18.71■□□□□ 0.59
HPS1-208ENST00000467246 FAM9AQ8IZU1 332 aaPredicted RBP18.63■□□□□ 0.57
HPS1-208ENST00000467246 CCDC88BA6NC98 1476 aa18.63■□□□□ 0.57
HPS1-208ENST00000467246 EIF4G1Q04637 1599 aaKnown RBP18.6■□□□□ 0.57
HPS1-208ENST00000467246 SMARCA2P51531 1590 aa18.59■□□□□ 0.57
HPS1-208ENST00000467246 PEG3Q9GZU2 1588 aa18.5■□□□□ 0.55
HPS1-208ENST00000467246 PCGF6Q9BYE7 350 aa18.47■□□□□ 0.55
HPS1-208ENST00000467246 EHMT2Q96KQ7 1210 aa18.45■□□□□ 0.54
HPS1-208ENST00000467246 ABCC8Q09428 1581 aa18.44■□□□□ 0.54
HPS1-208ENST00000467246 ATAD2BQ9ULI0 1458 aa18.44■□□□□ 0.54
HPS1-208ENST00000467246 BAZ1BQ9UIG0 1483 aaKnown RBP18.36■□□□□ 0.53
HPS1-208ENST00000467246 HRCP23327 699 aa18.24■□□□□ 0.51
HPS1-208ENST00000467246 TRIM26Q12899 539 aaPredicted RBP18.22■□□□□ 0.51
HPS1-208ENST00000467246 SOGA1O94964 1423 aa18.22■□□□□ 0.51
HPS1-208ENST00000467246 WRNQ14191 1432 aaPredicted RBP eCLIP18.2■□□□□ 0.5
HPS1-208ENST00000467246 NCAPD3P42695 1498 aa18.16■□□□□ 0.5
HPS1-208ENST00000467246 RUSC2Q8N2Y8 1516 aa18.15■□□□□ 0.5
HPS1-208ENST00000467246 SYNJ1O43426 1573 aa18.11■□□□□ 0.49
HPS1-208ENST00000467246 HMGXB3Q12766 1538 aa18.11■□□□□ 0.49
HPS1-208ENST00000467246 CSRNP3Q8WYN3 585 aa18.1■□□□□ 0.49
HPS1-208ENST00000467246 EEA1Q15075 1411 aa18.08■□□□□ 0.48
HPS1-208ENST00000467246 PPARGC1BQ86YN6 1023 aaKnown RBP18■□□□□ 0.47
HPS1-208ENST00000467246 TNIKQ9UKE5 1360 aa17.97■□□□□ 0.47
HPS1-208ENST00000467246 UBTFP17480 764 aaKnown RBP17.97■□□□□ 0.47
HPS1-208ENST00000467246 CEP162Q5TB80 1403 aa17.96■□□□□ 0.47
HPS1-208ENST00000467246 TOP2BQ02880 1626 aa17.92■□□□□ 0.46
HPS1-208ENST00000467246 GOLGA3Q08378 1498 aa17.92■□□□□ 0.46
HPS1-208ENST00000467246 CFTRP13569 1480 aa17.91■□□□□ 0.46
HPS1-208ENST00000467246 CEP164Q9UPV0 1460 aa17.86■□□□□ 0.45
HPS1-208ENST00000467246 BIVM-ERCC5R4GMW8 1640 aa17.86■□□□□ 0.45
HPS1-208ENST00000467246 CC2D2AQ9P2K1 1620 aa17.86■□□□□ 0.45
HPS1-208ENST00000467246 KIF21BO75037 1637 aa17.83■□□□□ 0.45
HPS1-208ENST00000467246 CUX1P39880 1505 aa17.83■□□□□ 0.45
HPS1-208ENST00000467246 RAPGEF2Q9Y4G8 1499 aa17.79■□□□□ 0.44
HPS1-208ENST00000467246 CADPSQ9ULU8 1353 aa17.77■□□□□ 0.44
HPS1-208ENST00000467246 TTBK1Q5TCY1 1321 aaPredicted RBP17.77■□□□□ 0.44
HPS1-208ENST00000467246 CLIP1P30622 1438 aa17.71■□□□□ 0.43
HPS1-208ENST00000467246 PRDM2Q13029 1718 aa17.7■□□□□ 0.42
HPS1-208ENST00000467246 RANGAP1P46060 587 aaPredicted RBP17.68■□□□□ 0.42
HPS1-208ENST00000467246 PRXQ9BXM0 1461 aa17.67■□□□□ 0.42
HPS1-208ENST00000467246 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
HPS1-208ENST00000467246 ZEB1P37275 1124 aaPredicted RBP17.65■□□□□ 0.42
HPS1-208ENST00000467246 ERICH3Q5RHP9 1530 aa17.62■□□□□ 0.41
HPS1-208ENST00000467246 FANCD2Q9BXW9 1451 aa17.59■□□□□ 0.41
HPS1-208ENST00000467246 VPS8Q8N3P4 1428 aa17.59■□□□□ 0.41
HPS1-208ENST00000467246 NESP48681 1621 aa17.57■□□□□ 0.4
HPS1-208ENST00000467246 CUX2O14529 1486 aa17.57■□□□□ 0.4
HPS1-208ENST00000467246 FGD5Q6ZNL6 1462 aa17.57■□□□□ 0.4
HPS1-208ENST00000467246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.56■□□□□ 0.4
HPS1-208ENST00000467246 IGF1RP08069 1367 aa17.52■□□□□ 0.4
HPS1-208ENST00000467246 DNAJC5BQ9UF47 199 aa17.52■□□□□ 0.4
HPS1-208ENST00000467246 APLP2Q06481 763 aa17.48■□□□□ 0.39
HPS1-208ENST00000467246 CCER1Q8TC90 406 aaPredicted RBP17.48■□□□□ 0.39
HPS1-208ENST00000467246 ARAP1Q96P48 1450 aa17.47■□□□□ 0.39
HPS1-208ENST00000467246 DNMBPQ6XZF7 1577 aa17.44■□□□□ 0.38
HPS1-208ENST00000467246 TOPBP1Q92547 1522 aa17.44■□□□□ 0.38
HPS1-208ENST00000467246 RAD54L2Q9Y4B4 1467 aa17.43■□□□□ 0.38
HPS1-208ENST00000467246 CARMIL1Q5VZK9 1371 aa17.43■□□□□ 0.38
HPS1-208ENST00000467246 POLA1P09884 1462 aaPredicted RBP17.41■□□□□ 0.38
HPS1-208ENST00000467246 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
HPS1-208ENST00000467246 ARHGAP35Q9NRY4 1499 aa17.38■□□□□ 0.37
HPS1-208ENST00000467246 ABCA10Q8WWZ4 1543 aa17.36■□□□□ 0.37
HPS1-208ENST00000467246 URB2Q14146 1524 aaKnown RBP17.36■□□□□ 0.37
HPS1-208ENST00000467246 HNRNPUL2Q1KMD3 747 aaKnown RBP17.35■□□□□ 0.37
HPS1-208ENST00000467246 KANK4Q5T7N3 995 aaPredicted RBP17.34■□□□□ 0.37
HPS1-208ENST00000467246 PDS5BQ9NTI5 1447 aa17.32■□□□□ 0.36
HPS1-208ENST00000467246 TDRD9Q8NDG6 1382 aaKnown RBP17.25■□□□□ 0.35
HPS1-208ENST00000467246 KIF21AQ7Z4S6 1674 aa17.24■□□□□ 0.35
HPS1-208ENST00000467246 P3H3Q8IVL6 736 aa17.22■□□□□ 0.35
HPS1-208ENST00000467246 WDR97A6NE52 1622 aa17.21■□□□□ 0.35
HPS1-208ENST00000467246 CUL7Q14999 1698 aa17.19■□□□□ 0.34
HPS1-208ENST00000467246 GAPVD1Q14C86 1478 aa17.17■□□□□ 0.34
HPS1-208ENST00000467246 ABCA5Q8WWZ7 1642 aa17.16■□□□□ 0.34
HPS1-208ENST00000467246 FHOD3Q2V2M9 1422 aa17.13■□□□□ 0.33
HPS1-208ENST00000467246 RRBP1Q9P2E9 1410 aaKnown RBP17.13■□□□□ 0.33
HPS1-208ENST00000467246 TIAM1Q13009 1591 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms