RNA–Protein interactions for RNA: ENST00000578469.1

SREBF1-218, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 588 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-218ENST00000578469 NISCHQ9Y2I1 1504 aa38.05■■■■□ 3.68
SREBF1-218ENST00000578469 ABCC9O60706 1549 aa34.6■■■■□ 3.13
SREBF1-218ENST00000578469 CCDC180Q9P1Z9 1646 aa34.35■■■■□ 3.09
SREBF1-218ENST00000578469 RB1CC1Q8TDY2 1594 aa32.87■■■□□ 2.85
SREBF1-218ENST00000578469 DNAJC5BQ9UF47 199 aa32.6■■■□□ 2.81
SREBF1-218ENST00000578469 NACADO15069 1562 aa32.54■■■□□ 2.8
SREBF1-218ENST00000578469 DCAF8L2P0C7V8 631 aa32.24■■■□□ 2.75
SREBF1-218ENST00000578469 PABPN1Q86U42 306 aaKnown RBP eCLIP32.1■■■□□ 2.73
SREBF1-218ENST00000578469 UNC13AQ9UPW8 1703 aa32.03■■■□□ 2.72
SREBF1-218ENST00000578469 MYO15BQ96JP2 1530 aa31.98■■■□□ 2.71
SREBF1-218ENST00000578469 ZCCHC6Q5VYS8 1495 aaKnown RBP31.96■■■□□ 2.71
SREBF1-218ENST00000578469 BICRAQ9NZM4 1560 aa31.81■■■□□ 2.68
SREBF1-218ENST00000578469 SHROOM4Q9ULL8 1493 aa31.51■■■□□ 2.63
SREBF1-218ENST00000578469 DCAF1Q9Y4B6 1507 aa31.49■■■□□ 2.63
SREBF1-218ENST00000578469 SCRIBQ14160 1630 aa31.24■■■□□ 2.59
SREBF1-218ENST00000578469 CC2D2AQ9P2K1 1620 aa31.24■■■□□ 2.59
SREBF1-218ENST00000578469 CECR2Q9BXF3 1484 aa31.23■■■□□ 2.59
SREBF1-218ENST00000578469 EIF4G1Q04637 1599 aaKnown RBP31.11■■■□□ 2.57
SREBF1-218ENST00000578469 DNAJC5Q9H3Z4 198 aa30.28■■■□□ 2.44
SREBF1-218ENST00000578469 CUX2O14529 1486 aa30.04■■■□□ 2.4
SREBF1-218ENST00000578469 NCAPD3P42695 1498 aa29.99■■■□□ 2.39
SREBF1-218ENST00000578469 ERCC6Q03468 1493 aa29.99■■■□□ 2.39
SREBF1-218ENST00000578469 SUPT5HO00267 1087 aaKnown RBP29.95■■■□□ 2.39
SREBF1-218ENST00000578469 ATAD2BQ9ULI0 1458 aa29.85■■■□□ 2.37
SREBF1-218ENST00000578469 SMARCA2P51531 1590 aa29.83■■■□□ 2.37
SREBF1-218ENST00000578469 HMGXB3Q12766 1538 aa29.81■■■□□ 2.36
SREBF1-218ENST00000578469 SMARCA4P51532 1647 aa29.77■■■□□ 2.36
SREBF1-218ENST00000578469 BAZ1BQ9UIG0 1483 aaKnown RBP29.61■■■□□ 2.33
SREBF1-218ENST00000578469 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
SREBF1-218ENST00000578469 NESP48681 1621 aa29.59■■■□□ 2.33
SREBF1-218ENST00000578469 RSF1Q96T23 1441 aaPredicted RBP29.52■■■□□ 2.32
SREBF1-218ENST00000578469 PEG3Q9GZU2 1588 aa29.47■■■□□ 2.31
SREBF1-218ENST00000578469 LAMC3Q9Y6N6 1575 aa29.43■■■□□ 2.3
SREBF1-218ENST00000578469 THOC2Q8NI27 1593 aaKnown RBP29.42■■■□□ 2.3
SREBF1-218ENST00000578469 MROH2BQ7Z745 1585 aa29.36■■■□□ 2.29
SREBF1-218ENST00000578469 PDS5BQ9NTI5 1447 aa29.28■■■□□ 2.28
SREBF1-218ENST00000578469 KIF21AQ7Z4S6 1674 aa29.25■■■□□ 2.27
SREBF1-218ENST00000578469 WIZO95785 1651 aa29.11■■■□□ 2.25
SREBF1-218ENST00000578469 CADPSQ9ULU8 1353 aa29.08■■■□□ 2.25
SREBF1-218ENST00000578469 MRC2Q9UBG0 1479 aa29.04■■■□□ 2.24
SREBF1-218ENST00000578469 WDR62O43379 1518 aa28.96■■■□□ 2.23
SREBF1-218ENST00000578469 CEP164Q9UPV0 1460 aa28.87■■■□□ 2.21
SREBF1-218ENST00000578469 TOP2AP11388 1531 aaKnown RBP28.87■■■□□ 2.21
SREBF1-218ENST00000578469 TRIM41Q8WV44 630 aa28.86■■■□□ 2.21
SREBF1-218ENST00000578469 FANCD2Q9BXW9 1451 aa28.77■■■□□ 2.2
SREBF1-218ENST00000578469 CFTRP13569 1480 aa28.68■■■□□ 2.18
SREBF1-218ENST00000578469 CHIC1Q5VXU3 224 aa28.68■■■□□ 2.18
SREBF1-218ENST00000578469 CCDC88BA6NC98 1476 aa28.56■■■□□ 2.16
SREBF1-218ENST00000578469 OSCARQ8IYS5 282 aa28.55■■■□□ 2.16
SREBF1-218ENST00000578469 URB2Q14146 1524 aaKnown RBP28.51■■■□□ 2.15
SREBF1-218ENST00000578469 PRDM2Q13029 1718 aa28.42■■■□□ 2.14
SREBF1-218ENST00000578469 IFT140Q96RY7 1462 aa28.29■■■□□ 2.12
SREBF1-218ENST00000578469 RIMBP3CA6NJZ7 1639 aa28.21■■■□□ 2.11
SREBF1-218ENST00000578469 RIMBP3BA6NNM3 1639 aa28.21■■■□□ 2.11
SREBF1-218ENST00000578469 RIMBP3Q9UFD9 1639 aa28.21■■■□□ 2.11
SREBF1-218ENST00000578469 ZNF608Q9ULD9 1512 aaPredicted RBP28.19■■■□□ 2.1
SREBF1-218ENST00000578469 TOPBP1Q92547 1522 aa28.18■■■□□ 2.1
SREBF1-218ENST00000578469 ABCC8Q09428 1581 aa28.16■■■□□ 2.1
SREBF1-218ENST00000578469 ARHGEF11O15085 1522 aa28.11■■■□□ 2.09
SREBF1-218ENST00000578469 EIF4G3O43432 1585 aaKnown RBP28.1■■■□□ 2.09
SREBF1-218ENST00000578469 DNMBPQ6XZF7 1577 aa28.07■■■□□ 2.08
SREBF1-218ENST00000578469 TARBP1Q13395 1621 aaKnown RBP27.93■■■□□ 2.06
SREBF1-218ENST00000578469 CHD1O14646 1710 aa27.93■■■□□ 2.06
SREBF1-218ENST00000578469 AQRO60306 1485 aaKnown RBP eCLIP27.9■■■□□ 2.063e-8■■■□□ 17
SREBF1-218ENST00000578469 CYB5RLQ6IPT4 315 aa27.88■■■□□ 2.05
SREBF1-218ENST00000578469 POLA1P09884 1462 aaPredicted RBP27.86■■■□□ 2.05
SREBF1-218ENST00000578469 FBLN2P98095 1184 aa27.84■■■□□ 2.05
SREBF1-218ENST00000578469 WRNQ14191 1432 aaPredicted RBP eCLIP27.83■■■□□ 2.05
SREBF1-218ENST00000578469 ARAP1Q96P48 1450 aa27.79■■■□□ 2.04
SREBF1-218ENST00000578469 TRHP20396 242 aaPredicted RBP27.74■■■□□ 2.03
SREBF1-218ENST00000578469 WDR97A6NE52 1622 aa27.73■■■□□ 2.03
SREBF1-218ENST00000578469 SOGA1O94964 1423 aa27.73■■■□□ 2.03
SREBF1-218ENST00000578469 RAD54L2Q9Y4B4 1467 aa27.72■■■□□ 2.03
SREBF1-218ENST00000578469 TDRD9Q8NDG6 1382 aaKnown RBP27.69■■■□□ 2.02
SREBF1-218ENST00000578469 SNAPC4Q5SXM2 1469 aa27.67■■■□□ 2.02
SREBF1-218ENST00000578469 FGD5Q6ZNL6 1462 aa27.64■■■□□ 2.02
SREBF1-218ENST00000578469 SYNJ1O43426 1573 aa27.64■■■□□ 2.01
SREBF1-218ENST00000578469 FAM9AQ8IZU1 332 aaPredicted RBP27.63■■■□□ 2.01
SREBF1-218ENST00000578469 MAGI1Q96QZ7 1491 aaPredicted RBP27.62■■■□□ 2.01
SREBF1-218ENST00000578469 CLASP1Q7Z460 1538 aa27.6■■■□□ 2.01
SREBF1-218ENST00000578469 CHMP7Q8WUX9 453 aaPredicted RBP27.59■■■□□ 2.01
SREBF1-218ENST00000578469 GRIN2BQ13224 1484 aa27.57■■■□□ 2
SREBF1-218ENST00000578469 TOP2BQ02880 1626 aa27.56■■■□□ 2
SREBF1-218ENST00000578469 LOC105371045A0A1W2PR82 267 aa27.55■■■□□ 2
SREBF1-218ENST00000578469 CUX1P39880 1505 aa27.54■■■□□ 2
SREBF1-218ENST00000578469 EEA1Q15075 1411 aa27.53■■■□□ 2
SREBF1-218ENST00000578469 BIVM-ERCC5R4GMW8 1640 aa27.52■■■□□ 2
SREBF1-218ENST00000578469 SYNJ2O15056 1496 aa27.51■■■□□ 2
SREBF1-218ENST00000578469 PBRM1Q86U86 1689 aa27.43■■□□□ 1.98
SREBF1-218ENST00000578469 GAPVD1Q14C86 1478 aa27.4■■□□□ 1.98
SREBF1-218ENST00000578469 CSRNP3Q8WYN3 585 aa27.34■■□□□ 1.97
SREBF1-218ENST00000578469 ABCA10Q8WWZ4 1543 aa27.33■■□□□ 1.97
SREBF1-218ENST00000578469 ABCA5Q8WWZ7 1642 aa27.31■■□□□ 1.96
SREBF1-218ENST00000578469 RUSC2Q8N2Y8 1516 aa27.31■■□□□ 1.96
SREBF1-218ENST00000578469 AEBP2Q6ZN18 517 aaPredicted RBP27.22■■□□□ 1.95
SREBF1-218ENST00000578469 EHMT2Q96KQ7 1210 aa27.2■■□□□ 1.94
SREBF1-218ENST00000578469 GRIN2AQ12879 1464 aa27.19■■□□□ 1.94
SREBF1-218ENST00000578469 KIF27Q86VH2 1401 aa27.16■■□□□ 1.94
SREBF1-218ENST00000578469 ADAMTS12P58397 1594 aa27.15■■□□□ 1.94
SREBF1-218ENST00000578469 GOLGA3Q08378 1498 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms