RNA–Protein interactions for RNA: ENST00000583475.1

VAPA-206, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 939 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-206ENST00000583475 AEBP2Q6ZN18 517 aaPredicted RBP21.2■□□□□ 0.98
VAPA-206ENST00000583475 CHIC1Q5VXU3 224 aa20.6■□□□□ 0.89
VAPA-206ENST00000583475 PHF23Q9BUL5 403 aaPredicted RBP18.15■□□□□ 0.5
VAPA-206ENST00000583475 SENP3Q9H4L4 574 aaPredicted RBP17.94■□□□□ 0.46
VAPA-206ENST00000583475 FOXD1Q16676 465 aa16.7■□□□□ 0.26
VAPA-206ENST00000583475 PLPPR3Q6T4P5 718 aa16.67■□□□□ 0.26
VAPA-206ENST00000583475 PPP6R1Q9UPN7 881 aa16.05■□□□□ 0.16
VAPA-206ENST00000583475 ADRA2BP18089 450 aa16.01■□□□□ 0.15
VAPA-206ENST00000583475 PIAS4Q8N2W9 510 aaPredicted RBP15.68■□□□□ 0.1
VAPA-206ENST00000583475 MSH5O43196 834 aa15.47■□□□□ 0.07
VAPA-206ENST00000583475 PPP4R3CPQ6ZMV5 832 aa14.7□□□□□ -0.06
VAPA-206ENST00000583475 POTEDQ86YR6 584 aa14.7□□□□□ -0.06
VAPA-206ENST00000583475 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
VAPA-206ENST00000583475 MAPK8IP2Q13387 824 aaPredicted RBP14.56□□□□□ -0.08
VAPA-206ENST00000583475 DMRT2Q9Y5R5 561 aa14.32□□□□□ -0.12
VAPA-206ENST00000583475 CNKSR2Q8WXI2 1034 aa14.29□□□□□ -0.12
VAPA-206ENST00000583475 KCNA4P22459 653 aa14.28□□□□□ -0.12
VAPA-206ENST00000583475 NCBP3Q53F19 620 aaKnown RBP14.26□□□□□ -0.13
VAPA-206ENST00000583475 NPM3O75607 178 aaKnown RBP14.08□□□□□ -0.16
VAPA-206ENST00000583475 RNF216Q9NWF9 866 aaPredicted RBP14.03□□□□□ -0.16
VAPA-206ENST00000583475 HOXD11P31277 338 aaPredicted RBP14.02□□□□□ -0.17
VAPA-206ENST00000583475 DNAJC5BQ9UF47 199 aa13.7□□□□□ -0.22
VAPA-206ENST00000583475 DCAF8L1A6NGE4 600 aa13.67□□□□□ -0.22
VAPA-206ENST00000583475 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
VAPA-206ENST00000583475 SLC4A2P04920 1241 aa13.35□□□□□ -0.27
VAPA-206ENST00000583475 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.32□□□□□ -0.28
VAPA-206ENST00000583475 RNF39Q9H2S5 420 aa13.22□□□□□ -0.29
VAPA-206ENST00000583475 ZBTB22O15209 634 aa13.16□□□□□ -0.3
VAPA-206ENST00000583475 FOXD4L1Q9NU39 408 aa13.14□□□□□ -0.31
VAPA-206ENST00000583475 CACNB1Q02641 598 aaPredicted RBP13.12□□□□□ -0.31
VAPA-206ENST00000583475 U3KPZ7 1027 aaPredicted RBP13.12□□□□□ -0.31
VAPA-206ENST00000583475 EHMT2Q96KQ7 1210 aa13.07□□□□□ -0.32
VAPA-206ENST00000583475 C1QBPQ07021 282 aaKnown RBP13.05□□□□□ -0.32
VAPA-206ENST00000583475 CSRNP3Q8WYN3 585 aa13.03□□□□□ -0.32
VAPA-206ENST00000583475 MYCNP04198 464 aaPredicted RBP12.98□□□□□ -0.33
VAPA-206ENST00000583475 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.88□□□□□ -0.35
VAPA-206ENST00000583475 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
VAPA-206ENST00000583475 SAMD1Q6SPF0 538 aaPredicted RBP12.85□□□□□ -0.35
VAPA-206ENST00000583475 SPINK5Q9NQ38 1064 aaPredicted RBP12.79□□□□□ -0.36
VAPA-206ENST00000583475 APLP2Q06481 763 aa12.74□□□□□ -0.37
VAPA-206ENST00000583475 CAPN15O75808 1086 aa12.7□□□□□ -0.38
VAPA-206ENST00000583475 ATF5Q9Y2D1 282 aaPredicted RBP12.7□□□□□ -0.38
VAPA-206ENST00000583475 ATXN8OSP0DMR3 200 aa12.69□□□□□ -0.38
VAPA-206ENST00000583475 TRHP20396 242 aaPredicted RBP12.63□□□□□ -0.39
VAPA-206ENST00000583475 ZNF219Q9P2Y4 722 aaPredicted RBP12.61□□□□□ -0.39
VAPA-206ENST00000583475 DSG3P32926 999 aa12.55□□□□□ -0.4
VAPA-206ENST00000583475 ABCB7O75027 752 aa12.46□□□□□ -0.41
VAPA-206ENST00000583475 POLA2Q14181 598 aa12.43□□□□□ -0.42
VAPA-206ENST00000583475 ZBTB12Q9Y330 459 aaPredicted RBP12.16□□□□□ -0.46
VAPA-206ENST00000583475 MKRN4PQ13434 485 aaPredicted RBP12.14□□□□□ -0.47
VAPA-206ENST00000583475 FBLN2P98095 1184 aa12.1□□□□□ -0.47
VAPA-206ENST00000583475 OSCARQ8IYS5 282 aa11.99□□□□□ -0.49
VAPA-206ENST00000583475 RBM42Q9BTD8 480 aaKnown RBP11.9□□□□□ -0.5
VAPA-206ENST00000583475 SPDYE2BA6NHP3 402 aa11.87□□□□□ -0.51
VAPA-206ENST00000583475 SPDYE6P0CI01 402 aa11.87□□□□□ -0.51
VAPA-206ENST00000583475 SPDYE2Q495Y8 402 aa11.87□□□□□ -0.51
VAPA-206ENST00000583475 ZNF692Q9BU19 519 aaPredicted RBP11.82□□□□□ -0.52
VAPA-206ENST00000583475 SPDYE4A6NLX3 237 aa11.79□□□□□ -0.52
VAPA-206ENST00000583475 SSUH2Q9Y2M2 353 aa11.78□□□□□ -0.52
VAPA-206ENST00000583475 AKT1S1Q96B36 256 aa11.77□□□□□ -0.53
VAPA-206ENST00000583475 FKBP8Q14318 412 aa11.74□□□□□ -0.53
VAPA-206ENST00000583475 REM2Q8IYK8 340 aaPredicted RBP11.68□□□□□ -0.54
VAPA-206ENST00000583475 PABPN1Q86U42 306 aaKnown RBP eCLIP11.66□□□□□ -0.54
VAPA-206ENST00000583475 PROM2Q8N271 834 aa11.62□□□□□ -0.55
VAPA-206ENST00000583475 POTEHQ6S545 545 aa11.57□□□□□ -0.56
VAPA-206ENST00000583475 PITPNM1O00562 1244 aa11.53□□□□□ -0.56
VAPA-206ENST00000583475 SPDYE1Q8NFV5 336 aaPredicted RBP11.53□□□□□ -0.56
VAPA-206ENST00000583475 CHRDL2Q6WN34 429 aa11.52□□□□□ -0.57
VAPA-206ENST00000583475 CLEC11AQ9Y240 323 aa11.48□□□□□ -0.57
VAPA-206ENST00000583475 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
VAPA-206ENST00000583475 PRR29P0C7W0 189 aa11.38□□□□□ -0.59
VAPA-206ENST00000583475 FXR2P51116 673 aaKnown RBP eCLIP11.35□□□□□ -0.59
VAPA-206ENST00000583475 PIP4P2Q8N4L2 257 aa11.32□□□□□ -0.6
VAPA-206ENST00000583475 FBXO3Q9UK99 471 aa11.31□□□□□ -0.6
VAPA-206ENST00000583475 CHADLQ6NUI6 762 aa11.24□□□□□ -0.61
VAPA-206ENST00000583475 CREBZFQ9NS37 354 aa11.24□□□□□ -0.61
VAPA-206ENST00000583475 PRKAR2AP13861 404 aaKnown RBP11.23□□□□□ -0.61
VAPA-206ENST00000583475 MIER1Q8N108 512 aa11.19□□□□□ -0.62
VAPA-206ENST00000583475 VASPP50552 380 aaPredicted RBP11.18□□□□□ -0.62
VAPA-206ENST00000583475 PLCD3Q8N3E9 789 aa11.14□□□□□ -0.63
VAPA-206ENST00000583475 MNX1P50219 401 aaPredicted RBP11.13□□□□□ -0.63
VAPA-206ENST00000583475 FARP1Q9Y4F1 1045 aaPredicted RBP11.12□□□□□ -0.63
VAPA-206ENST00000583475 PLEKHG5O94827 1062 aa11.08□□□□□ -0.64
VAPA-206ENST00000583475 IFNLR1Q8IU57 520 aaPredicted RBP11.06□□□□□ -0.64
VAPA-206ENST00000583475 HAX1O00165 279 aa11.02□□□□□ -0.65
VAPA-206ENST00000583475 NPM1P06748 294 aaKnown RBP eCLIP11.01□□□□□ -0.65
VAPA-206ENST00000583475 ZBTB47Q9UFB7 747 aaPredicted RBP11.01□□□□□ -0.65
VAPA-206ENST00000583475 KLHL34Q8N239 644 aa11□□□□□ -0.65
VAPA-206ENST00000583475 C19orf67A6NJJ6 358 aa10.96□□□□□ -0.65
VAPA-206ENST00000583475 NUBP1P53384 320 aa10.95□□□□□ -0.66
VAPA-206ENST00000583475 SP7Q8TDD2 431 aaPredicted RBP10.95□□□□□ -0.66
VAPA-206ENST00000583475 EVX2Q03828 476 aa10.93□□□□□ -0.66
VAPA-206ENST00000583475 SPOCK2Q92563 424 aa10.91□□□□□ -0.66
VAPA-206ENST00000583475 CD44P16070 742 aaKnown RBP10.9□□□□□ -0.66
VAPA-206ENST00000583475 RASEFQ8IZ41 740 aa10.9□□□□□ -0.66
VAPA-206ENST00000583475 TSPYL2Q9H2G4 693 aaPredicted RBP10.85□□□□□ -0.67
VAPA-206ENST00000583475 ZRANB1Q9UGI0 708 aa10.83□□□□□ -0.68
VAPA-206ENST00000583475 PAK3O75914 559 aaPredicted RBP10.81□□□□□ -0.68
VAPA-206ENST00000583475 DCAF8Q5TAQ9 597 aa10.81□□□□□ -0.68
VAPA-206ENST00000583475 FAM212AQ96EL1 285 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms