RNA–Protein interactions for RNA: ENST00000492602.5

SEC13-219, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 3

Gene SEC13, Length 393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-219	ENST00000492602	NISCH	Q9Y2I1	1504 aa		14.17	□□□□□ -0.14
SEC13-219	ENST00000492602	ABCC9	O60706	1549 aa		13.72	□□□□□ -0.21
SEC13-219	ENST00000492602	DNAJC5B	Q9UF47	199 aa		13.49	□□□□□ -0.25
SEC13-219	ENST00000492602	CCDC180	Q9P1Z9	1646 aa		12.94	□□□□□ -0.34
SEC13-219	ENST00000492602	DNAJC5	Q9H3Z4	198 aa		12.88	□□□□□ -0.35
SEC13-219	ENST00000492602	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.72	□□□□□ -0.37
SEC13-219	ENST00000492602	RB1CC1	Q8TDY2	1594 aa		12.7	□□□□□ -0.38
SEC13-219	ENST00000492602	NACAD	O15069	1562 aa		12.44	□□□□□ -0.42
SEC13-219	ENST00000492602	CECR2	Q9BXF3	1484 aa		12.42	□□□□□ -0.42
SEC13-219	ENST00000492602	DCAF8L2	P0C7V8	631 aa		12.41	□□□□□ -0.42
SEC13-219	ENST00000492602	UNC13A	Q9UPW8	1703 aa		12.35	□□□□□ -0.43
SEC13-219	ENST00000492602	BICRA	Q9NZM4	1560 aa		12.35	□□□□□ -0.43
SEC13-219	ENST00000492602	CC2D2A	Q9P2K1	1620 aa		12.31	□□□□□ -0.44
SEC13-219	ENST00000492602	EIF4G1	Q04637	1599 aa	Known RBP	12.12	□□□□□ -0.47
SEC13-219	ENST00000492602	TRIM41	Q8WV44	630 aa		12.09	□□□□□ -0.47
SEC13-219	ENST00000492602	SHROOM4	Q9ULL8	1493 aa		12.08	□□□□□ -0.47
SEC13-219	ENST00000492602	CUX2	O14529	1486 aa		12.06	□□□□□ -0.48
SEC13-219	ENST00000492602	MYO15B	Q96JP2	1530 aa		12.01	□□□□□ -0.49
SEC13-219	ENST00000492602	ERCC6	Q03468	1493 aa		11.9	□□□□□ -0.5
SEC13-219	ENST00000492602	SCRIB	Q14160	1630 aa		11.84	□□□□□ -0.51
SEC13-219	ENST00000492602	DCAF1	Q9Y4B6	1507 aa		11.62	□□□□□ -0.55
SEC13-219	ENST00000492602	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.59	□□□□□ -0.55
SEC13-219	ENST00000492602	NES	P48681	1621 aa		11.58	□□□□□ -0.56
SEC13-219	ENST00000492602	AEBP2	Q6ZN18	517 aa	Predicted RBP	11.56	□□□□□ -0.56
SEC13-219	ENST00000492602	THOC2	Q8NI27	1593 aa	Known RBP	11.54	□□□□□ -0.56
SEC13-219	ENST00000492602	NCAPD3	P42695	1498 aa		11.52	□□□□□ -0.56
SEC13-219	ENST00000492602	OSCAR	Q8IYS5	282 aa		11.47	□□□□□ -0.57
SEC13-219	ENST00000492602	SMARCA2	P51531	1590 aa		11.46	□□□□□ -0.57
SEC13-219	ENST00000492602	ATAD2B	Q9ULI0	1458 aa		11.4	□□□□□ -0.58
SEC13-219	ENST00000492602	TRH	P20396	242 aa	Predicted RBP	11.39	□□□□□ -0.59
SEC13-219	ENST00000492602	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.39	□□□□□ -0.59
SEC13-219	ENST00000492602	PDS5B	Q9NTI5	1447 aa		11.35	□□□□□ -0.59
SEC13-219	ENST00000492602	KIF21A	Q7Z4S6	1674 aa		11.35	□□□□□ -0.59
SEC13-219	ENST00000492602	LAMC3	Q9Y6N6	1575 aa		11.34	□□□□□ -0.59
SEC13-219	ENST00000492602	HMGXB3	Q12766	1538 aa		11.34	□□□□□ -0.59
SEC13-219	ENST00000492602	RIMBP3C	A6NJZ7	1639 aa		11.31	□□□□□ -0.6
SEC13-219	ENST00000492602	RIMBP3B	A6NNM3	1639 aa		11.31	□□□□□ -0.6
SEC13-219	ENST00000492602	RIMBP3	Q9UFD9	1639 aa		11.31	□□□□□ -0.6
SEC13-219	ENST00000492602	MRC2	Q9UBG0	1479 aa		11.27	□□□□□ -0.6
SEC13-219	ENST00000492602	CYB5RL	Q6IPT4	315 aa		11.27	□□□□□ -0.61
SEC13-219	ENST00000492602	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.25	□□□□□ -0.61
SEC13-219	ENST00000492602	WDR62	O43379	1518 aa		11.25	□□□□□ -0.61
SEC13-219	ENST00000492602	ARHGEF11	O15085	1522 aa		11.23	□□□□□ -0.61
SEC13-219	ENST00000492602	SMARCA4	P51532	1647 aa		11.18	□□□□□ -0.62
SEC13-219	ENST00000492602	CADPS	Q9ULU8	1353 aa		11.16	□□□□□ -0.62
SEC13-219	ENST00000492602	ILDR1	Q86SU0	546 aa	Predicted RBP	11.16	□□□□□ -0.62
SEC13-219	ENST00000492602	CEP164	Q9UPV0	1460 aa		11.1	□□□□□ -0.63
SEC13-219	ENST00000492602	ARAP1	Q96P48	1450 aa		11.07	□□□□□ -0.64
SEC13-219	ENST00000492602	PEG3	Q9GZU2	1588 aa		11.05	□□□□□ -0.64
SEC13-219	ENST00000492602	FANCD2	Q9BXW9	1451 aa		11.03	□□□□□ -0.64
SEC13-219	ENST00000492602	URB2	Q14146	1524 aa	Known RBP	10.97	□□□□□ -0.65
SEC13-219	ENST00000492602	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.97	□□□□□ -0.65
SEC13-219	ENST00000492602	RSF1	Q96T23	1441 aa	Predicted RBP	10.93	□□□□□ -0.66
SEC13-219	ENST00000492602	FBLN2	P98095	1184 aa		10.93	□□□□□ -0.66
SEC13-219	ENST00000492602	MROH2B	Q7Z745	1585 aa		10.93	□□□□□ -0.66
SEC13-219	ENST00000492602	IFT140	Q96RY7	1462 aa		10.9	□□□□□ -0.66
SEC13-219	ENST00000492602	CFTR	P13569	1480 aa		10.87	□□□□□ -0.67
SEC13-219	ENST00000492602	CHD1	O14646	1710 aa		10.86	□□□□□ -0.67
SEC13-219	ENST00000492602	EIF4G3	O43432	1585 aa	Known RBP	10.82	□□□□□ -0.68
SEC13-219	ENST00000492602	AQR	O60306	1485 aa	Known RBP eCLIP	10.8	□□□□□ -0.68	1e-7	■■■■□ 25.1
SEC13-219	ENST00000492602	KDM4F	A0A1W2PPD8	638 aa		10.78	□□□□□ -0.68
SEC13-219	ENST00000492602	WIZ	O95785	1651 aa		10.76	□□□□□ -0.69
SEC13-219	ENST00000492602	CLASP1	Q7Z460	1538 aa		10.73	□□□□□ -0.69
SEC13-219	ENST00000492602	TOPBP1	Q92547	1522 aa		10.73	□□□□□ -0.69
SEC13-219	ENST00000492602	GAPVD1	Q14C86	1478 aa		10.72	□□□□□ -0.69
SEC13-219	ENST00000492602	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.71	□□□□□ -0.69
SEC13-219	ENST00000492602	SYNJ1	O43426	1573 aa		10.68	□□□□□ -0.7
SEC13-219	ENST00000492602	TARBP1	Q13395	1621 aa	Known RBP	10.66	□□□□□ -0.7
SEC13-219	ENST00000492602	ABCC8	Q09428	1581 aa		10.65	□□□□□ -0.7
SEC13-219	ENST00000492602	SNAPC4	Q5SXM2	1469 aa		10.65	□□□□□ -0.7
SEC13-219	ENST00000492602	TDRD9	Q8NDG6	1382 aa	Known RBP	10.65	□□□□□ -0.71
SEC13-219	ENST00000492602	FBXO41	Q8TF61	875 aa		10.62	□□□□□ -0.71
SEC13-219	ENST00000492602	DNMBP	Q6XZF7	1577 aa		10.61	□□□□□ -0.71
SEC13-219	ENST00000492602	PRDM2	Q13029	1718 aa		10.61	□□□□□ -0.71
SEC13-219	ENST00000492602	KIF13A	Q9H1H9	1805 aa		10.59	□□□□□ -0.71
SEC13-219	ENST00000492602	FAM69C	Q0P6D2	419 aa		10.59	□□□□□ -0.71
SEC13-219	ENST00000492602	POLA1	P09884	1462 aa	Predicted RBP	10.59	□□□□□ -0.71
SEC13-219	ENST00000492602	RAD54L2	Q9Y4B4	1467 aa		10.59	□□□□□ -0.71
SEC13-219	ENST00000492602	ERCC6L2	Q5T890	1561 aa		10.58	□□□□□ -0.72
SEC13-219	ENST00000492602	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.56	□□□□□ -0.72
SEC13-219	ENST00000492602	TOP2A	P11388	1531 aa	Known RBP	10.56	□□□□□ -0.72
SEC13-219	ENST00000492602	SOGA1	O94964	1423 aa		10.56	□□□□□ -0.72
SEC13-219	ENST00000492602	HECW2	Q9P2P5	1572 aa		10.56	□□□□□ -0.72
SEC13-219	ENST00000492602	SYNJ2	O15056	1496 aa		10.55	□□□□□ -0.72
SEC13-219	ENST00000492602	LMTK3	Q96Q04	1460 aa		10.55	□□□□□ -0.72
SEC13-219	ENST00000492602	KDM6B	O15054	1643 aa		10.53	□□□□□ -0.72
SEC13-219	ENST00000492602	GRIN2B	Q13224	1484 aa		10.51	□□□□□ -0.73
SEC13-219	ENST00000492602	ADGRL1	O94910	1474 aa		10.49	□□□□□ -0.73
SEC13-219	ENST00000492602	ABCC10	Q5T3U5	1492 aa		10.49	□□□□□ -0.73
SEC13-219	ENST00000492602	SOCS7	O14512	581 aa		10.49	□□□□□ -0.73
SEC13-219	ENST00000492602	CCDC88B	A6NC98	1476 aa		10.48	□□□□□ -0.73
SEC13-219	ENST00000492602	WDR97	A6NE52	1622 aa		10.47	□□□□□ -0.73
SEC13-219	ENST00000492602	NPM1	P06748	294 aa	Known RBP eCLIP	10.47	□□□□□ -0.73
SEC13-219	ENST00000492602	CEP170	Q5SW79	1584 aa		10.45	□□□□□ -0.74
SEC13-219	ENST00000492602	ILDR2	Q71H61	639 aa		10.45	□□□□□ -0.74
SEC13-219	ENST00000492602	DIP2B	Q9P265	1576 aa		10.43	□□□□□ -0.74
SEC13-219	ENST00000492602	FGD5	Q6ZNL6	1462 aa		10.42	□□□□□ -0.74
SEC13-219	ENST00000492602	TSPOAP1	O95153	1857 aa		10.4	□□□□□ -0.75
SEC13-219	ENST00000492602	DISP3	Q9P2K9	1392 aa		10.39	□□□□□ -0.75
SEC13-219	ENST00000492602	MAPKBP1	O60336	1514 aa		10.38	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms