RNA–Protein interactions for RNA: ENST00000492602.5

SEC13-219, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 3

Gene SEC13, Length 393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-219ENST00000492602 NISCHQ9Y2I1 1504 aa14.17□□□□□ -0.14
SEC13-219ENST00000492602 ABCC9O60706 1549 aa13.72□□□□□ -0.21
SEC13-219ENST00000492602 DNAJC5BQ9UF47 199 aa13.49□□□□□ -0.25
SEC13-219ENST00000492602 CCDC180Q9P1Z9 1646 aa12.94□□□□□ -0.34
SEC13-219ENST00000492602 DNAJC5Q9H3Z4 198 aa12.88□□□□□ -0.35
SEC13-219ENST00000492602 PABPN1Q86U42 306 aaKnown RBP eCLIP12.72□□□□□ -0.37
SEC13-219ENST00000492602 RB1CC1Q8TDY2 1594 aa12.7□□□□□ -0.38
SEC13-219ENST00000492602 NACADO15069 1562 aa12.44□□□□□ -0.42
SEC13-219ENST00000492602 CECR2Q9BXF3 1484 aa12.42□□□□□ -0.42
SEC13-219ENST00000492602 DCAF8L2P0C7V8 631 aa12.41□□□□□ -0.42
SEC13-219ENST00000492602 UNC13AQ9UPW8 1703 aa12.35□□□□□ -0.43
SEC13-219ENST00000492602 BICRAQ9NZM4 1560 aa12.35□□□□□ -0.43
SEC13-219ENST00000492602 CC2D2AQ9P2K1 1620 aa12.31□□□□□ -0.44
SEC13-219ENST00000492602 EIF4G1Q04637 1599 aaKnown RBP12.12□□□□□ -0.47
SEC13-219ENST00000492602 TRIM41Q8WV44 630 aa12.09□□□□□ -0.47
SEC13-219ENST00000492602 SHROOM4Q9ULL8 1493 aa12.08□□□□□ -0.47
SEC13-219ENST00000492602 CUX2O14529 1486 aa12.06□□□□□ -0.48
SEC13-219ENST00000492602 MYO15BQ96JP2 1530 aa12.01□□□□□ -0.49
SEC13-219ENST00000492602 ERCC6Q03468 1493 aa11.9□□□□□ -0.5
SEC13-219ENST00000492602 SCRIBQ14160 1630 aa11.84□□□□□ -0.51
SEC13-219ENST00000492602 DCAF1Q9Y4B6 1507 aa11.62□□□□□ -0.55
SEC13-219ENST00000492602 ZCCHC6Q5VYS8 1495 aaKnown RBP11.59□□□□□ -0.55
SEC13-219ENST00000492602 NESP48681 1621 aa11.58□□□□□ -0.56
SEC13-219ENST00000492602 AEBP2Q6ZN18 517 aaPredicted RBP11.56□□□□□ -0.56
SEC13-219ENST00000492602 THOC2Q8NI27 1593 aaKnown RBP11.54□□□□□ -0.56
SEC13-219ENST00000492602 NCAPD3P42695 1498 aa11.52□□□□□ -0.56
SEC13-219ENST00000492602 OSCARQ8IYS5 282 aa11.47□□□□□ -0.57
SEC13-219ENST00000492602 SMARCA2P51531 1590 aa11.46□□□□□ -0.57
SEC13-219ENST00000492602 ATAD2BQ9ULI0 1458 aa11.4□□□□□ -0.58
SEC13-219ENST00000492602 TRHP20396 242 aaPredicted RBP11.39□□□□□ -0.59
SEC13-219ENST00000492602 BAZ1AQ9NRL2 1556 aaPredicted RBP11.39□□□□□ -0.59
SEC13-219ENST00000492602 PDS5BQ9NTI5 1447 aa11.35□□□□□ -0.59
SEC13-219ENST00000492602 KIF21AQ7Z4S6 1674 aa11.35□□□□□ -0.59
SEC13-219ENST00000492602 LAMC3Q9Y6N6 1575 aa11.34□□□□□ -0.59
SEC13-219ENST00000492602 HMGXB3Q12766 1538 aa11.34□□□□□ -0.59
SEC13-219ENST00000492602 RIMBP3CA6NJZ7 1639 aa11.31□□□□□ -0.6
SEC13-219ENST00000492602 RIMBP3BA6NNM3 1639 aa11.31□□□□□ -0.6
SEC13-219ENST00000492602 RIMBP3Q9UFD9 1639 aa11.31□□□□□ -0.6
SEC13-219ENST00000492602 MRC2Q9UBG0 1479 aa11.27□□□□□ -0.6
SEC13-219ENST00000492602 CYB5RLQ6IPT4 315 aa11.27□□□□□ -0.61
SEC13-219ENST00000492602 BAZ1BQ9UIG0 1483 aaKnown RBP11.25□□□□□ -0.61
SEC13-219ENST00000492602 WDR62O43379 1518 aa11.25□□□□□ -0.61
SEC13-219ENST00000492602 ARHGEF11O15085 1522 aa11.23□□□□□ -0.61
SEC13-219ENST00000492602 SMARCA4P51532 1647 aa11.18□□□□□ -0.62
SEC13-219ENST00000492602 CADPSQ9ULU8 1353 aa11.16□□□□□ -0.62
SEC13-219ENST00000492602 ILDR1Q86SU0 546 aaPredicted RBP11.16□□□□□ -0.62
SEC13-219ENST00000492602 CEP164Q9UPV0 1460 aa11.1□□□□□ -0.63
SEC13-219ENST00000492602 ARAP1Q96P48 1450 aa11.07□□□□□ -0.64
SEC13-219ENST00000492602 PEG3Q9GZU2 1588 aa11.05□□□□□ -0.64
SEC13-219ENST00000492602 FANCD2Q9BXW9 1451 aa11.03□□□□□ -0.64
SEC13-219ENST00000492602 URB2Q14146 1524 aaKnown RBP10.97□□□□□ -0.65
SEC13-219ENST00000492602 ZNF608Q9ULD9 1512 aaPredicted RBP10.97□□□□□ -0.65
SEC13-219ENST00000492602 RSF1Q96T23 1441 aaPredicted RBP10.93□□□□□ -0.66
SEC13-219ENST00000492602 FBLN2P98095 1184 aa10.93□□□□□ -0.66
SEC13-219ENST00000492602 MROH2BQ7Z745 1585 aa10.93□□□□□ -0.66
SEC13-219ENST00000492602 IFT140Q96RY7 1462 aa10.9□□□□□ -0.66
SEC13-219ENST00000492602 CFTRP13569 1480 aa10.87□□□□□ -0.67
SEC13-219ENST00000492602 CHD1O14646 1710 aa10.86□□□□□ -0.67
SEC13-219ENST00000492602 EIF4G3O43432 1585 aaKnown RBP10.82□□□□□ -0.68
SEC13-219ENST00000492602 AQRO60306 1485 aaKnown RBP eCLIP10.8□□□□□ -0.681e-7■■■■□ 25.1
SEC13-219ENST00000492602 KDM4FA0A1W2PPD8 638 aa10.78□□□□□ -0.68
SEC13-219ENST00000492602 WIZO95785 1651 aa10.76□□□□□ -0.69
SEC13-219ENST00000492602 CLASP1Q7Z460 1538 aa10.73□□□□□ -0.69
SEC13-219ENST00000492602 TOPBP1Q92547 1522 aa10.73□□□□□ -0.69
SEC13-219ENST00000492602 GAPVD1Q14C86 1478 aa10.72□□□□□ -0.69
SEC13-219ENST00000492602 CHMP7Q8WUX9 453 aaPredicted RBP10.71□□□□□ -0.69
SEC13-219ENST00000492602 SYNJ1O43426 1573 aa10.68□□□□□ -0.7
SEC13-219ENST00000492602 TARBP1Q13395 1621 aaKnown RBP10.66□□□□□ -0.7
SEC13-219ENST00000492602 ABCC8Q09428 1581 aa10.65□□□□□ -0.7
SEC13-219ENST00000492602 SNAPC4Q5SXM2 1469 aa10.65□□□□□ -0.7
SEC13-219ENST00000492602 TDRD9Q8NDG6 1382 aaKnown RBP10.65□□□□□ -0.71
SEC13-219ENST00000492602 FBXO41Q8TF61 875 aa10.62□□□□□ -0.71
SEC13-219ENST00000492602 DNMBPQ6XZF7 1577 aa10.61□□□□□ -0.71
SEC13-219ENST00000492602 PRDM2Q13029 1718 aa10.61□□□□□ -0.71
SEC13-219ENST00000492602 KIF13AQ9H1H9 1805 aa10.59□□□□□ -0.71
SEC13-219ENST00000492602 FAM69CQ0P6D2 419 aa10.59□□□□□ -0.71
SEC13-219ENST00000492602 POLA1P09884 1462 aaPredicted RBP10.59□□□□□ -0.71
SEC13-219ENST00000492602 RAD54L2Q9Y4B4 1467 aa10.59□□□□□ -0.71
SEC13-219ENST00000492602 ERCC6L2Q5T890 1561 aa10.58□□□□□ -0.72
SEC13-219ENST00000492602 MAGI1Q96QZ7 1491 aaPredicted RBP10.56□□□□□ -0.72
SEC13-219ENST00000492602 TOP2AP11388 1531 aaKnown RBP10.56□□□□□ -0.72
SEC13-219ENST00000492602 SOGA1O94964 1423 aa10.56□□□□□ -0.72
SEC13-219ENST00000492602 HECW2Q9P2P5 1572 aa10.56□□□□□ -0.72
SEC13-219ENST00000492602 SYNJ2O15056 1496 aa10.55□□□□□ -0.72
SEC13-219ENST00000492602 LMTK3Q96Q04 1460 aa10.55□□□□□ -0.72
SEC13-219ENST00000492602 KDM6BO15054 1643 aa10.53□□□□□ -0.72
SEC13-219ENST00000492602 GRIN2BQ13224 1484 aa10.51□□□□□ -0.73
SEC13-219ENST00000492602 ADGRL1O94910 1474 aa10.49□□□□□ -0.73
SEC13-219ENST00000492602 ABCC10Q5T3U5 1492 aa10.49□□□□□ -0.73
SEC13-219ENST00000492602 SOCS7O14512 581 aa10.49□□□□□ -0.73
SEC13-219ENST00000492602 CCDC88BA6NC98 1476 aa10.48□□□□□ -0.73
SEC13-219ENST00000492602 WDR97A6NE52 1622 aa10.47□□□□□ -0.73
SEC13-219ENST00000492602 NPM1P06748 294 aaKnown RBP eCLIP10.47□□□□□ -0.73
SEC13-219ENST00000492602 CEP170Q5SW79 1584 aa10.45□□□□□ -0.74
SEC13-219ENST00000492602 ILDR2Q71H61 639 aa10.45□□□□□ -0.74
SEC13-219ENST00000492602 DIP2BQ9P265 1576 aa10.43□□□□□ -0.74
SEC13-219ENST00000492602 FGD5Q6ZNL6 1462 aa10.42□□□□□ -0.74
SEC13-219ENST00000492602 TSPOAP1O95153 1857 aa10.4□□□□□ -0.75
SEC13-219ENST00000492602 DISP3Q9P2K9 1392 aa10.39□□□□□ -0.75
SEC13-219ENST00000492602 MAPKBP1O60336 1514 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms