RNA–Protein interactions for RNA: ENST00000563672.5

CMTM3-206, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 4

Gene CMTM3, Length 460 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-206ENST00000563672 NISCHQ9Y2I1 1504 aa49.4■■■■■ 5.5
CMTM3-206ENST00000563672 CCDC180Q9P1Z9 1646 aa43.86■■■■■ 4.61
CMTM3-206ENST00000563672 ABCC9O60706 1549 aa43.03■■■■■ 4.48
CMTM3-206ENST00000563672 RB1CC1Q8TDY2 1594 aa41.34■■■■■ 4.21
CMTM3-206ENST00000563672 NACADO15069 1562 aa41.31■■■■■ 4.2
CMTM3-206ENST00000563672 DCAF8L2P0C7V8 631 aa41.29■■■■■ 4.2
CMTM3-206ENST00000563672 ZCCHC6Q5VYS8 1495 aaKnown RBP41.13■■■■■ 4.17
CMTM3-206ENST00000563672 MYO15BQ96JP2 1530 aa41.08■■■■■ 4.17
CMTM3-206ENST00000563672 DCAF1Q9Y4B6 1507 aa40.88■■■■■ 4.14
CMTM3-206ENST00000563672 UNC13AQ9UPW8 1703 aa40.33■■■■■ 4.05
CMTM3-206ENST00000563672 PABPN1Q86U42 306 aaKnown RBP eCLIP40.25■■■■■ 4.03
CMTM3-206ENST00000563672 BICRAQ9NZM4 1560 aa40.14■■■■■ 4.02
CMTM3-206ENST00000563672 SCRIBQ14160 1630 aa40.02■■■■■ 4
CMTM3-206ENST00000563672 SHROOM4Q9ULL8 1493 aa39.7■■■■□ 3.95
CMTM3-206ENST00000563672 DNAJC5BQ9UF47 199 aa39.65■■■■□ 3.94
CMTM3-206ENST00000563672 EIF4G1Q04637 1599 aaKnown RBP39.06■■■■□ 3.84
CMTM3-206ENST00000563672 CC2D2AQ9P2K1 1620 aa38.89■■■■□ 3.82
CMTM3-206ENST00000563672 CECR2Q9BXF3 1484 aa38.68■■■■□ 3.78
CMTM3-206ENST00000563672 SMARCA4P51532 1647 aa38.3■■■■□ 3.72
CMTM3-206ENST00000563672 BAZ1AQ9NRL2 1556 aaPredicted RBP38.26■■■■□ 3.72
CMTM3-206ENST00000563672 NCAPD3P42695 1498 aa38.17■■■■□ 3.7
CMTM3-206ENST00000563672 ATAD2BQ9ULI0 1458 aa38.16■■■■□ 3.7
CMTM3-206ENST00000563672 SMARCA2P51531 1590 aa38.07■■■■□ 3.69
CMTM3-206ENST00000563672 MROH2BQ7Z745 1585 aa38.07■■■■□ 3.69
CMTM3-206ENST00000563672 PEG3Q9GZU2 1588 aa37.96■■■■□ 3.67
CMTM3-206ENST00000563672 HMGXB3Q12766 1538 aa37.92■■■■□ 3.66
CMTM3-206ENST00000563672 BAZ1BQ9UIG0 1483 aaKnown RBP37.81■■■■□ 3.64
CMTM3-206ENST00000563672 RSF1Q96T23 1441 aaPredicted RBP37.65■■■■□ 3.62
CMTM3-206ENST00000563672 WIZO95785 1651 aa37.6■■■■□ 3.61
CMTM3-206ENST00000563672 NESP48681 1621 aa37.23■■■■□ 3.55
CMTM3-206ENST00000563672 TOP2AP11388 1531 aaKnown RBP37.22■■■■□ 3.55
CMTM3-206ENST00000563672 LAMC3Q9Y6N6 1575 aa37.1■■■■□ 3.53
CMTM3-206ENST00000563672 ERCC6Q03468 1493 aa37.07■■■■□ 3.53
CMTM3-206ENST00000563672 CADPSQ9ULU8 1353 aa37.05■■■■□ 3.52
CMTM3-206ENST00000563672 PDS5BQ9NTI5 1447 aa36.9■■■■□ 3.5
CMTM3-206ENST00000563672 CCDC88BA6NC98 1476 aa36.83■■■■□ 3.49
CMTM3-206ENST00000563672 CFTRP13569 1480 aa36.82■■■■□ 3.48
CMTM3-206ENST00000563672 CUX2O14529 1486 aa36.73■■■■□ 3.47
CMTM3-206ENST00000563672 KIF21AQ7Z4S6 1674 aa36.7■■■■□ 3.47
CMTM3-206ENST00000563672 THOC2Q8NI27 1593 aaKnown RBP36.63■■■■□ 3.45
CMTM3-206ENST00000563672 SUPT5HO00267 1087 aaKnown RBP36.63■■■■□ 3.45
CMTM3-206ENST00000563672 FANCD2Q9BXW9 1451 aa36.59■■■■□ 3.45
CMTM3-206ENST00000563672 CEP164Q9UPV0 1460 aa36.53■■■■□ 3.44
CMTM3-206ENST00000563672 MRC2Q9UBG0 1479 aa36.5■■■■□ 3.43
CMTM3-206ENST00000563672 WDR62O43379 1518 aa36.38■■■■□ 3.41
CMTM3-206ENST00000563672 PRDM2Q13029 1718 aa36.36■■■■□ 3.41
CMTM3-206ENST00000563672 URB2Q14146 1524 aaKnown RBP36.24■■■■□ 3.39
CMTM3-206ENST00000563672 TOPBP1Q92547 1522 aa35.99■■■■□ 3.35
CMTM3-206ENST00000563672 ABCC8Q09428 1581 aa35.99■■■■□ 3.35
CMTM3-206ENST00000563672 DNMBPQ6XZF7 1577 aa35.93■■■■□ 3.34
CMTM3-206ENST00000563672 IFT140Q96RY7 1462 aa35.8■■■■□ 3.32
CMTM3-206ENST00000563672 DNAJC5Q9H3Z4 198 aa35.75■■■■□ 3.31
CMTM3-206ENST00000563672 CUX1P39880 1505 aa35.71■■■■□ 3.31
CMTM3-206ENST00000563672 POLA1P09884 1462 aaPredicted RBP35.7■■■■□ 3.31
CMTM3-206ENST00000563672 ZNF608Q9ULD9 1512 aaPredicted RBP35.64■■■■□ 3.3
CMTM3-206ENST00000563672 TARBP1Q13395 1621 aaKnown RBP35.59■■■■□ 3.29
CMTM3-206ENST00000563672 FGD5Q6ZNL6 1462 aa35.59■■■■□ 3.29
CMTM3-206ENST00000563672 SOGA1O94964 1423 aa35.57■■■■□ 3.28
CMTM3-206ENST00000563672 RAD54L2Q9Y4B4 1467 aa35.54■■■■□ 3.28
CMTM3-206ENST00000563672 WRNQ14191 1432 aaPredicted RBP eCLIP35.47■■■■□ 3.27
CMTM3-206ENST00000563672 AQRO60306 1485 aaKnown RBP eCLIP35.44■■■■□ 3.26
CMTM3-206ENST00000563672 EIF4G3O43432 1585 aaKnown RBP35.43■■■■□ 3.26
CMTM3-206ENST00000563672 TDRD9Q8NDG6 1382 aaKnown RBP35.38■■■■□ 3.26
CMTM3-206ENST00000563672 TOP2BQ02880 1626 aa35.36■■■■□ 3.25
CMTM3-206ENST00000563672 SYNJ1O43426 1573 aa35.34■■■■□ 3.25
CMTM3-206ENST00000563672 BIVM-ERCC5R4GMW8 1640 aa35.33■■■■□ 3.25
CMTM3-206ENST00000563672 WDR97A6NE52 1622 aa35.29■■■■□ 3.24
CMTM3-206ENST00000563672 ABCA10Q8WWZ4 1543 aa35.26■■■■□ 3.23
CMTM3-206ENST00000563672 OSCARQ8IYS5 282 aa35.25■■■■□ 3.23
CMTM3-206ENST00000563672 GRIN2BQ13224 1484 aa35.14■■■■□ 3.22
CMTM3-206ENST00000563672 GAPVD1Q14C86 1478 aa35.14■■■■□ 3.22
CMTM3-206ENST00000563672 SNAPC4Q5SXM2 1469 aa35.09■■■■□ 3.21
CMTM3-206ENST00000563672 ABCA5Q8WWZ7 1642 aa35.07■■■■□ 3.21
CMTM3-206ENST00000563672 MAGI1Q96QZ7 1491 aaPredicted RBP35.04■■■■□ 3.2
CMTM3-206ENST00000563672 FBLN2P98095 1184 aa35.01■■■■□ 3.2
CMTM3-206ENST00000563672 PBRM1Q86U86 1689 aa34.95■■■■□ 3.19
CMTM3-206ENST00000563672 CHD1O14646 1710 aa34.95■■■■□ 3.19
CMTM3-206ENST00000563672 CHMP7Q8WUX9 453 aaPredicted RBP34.94■■■■□ 3.18
CMTM3-206ENST00000563672 SYNJ2O15056 1496 aa34.92■■■■□ 3.18
CMTM3-206ENST00000563672 ERICH3Q5RHP9 1530 aa34.82■■■■□ 3.16
CMTM3-206ENST00000563672 FHAD1B1AJZ9 1412 aa34.74■■■■□ 3.15
CMTM3-206ENST00000563672 ADAMTS12P58397 1594 aa34.74■■■■□ 3.15
CMTM3-206ENST00000563672 KIF27Q86VH2 1401 aa34.73■■■■□ 3.15
CMTM3-206ENST00000563672 GRIN2AQ12879 1464 aa34.68■■■■□ 3.14
CMTM3-206ENST00000563672 CLASP1Q7Z460 1538 aa34.66■■■■□ 3.14
CMTM3-206ENST00000563672 IGF1RP08069 1367 aa34.65■■■■□ 3.14
CMTM3-206ENST00000563672 ARHGEF11O15085 1522 aa34.62■■■■□ 3.13
CMTM3-206ENST00000563672 RIMBP3CA6NJZ7 1639 aa34.6■■■■□ 3.13
CMTM3-206ENST00000563672 RIMBP3BA6NNM3 1639 aa34.6■■■■□ 3.13
CMTM3-206ENST00000563672 RIMBP3Q9UFD9 1639 aa34.6■■■■□ 3.13
CMTM3-206ENST00000563672 TRIM41Q8WV44 630 aa34.6■■■■□ 3.13
CMTM3-206ENST00000563672 NUP160Q12769 1436 aa34.55■■■■□ 3.12
CMTM3-206ENST00000563672 CEP170Q5SW79 1584 aa34.49■■■■□ 3.11
CMTM3-206ENST00000563672 CUL7Q14999 1698 aa34.44■■■■□ 3.1
CMTM3-206ENST00000563672 RUSC2Q8N2Y8 1516 aa34.41■■■■□ 3.1
CMTM3-206ENST00000563672 CARMIL1Q5VZK9 1371 aa34.41■■■■□ 3.1
CMTM3-206ENST00000563672 ARAP1Q96P48 1450 aa34.35■■■■□ 3.09
CMTM3-206ENST00000563672 CYB5RLQ6IPT4 315 aa34.35■■■■□ 3.09
CMTM3-206ENST00000563672 SHROOM2Q13796 1616 aa34.25■■■■□ 3.07
CMTM3-206ENST00000563672 JPH4Q96JJ6 628 aa34.24■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms