RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 CHIC1Q5VXU3 224 aa19.15■□□□□ 0.66
CDC42BPA-211ENST00000466538 AEBP2Q6ZN18 517 aaPredicted RBP19.14■□□□□ 0.65
CDC42BPA-211ENST00000466538 PHF23Q9BUL5 403 aaPredicted RBP16.85■□□□□ 0.29
CDC42BPA-211ENST00000466538 SENP3Q9H4L4 574 aaPredicted RBP16.26■□□□□ 0.19
CDC42BPA-211ENST00000466538 PLPPR3Q6T4P5 718 aa15.76■□□□□ 0.11
CDC42BPA-211ENST00000466538 FOXD1Q16676 465 aa14.98□□□□□ -0.01
CDC42BPA-211ENST00000466538 ADRA2BP18089 450 aa14.73□□□□□ -0.05
CDC42BPA-211ENST00000466538 PPP6R1Q9UPN7 881 aa14.72□□□□□ -0.05
CDC42BPA-211ENST00000466538 PIAS4Q8N2W9 510 aaPredicted RBP14.22□□□□□ -0.13
CDC42BPA-211ENST00000466538 KCNA4P22459 653 aa13.99□□□□□ -0.17
CDC42BPA-211ENST00000466538 PPP4R3CPQ6ZMV5 832 aa13.9□□□□□ -0.18
CDC42BPA-211ENST00000466538 MSH5O43196 834 aa13.73□□□□□ -0.21
CDC42BPA-211ENST00000466538 NCBP3Q53F19 620 aaKnown RBP13.72□□□□□ -0.21
CDC42BPA-211ENST00000466538 SCAF1Q9H7N4 1312 aaKnown RBP13.6□□□□□ -0.23
CDC42BPA-211ENST00000466538 CNKSR2Q8WXI2 1034 aa13.47□□□□□ -0.25
CDC42BPA-211ENST00000466538 NPM3O75607 178 aaKnown RBP13.44□□□□□ -0.26
CDC42BPA-211ENST00000466538 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
CDC42BPA-211ENST00000466538 SLC4A1APQ9BWU0 796 aaKnown RBP13.43□□□□□ -0.26
CDC42BPA-211ENST00000466538 MAPK8IP2Q13387 824 aaPredicted RBP13.23□□□□□ -0.29
CDC42BPA-211ENST00000466538 CSRNP3Q8WYN3 585 aa13.16□□□□□ -0.3
CDC42BPA-211ENST00000466538 DNAJC5BQ9UF47 199 aa13.12□□□□□ -0.31
CDC42BPA-211ENST00000466538 RNF216Q9NWF9 866 aaPredicted RBP13.1□□□□□ -0.31
CDC42BPA-211ENST00000466538 DMRT2Q9Y5R5 561 aa13.03□□□□□ -0.32
CDC42BPA-211ENST00000466538 HOXD11P31277 338 aaPredicted RBP12.94□□□□□ -0.34
CDC42BPA-211ENST00000466538 ZBTB22O15209 634 aa12.85□□□□□ -0.35
CDC42BPA-211ENST00000466538 FOXD4L1Q9NU39 408 aa12.81□□□□□ -0.36
CDC42BPA-211ENST00000466538 SLC4A2P04920 1241 aa12.58□□□□□ -0.4
CDC42BPA-211ENST00000466538 MYCNP04198 464 aaPredicted RBP12.45□□□□□ -0.42
CDC42BPA-211ENST00000466538 ATXN8OSP0DMR3 200 aa12.41□□□□□ -0.42
CDC42BPA-211ENST00000466538 DCAF8L1A6NGE4 600 aa12.38□□□□□ -0.43
CDC42BPA-211ENST00000466538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.31□□□□□ -0.44
CDC42BPA-211ENST00000466538 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.22□□□□□ -0.45
CDC42BPA-211ENST00000466538 HNRNPUL2Q1KMD3 747 aaKnown RBP12.22□□□□□ -0.45
CDC42BPA-211ENST00000466538 SAMD1Q6SPF0 538 aaPredicted RBP12.16□□□□□ -0.46
CDC42BPA-211ENST00000466538 U3KPZ7 1027 aaPredicted RBP12.12□□□□□ -0.47
CDC42BPA-211ENST00000466538 APLP2Q06481 763 aa12□□□□□ -0.49
CDC42BPA-211ENST00000466538 ATF5Q9Y2D1 282 aaPredicted RBP12□□□□□ -0.49
CDC42BPA-211ENST00000466538 FKBP8Q14318 412 aa11.86□□□□□ -0.51
CDC42BPA-211ENST00000466538 ZNF219Q9P2Y4 722 aaPredicted RBP11.84□□□□□ -0.51
CDC42BPA-211ENST00000466538 RNF39Q9H2S5 420 aa11.77□□□□□ -0.53
CDC42BPA-211ENST00000466538 POTEDQ86YR6 584 aa11.72□□□□□ -0.53
CDC42BPA-211ENST00000466538 C1QBPQ07021 282 aaKnown RBP11.7□□□□□ -0.54
CDC42BPA-211ENST00000466538 TRHP20396 242 aaPredicted RBP11.64□□□□□ -0.55
CDC42BPA-211ENST00000466538 SPINK5Q9NQ38 1064 aaPredicted RBP11.63□□□□□ -0.55
CDC42BPA-211ENST00000466538 CAPN15O75808 1086 aa11.6□□□□□ -0.55
CDC42BPA-211ENST00000466538 AMER1Q5JTC6 1135 aaPredicted RBP11.58□□□□□ -0.56
CDC42BPA-211ENST00000466538 FBLN2P98095 1184 aa11.57□□□□□ -0.56
CDC42BPA-211ENST00000466538 POLA2Q14181 598 aa11.56□□□□□ -0.56
CDC42BPA-211ENST00000466538 MKRN4PQ13434 485 aaPredicted RBP11.52□□□□□ -0.57
CDC42BPA-211ENST00000466538 SPDYE4A6NLX3 237 aa11.5□□□□□ -0.57
CDC42BPA-211ENST00000466538 RTN4Q9NQC3 1192 aaKnown RBP11.47□□□□□ -0.57
CDC42BPA-211ENST00000466538 ZBTB12Q9Y330 459 aaPredicted RBP11.47□□□□□ -0.57
CDC42BPA-211ENST00000466538 FBXO3Q9UK99 471 aa11.43□□□□□ -0.58
CDC42BPA-211ENST00000466538 PROM2Q8N271 834 aa11.39□□□□□ -0.59
CDC42BPA-211ENST00000466538 ABCB7O75027 752 aa11.36□□□□□ -0.59
CDC42BPA-211ENST00000466538 DSG3P32926 999 aa11.34□□□□□ -0.59
CDC42BPA-211ENST00000466538 VASPP50552 380 aaPredicted RBP11.19□□□□□ -0.62
CDC42BPA-211ENST00000466538 SPDYE2BA6NHP3 402 aa11.18□□□□□ -0.62
CDC42BPA-211ENST00000466538 SPDYE6P0CI01 402 aa11.18□□□□□ -0.62
CDC42BPA-211ENST00000466538 SPDYE2Q495Y8 402 aa11.18□□□□□ -0.62
CDC42BPA-211ENST00000466538 ZNF692Q9BU19 519 aaPredicted RBP11.17□□□□□ -0.62
CDC42BPA-211ENST00000466538 CACNB1Q02641 598 aaPredicted RBP11.16□□□□□ -0.62
CDC42BPA-211ENST00000466538 OSCARQ8IYS5 282 aa11.1□□□□□ -0.63
CDC42BPA-211ENST00000466538 SSUH2Q9Y2M2 353 aa11.1□□□□□ -0.63
CDC42BPA-211ENST00000466538 STAG3Q9UJ98 1225 aa11.08□□□□□ -0.64
CDC42BPA-211ENST00000466538 SLC24A1O60721 1099 aa11.05□□□□□ -0.64
CDC42BPA-211ENST00000466538 IFNLR1Q8IU57 520 aaPredicted RBP11.05□□□□□ -0.64
CDC42BPA-211ENST00000466538 PABPN1Q86U42 306 aaKnown RBP eCLIP11.01□□□□□ -0.65
CDC42BPA-211ENST00000466538 KLHL34Q8N239 644 aa10.92□□□□□ -0.66
CDC42BPA-211ENST00000466538 PLCD3Q8N3E9 789 aa10.9□□□□□ -0.66
CDC42BPA-211ENST00000466538 SPOCK2Q92563 424 aa10.9□□□□□ -0.66
CDC42BPA-211ENST00000466538 MIER1Q8N108 512 aa10.88□□□□□ -0.67
CDC42BPA-211ENST00000466538 PLEKHG5O94827 1062 aa10.85□□□□□ -0.67
CDC42BPA-211ENST00000466538 PKD2Q13563 968 aa10.84□□□□□ -0.67
CDC42BPA-211ENST00000466538 RBM42Q9BTD8 480 aaKnown RBP10.84□□□□□ -0.67
CDC42BPA-211ENST00000466538 ZBTB47Q9UFB7 747 aaPredicted RBP10.82□□□□□ -0.68
CDC42BPA-211ENST00000466538 AKT1S1Q96B36 256 aa10.79□□□□□ -0.68
CDC42BPA-211ENST00000466538 SPDYE1Q8NFV5 336 aaPredicted RBP10.75□□□□□ -0.69
CDC42BPA-211ENST00000466538 ECM2O94769 699 aaPredicted RBP10.71□□□□□ -0.69
CDC42BPA-211ENST00000466538 DCAF8L2P0C7V8 631 aa10.7□□□□□ -0.7
CDC42BPA-211ENST00000466538 PLCB2Q00722 1185 aa10.67□□□□□ -0.7
CDC42BPA-211ENST00000466538 REM2Q8IYK8 340 aaPredicted RBP10.64□□□□□ -0.71
CDC42BPA-211ENST00000466538 TRIM41Q8WV44 630 aa10.64□□□□□ -0.71
CDC42BPA-211ENST00000466538 PRR29P0C7W0 189 aa10.63□□□□□ -0.71
CDC42BPA-211ENST00000466538 CIZ1Q9ULV3 898 aaPredicted RBP10.62□□□□□ -0.71
CDC42BPA-211ENST00000466538 CLEC11AQ9Y240 323 aa10.61□□□□□ -0.71
CDC42BPA-211ENST00000466538 GSE1Q14687 1217 aa10.59□□□□□ -0.71
CDC42BPA-211ENST00000466538 BBXQ8WY36 941 aaPredicted RBP10.57□□□□□ -0.72
CDC42BPA-211ENST00000466538 RGL2O15211 777 aa10.56□□□□□ -0.72
CDC42BPA-211ENST00000466538 CREBZFQ9NS37 354 aa10.55□□□□□ -0.72
CDC42BPA-211ENST00000466538 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.55□□□□□ -0.72
CDC42BPA-211ENST00000466538 NUBP1P53384 320 aa10.54□□□□□ -0.72
CDC42BPA-211ENST00000466538 NPM1P06748 294 aaKnown RBP eCLIP10.49□□□□□ -0.73
CDC42BPA-211ENST00000466538 MNX1P50219 401 aaPredicted RBP10.49□□□□□ -0.73
CDC42BPA-211ENST00000466538 PITPNM1O00562 1244 aa10.48□□□□□ -0.73
CDC42BPA-211ENST00000466538 DCAF8Q5TAQ9 597 aa10.48□□□□□ -0.73
CDC42BPA-211ENST00000466538 HAP1P54257 671 aaPredicted RBP10.47□□□□□ -0.73
CDC42BPA-211ENST00000466538 FAM212AQ96EL1 285 aa10.46□□□□□ -0.73
CDC42BPA-211ENST00000466538 TAOK2Q9UL54 1235 aa10.45□□□□□ -0.74
CDC42BPA-211ENST00000466538 CHRM1P11229 460 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms