RNA–Protein interactions for RNA: ENST00000355815.8

SREBF1-202, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SREBF1, Length 4,253 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-202ENST00000355815 NISCHQ9Y2I1 1504 aa26.06■■□□□ 1.76
SREBF1-202ENST00000355815 DCAF8L2P0C7V8 631 aa24.77■■□□□ 1.56
SREBF1-202ENST00000355815 SHROOM4Q9ULL8 1493 aa24.34■■□□□ 1.49
SREBF1-202ENST00000355815 SUPT5HO00267 1087 aaKnown RBP24.26■■□□□ 1.47
SREBF1-202ENST00000355815 EHMT2Q96KQ7 1210 aa23.17■■□□□ 1.3
SREBF1-202ENST00000355815 FAM9AQ8IZU1 332 aaPredicted RBP22.75■■□□□ 1.23
SREBF1-202ENST00000355815 PCGF6Q9BYE7 350 aa22.75■■□□□ 1.23
SREBF1-202ENST00000355815 CHIC1Q5VXU3 224 aa22.44■■□□□ 1.18
SREBF1-202ENST00000355815 LOC105371045A0A1W2PR82 267 aa22.41■■□□□ 1.18
SREBF1-202ENST00000355815 TTBK1Q5TCY1 1321 aaPredicted RBP22.31■■□□□ 1.16
SREBF1-202ENST00000355815 TRIM41Q8WV44 630 aa22.23■■□□□ 1.15
SREBF1-202ENST00000355815 PPARGC1BQ86YN6 1023 aaKnown RBP22.16■■□□□ 1.14
SREBF1-202ENST00000355815 PELP1Q8IZL8 1130 aaKnown RBP22.05■■□□□ 1.12
SREBF1-202ENST00000355815 HRCP23327 699 aa21.9■■□□□ 1.1
SREBF1-202ENST00000355815 RANGAP1P46060 587 aaPredicted RBP21.9■■□□□ 1.1
SREBF1-202ENST00000355815 ZCCHC6Q5VYS8 1495 aaKnown RBP21.76■■□□□ 1.07
SREBF1-202ENST00000355815 ABCC9O60706 1549 aa21.71■■□□□ 1.07
SREBF1-202ENST00000355815 TRIM26Q12899 539 aaPredicted RBP21.67■■□□□ 1.06
SREBF1-202ENST00000355815 CENPBP07199 599 aaPredicted RBP21.66■■□□□ 1.06
SREBF1-202ENST00000355815 YTHDC1Q96MU7 727 aaKnown RBP21.63■■□□□ 1.05
SREBF1-202ENST00000355815 UBTFP17480 764 aaKnown RBP21.6■■□□□ 1.05
SREBF1-202ENST00000355815 MYT1Q01538 1121 aa21.58■■□□□ 1.05
SREBF1-202ENST00000355815 CCER1Q8TC90 406 aaPredicted RBP21.57■■□□□ 1.04
SREBF1-202ENST00000355815 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
SREBF1-202ENST00000355815 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
SREBF1-202ENST00000355815 APLP2Q06481 763 aa21.43■■□□□ 1.02
SREBF1-202ENST00000355815 ZEB1P37275 1124 aaPredicted RBP21.39■■□□□ 1.02
SREBF1-202ENST00000355815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.34■■□□□ 1.01
SREBF1-202ENST00000355815 SCRIBQ14160 1630 aa21.26■□□□□ 0.99
SREBF1-202ENST00000355815 CCDC180Q9P1Z9 1646 aa21.23■□□□□ 0.99
SREBF1-202ENST00000355815 ERICH6Q7L0X2 663 aa21.2■□□□□ 0.98
SREBF1-202ENST00000355815 HNRNPUL2Q1KMD3 747 aaKnown RBP21.15■□□□□ 0.98
SREBF1-202ENST00000355815 ATP1B4Q9UN42 357 aaPredicted RBP21.12■□□□□ 0.97
SREBF1-202ENST00000355815 RSF1Q96T23 1441 aaPredicted RBP20.99■□□□□ 0.95
SREBF1-202ENST00000355815 ITGAEP38570 1179 aa20.99■□□□□ 0.95
SREBF1-202ENST00000355815 GTF3C3Q9Y5Q9 886 aa20.92■□□□□ 0.94
SREBF1-202ENST00000355815 DCAF1Q9Y4B6 1507 aa20.82■□□□□ 0.92
SREBF1-202ENST00000355815 CECR2Q9BXF3 1484 aa20.8■□□□□ 0.92
SREBF1-202ENST00000355815 CSRNP3Q8WYN3 585 aa20.76■□□□□ 0.91
SREBF1-202ENST00000355815 NEFLP07196 543 aa20.75■□□□□ 0.91
SREBF1-202ENST00000355815 DIEXFQ68CQ4 756 aaKnown RBP20.74■□□□□ 0.91
SREBF1-202ENST00000355815 RB1CC1Q8TDY2 1594 aa20.55■□□□□ 0.88
SREBF1-202ENST00000355815 SCAF1Q9H7N4 1312 aaKnown RBP20.55■□□□□ 0.88
SREBF1-202ENST00000355815 ACIN1Q9UKV3 1341 aaKnown RBP20.53■□□□□ 0.88
SREBF1-202ENST00000355815 BCANQ96GW7 911 aa20.52■□□□□ 0.88
SREBF1-202ENST00000355815 MROH2BQ7Z745 1585 aa20.47■□□□□ 0.87
SREBF1-202ENST00000355815 P3H3Q8IVL6 736 aa20.47■□□□□ 0.87
SREBF1-202ENST00000355815 FAM50AQ14320 339 aaKnown RBP20.38■□□□□ 0.85
SREBF1-202ENST00000355815 NEUROD1Q13562 356 aa20.37■□□□□ 0.85
SREBF1-202ENST00000355815 ZNF316A6NFI3 1004 aaPredicted RBP20.33■□□□□ 0.84
SREBF1-202ENST00000355815 SOGA1O94964 1423 aa20.31■□□□□ 0.84
SREBF1-202ENST00000355815 CNGB1Q14028 1251 aaPredicted RBP20.3■□□□□ 0.84
SREBF1-202ENST00000355815 NACADO15069 1562 aa20.3■□□□□ 0.84
SREBF1-202ENST00000355815 CEP162Q5TB80 1403 aa20.26■□□□□ 0.83
SREBF1-202ENST00000355815 ABCC8Q09428 1581 aa20.24■□□□□ 0.83
SREBF1-202ENST00000355815 ARID3CA6NKF2 412 aa20.22■□□□□ 0.83
SREBF1-202ENST00000355815 WIZO95785 1651 aa20.22■□□□□ 0.83
SREBF1-202ENST00000355815 CCDC88BA6NC98 1476 aa20.2■□□□□ 0.82
SREBF1-202ENST00000355815 WRNQ14191 1432 aaPredicted RBP eCLIP20.12■□□□□ 0.812e-6■■■■□ 26.3
SREBF1-202ENST00000355815 CLIP1P30622 1438 aa20.1■□□□□ 0.81
SREBF1-202ENST00000355815 BAZ1AQ9NRL2 1556 aaPredicted RBP20.1■□□□□ 0.81
SREBF1-202ENST00000355815 MIER1Q8N108 512 aa20.09■□□□□ 0.81
SREBF1-202ENST00000355815 POLR3GLQ9BT43 218 aa20.09■□□□□ 0.81
SREBF1-202ENST00000355815 RUSC2Q8N2Y8 1516 aa20.03■□□□□ 0.8
SREBF1-202ENST00000355815 TNIKQ9UKE5 1360 aa20.03■□□□□ 0.8
SREBF1-202ENST00000355815 RTL5Q5HYW3 569 aaPredicted RBP20.01■□□□□ 0.79
SREBF1-202ENST00000355815 HIRIP3Q9BW71 556 aaPredicted RBP20.01■□□□□ 0.79
SREBF1-202ENST00000355815 TRIM52Q96A61 297 aa19.96■□□□□ 0.79
SREBF1-202ENST00000355815 GOLGA3Q08378 1498 aa19.95■□□□□ 0.78
SREBF1-202ENST00000355815 BAZ1BQ9UIG0 1483 aaKnown RBP19.93■□□□□ 0.78
SREBF1-202ENST00000355815 DAXXQ9UER7 740 aaPredicted RBP19.92■□□□□ 0.78
SREBF1-202ENST00000355815 FBLN2P98095 1184 aa19.88■□□□□ 0.77
SREBF1-202ENST00000355815 DDX10Q13206 875 aaKnown RBP19.87■□□□□ 0.77
SREBF1-202ENST00000355815 KANK4Q5T7N3 995 aaPredicted RBP19.86■□□□□ 0.77
SREBF1-202ENST00000355815 EEA1Q15075 1411 aa19.83■□□□□ 0.77
SREBF1-202ENST00000355815 BCL11AQ9H165 835 aa19.81■□□□□ 0.76
SREBF1-202ENST00000355815 CHIC2Q9UKJ5 165 aa19.81■□□□□ 0.76
SREBF1-202ENST00000355815 ZNF326Q5BKZ1 582 aaKnown RBP19.79■□□□□ 0.76
SREBF1-202ENST00000355815 FKBP8Q14318 412 aa19.78■□□□□ 0.76
SREBF1-202ENST00000355815 CEP164Q9UPV0 1460 aa19.78■□□□□ 0.76
SREBF1-202ENST00000355815 EIF5BO60841 1220 aaKnown RBP19.76■□□□□ 0.75
SREBF1-202ENST00000355815 CDK11AQ9UQ88 783 aaPredicted RBP19.76■□□□□ 0.75
SREBF1-202ENST00000355815 TOP2AP11388 1531 aaKnown RBP19.73■□□□□ 0.75
SREBF1-202ENST00000355815 SIN3AQ96ST3 1273 aa19.73■□□□□ 0.75
SREBF1-202ENST00000355815 ANP32CO43423 234 aa19.67■□□□□ 0.74
SREBF1-202ENST00000355815 ZNF777Q9ULD5 760 aaPredicted RBP19.67■□□□□ 0.74
SREBF1-202ENST00000355815 SMARCA4P51532 1647 aa19.66■□□□□ 0.74
SREBF1-202ENST00000355815 RAPGEF2Q9Y4G8 1499 aa19.66■□□□□ 0.74
SREBF1-202ENST00000355815 KIF27Q86VH2 1401 aa19.63■□□□□ 0.73
SREBF1-202ENST00000355815 NBR1Q14596 966 aa19.62■□□□□ 0.73
SREBF1-202ENST00000355815 RRP7BPQ9NSQ0 103 aa19.61■□□□□ 0.73
SREBF1-202ENST00000355815 VPS8Q8N3P4 1428 aa19.6■□□□□ 0.73
SREBF1-202ENST00000355815 MYT1LQ9UL68 1186 aa19.59■□□□□ 0.73
SREBF1-202ENST00000355815 SMARCA2P51531 1590 aa19.58■□□□□ 0.73
SREBF1-202ENST00000355815 ATAD2BQ9ULI0 1458 aa19.58■□□□□ 0.72
SREBF1-202ENST00000355815 SENP3-EIF4A1A0A087X0R7 540 aa19.55■□□□□ 0.72
SREBF1-202ENST00000355815 NPM2Q86SE8 214 aaKnown RBP19.55■□□□□ 0.72
SREBF1-202ENST00000355815 ANP32EQ9BTT0 268 aa19.54■□□□□ 0.72
SREBF1-202ENST00000355815 CUX2O14529 1486 aa19.53■□□□□ 0.72
SREBF1-202ENST00000355815 TONSLQ96HA7 1378 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms