RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-223ENST00000543658 NISCHQ9Y2I1 1504 aa27.91■■■□□ 2.06
DDB1-223ENST00000543658 CCDC180Q9P1Z9 1646 aa24.74■■□□□ 1.55
DDB1-223ENST00000543658 ABCC9O60706 1549 aa23.65■■□□□ 1.38
DDB1-223ENST00000543658 ZCCHC6Q5VYS8 1495 aaKnown RBP23.36■■□□□ 1.33
DDB1-223ENST00000543658 DCAF8L2P0C7V8 631 aa23.16■■□□□ 1.3
DDB1-223ENST00000543658 DCAF1Q9Y4B6 1507 aa23.12■■□□□ 1.29
DDB1-223ENST00000543658 NACADO15069 1562 aa23.07■■□□□ 1.28
DDB1-223ENST00000543658 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
DDB1-223ENST00000543658 RB1CC1Q8TDY2 1594 aa23.03■■□□□ 1.28
DDB1-223ENST00000543658 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
DDB1-223ENST00000543658 UNC13AQ9UPW8 1703 aa22.57■■□□□ 1.2
DDB1-223ENST00000543658 SHROOM4Q9ULL8 1493 aa22.35■■□□□ 1.17
DDB1-223ENST00000543658 BICRAQ9NZM4 1560 aa22.21■■□□□ 1.15
DDB1-223ENST00000543658 PABPN1Q86U42 306 aaKnown RBP eCLIP22.12■■□□□ 1.13
DDB1-223ENST00000543658 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
DDB1-223ENST00000543658 EIF4G1Q04637 1599 aaKnown RBP21.65■■□□□ 1.06
DDB1-223ENST00000543658 CECR2Q9BXF3 1484 aa21.64■■□□□ 1.06
DDB1-223ENST00000543658 SMARCA4P51532 1647 aa21.62■■□□□ 1.05
DDB1-223ENST00000543658 MROH2BQ7Z745 1585 aa21.51■■□□□ 1.03
DDB1-223ENST00000543658 CC2D2AQ9P2K1 1620 aa21.46■■□□□ 1.03
DDB1-223ENST00000543658 RSF1Q96T23 1441 aaPredicted RBP21.39■■□□□ 1.02
DDB1-223ENST00000543658 SMARCA2P51531 1590 aa21.39■■□□□ 1.01
DDB1-223ENST00000543658 WIZO95785 1651 aa21.37■■□□□ 1.01
DDB1-223ENST00000543658 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
DDB1-223ENST00000543658 ATAD2BQ9ULI0 1458 aa21.3■■□□□ 1
DDB1-223ENST00000543658 SUPT5HO00267 1087 aaKnown RBP21.26■□□□□ 0.99
DDB1-223ENST00000543658 BAZ1BQ9UIG0 1483 aaKnown RBP21.23■□□□□ 0.99
DDB1-223ENST00000543658 HMGXB3Q12766 1538 aa21.23■□□□□ 0.99
DDB1-223ENST00000543658 NCAPD3P42695 1498 aa21.2■□□□□ 0.98
DDB1-223ENST00000543658 TOP2AP11388 1531 aaKnown RBP21.16■□□□□ 0.98
DDB1-223ENST00000543658 DNAJC5BQ9UF47 199 aa21.12■□□□□ 0.97
DDB1-223ENST00000543658 CCDC88BA6NC98 1476 aa20.84■□□□□ 0.93
DDB1-223ENST00000543658 PRDM2Q13029 1718 aa20.72■□□□□ 0.91
DDB1-223ENST00000543658 LAMC3Q9Y6N6 1575 aa20.68■□□□□ 0.9
DDB1-223ENST00000543658 CADPSQ9ULU8 1353 aa20.62■□□□□ 0.89
DDB1-223ENST00000543658 CFTRP13569 1480 aa20.6■□□□□ 0.89
DDB1-223ENST00000543658 NESP48681 1621 aa20.58■□□□□ 0.89
DDB1-223ENST00000543658 KIF21AQ7Z4S6 1674 aa20.48■□□□□ 0.87
DDB1-223ENST00000543658 PDS5BQ9NTI5 1447 aa20.48■□□□□ 0.87
DDB1-223ENST00000543658 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
DDB1-223ENST00000543658 ERCC6Q03468 1493 aa20.43■□□□□ 0.86
DDB1-223ENST00000543658 CEP164Q9UPV0 1460 aa20.41■□□□□ 0.86
DDB1-223ENST00000543658 ABCC8Q09428 1581 aa20.29■□□□□ 0.84
DDB1-223ENST00000543658 MRC2Q9UBG0 1479 aa20.25■□□□□ 0.83
DDB1-223ENST00000543658 THOC2Q8NI27 1593 aaKnown RBP20.24■□□□□ 0.83
DDB1-223ENST00000543658 DNMBPQ6XZF7 1577 aa20.22■□□□□ 0.83
DDB1-223ENST00000543658 WRNQ14191 1432 aaPredicted RBP eCLIP20.22■□□□□ 0.83
DDB1-223ENST00000543658 BIVM-ERCC5R4GMW8 1640 aa20.2■□□□□ 0.82
DDB1-223ENST00000543658 URB2Q14146 1524 aaKnown RBP20.17■□□□□ 0.82
DDB1-223ENST00000543658 AEBP2Q6ZN18 517 aaPredicted RBP20.17■□□□□ 0.82
DDB1-223ENST00000543658 WDR62O43379 1518 aa20.17■□□□□ 0.82
DDB1-223ENST00000543658 CUX1P39880 1505 aa20.17■□□□□ 0.82
DDB1-223ENST00000543658 SYNJ1O43426 1573 aa20.17■□□□□ 0.82
DDB1-223ENST00000543658 TOP2BQ02880 1626 aa20.16■□□□□ 0.82
DDB1-223ENST00000543658 TOPBP1Q92547 1522 aa20.16■□□□□ 0.82
DDB1-223ENST00000543658 TRIM41Q8WV44 630 aa20.06■□□□□ 0.8
DDB1-223ENST00000543658 FGD5Q6ZNL6 1462 aa20.05■□□□□ 0.8
DDB1-223ENST00000543658 CHIC1Q5VXU3 224 aa20.04■□□□□ 0.8
DDB1-223ENST00000543658 POLA1P09884 1462 aaPredicted RBP20■□□□□ 0.79
DDB1-223ENST00000543658 CUX2O14529 1486 aa19.99■□□□□ 0.79
DDB1-223ENST00000543658 IFT140Q96RY7 1462 aa19.93■□□□□ 0.78
DDB1-223ENST00000543658 WDR97A6NE52 1622 aa19.93■□□□□ 0.78
DDB1-223ENST00000543658 SOGA1O94964 1423 aa19.93■□□□□ 0.78
DDB1-223ENST00000543658 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
DDB1-223ENST00000543658 RAD54L2Q9Y4B4 1467 aa19.9■□□□□ 0.78
DDB1-223ENST00000543658 ABCA10Q8WWZ4 1543 aa19.86■□□□□ 0.77
DDB1-223ENST00000543658 EIF4G3O43432 1585 aaKnown RBP19.8■□□□□ 0.76
DDB1-223ENST00000543658 PBRM1Q86U86 1689 aa19.79■□□□□ 0.76
DDB1-223ENST00000543658 ABCA5Q8WWZ7 1642 aa19.79■□□□□ 0.76
DDB1-223ENST00000543658 KIF27Q86VH2 1401 aa19.77■□□□□ 0.76
DDB1-223ENST00000543658 ZNF608Q9ULD9 1512 aaPredicted RBP19.75■□□□□ 0.75
DDB1-223ENST00000543658 GAPVD1Q14C86 1478 aa19.73■□□□□ 0.75
DDB1-223ENST00000543658 EEA1Q15075 1411 aa19.73■□□□□ 0.75
DDB1-223ENST00000543658 TDRD9Q8NDG6 1382 aaKnown RBP19.72■□□□□ 0.75
DDB1-223ENST00000543658 AQRO60306 1485 aaKnown RBP eCLIP19.69■□□□□ 0.749e-7■■■□□ 18.2
DDB1-223ENST00000543658 GRIN2BQ13224 1484 aa19.67■□□□□ 0.74
DDB1-223ENST00000543658 ERICH3Q5RHP9 1530 aa19.66■□□□□ 0.74
DDB1-223ENST00000543658 RUSC2Q8N2Y8 1516 aa19.66■□□□□ 0.74
DDB1-223ENST00000543658 CUL7Q14999 1698 aa19.66■□□□□ 0.74
DDB1-223ENST00000543658 FAM9AQ8IZU1 332 aaPredicted RBP19.64■□□□□ 0.73
DDB1-223ENST00000543658 SNAPC4Q5SXM2 1469 aa19.59■□□□□ 0.73
DDB1-223ENST00000543658 MAGI1Q96QZ7 1491 aaPredicted RBP19.58■□□□□ 0.72
DDB1-223ENST00000543658 ADAMTS12P58397 1594 aa19.57■□□□□ 0.72
DDB1-223ENST00000543658 CSRNP3Q8WYN3 585 aa19.56■□□□□ 0.72
DDB1-223ENST00000543658 IGF1RP08069 1367 aa19.54■□□□□ 0.72
DDB1-223ENST00000543658 KIF21BO75037 1637 aa19.52■□□□□ 0.72
DDB1-223ENST00000543658 CHD1O14646 1710 aa19.52■□□□□ 0.72
DDB1-223ENST00000543658 FHAD1B1AJZ9 1412 aa19.51■□□□□ 0.71
DDB1-223ENST00000543658 CARMIL1Q5VZK9 1371 aa19.5■□□□□ 0.71
DDB1-223ENST00000543658 SYNJ2O15056 1496 aa19.48■□□□□ 0.71
DDB1-223ENST00000543658 RAPGEF2Q9Y4G8 1499 aa19.48■□□□□ 0.71
DDB1-223ENST00000543658 PRXQ9BXM0 1461 aa19.45■□□□□ 0.7
DDB1-223ENST00000543658 FBLN2P98095 1184 aa19.43■□□□□ 0.7
DDB1-223ENST00000543658 CHMP7Q8WUX9 453 aaPredicted RBP19.43■□□□□ 0.7
DDB1-223ENST00000543658 GOLGA3Q08378 1498 aa19.42■□□□□ 0.7
DDB1-223ENST00000543658 GRIN2AQ12879 1464 aa19.41■□□□□ 0.7
DDB1-223ENST00000543658 CTTNBP2Q8WZ74 1663 aa19.41■□□□□ 0.7
DDB1-223ENST00000543658 EHMT2Q96KQ7 1210 aa19.38■□□□□ 0.69
DDB1-223ENST00000543658 UBTFP17480 764 aaKnown RBP19.31■□□□□ 0.68
DDB1-223ENST00000543658 CEP170Q5SW79 1584 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 193.8 ms