RNA–Protein interactions for RNA: ENST00000472442.2

SCAMP4-207, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-207ENST00000472442 NISCHQ9Y2I1 1504 aa28.55■■■□□ 2.16
SCAMP4-207ENST00000472442 CCDC180Q9P1Z9 1646 aa24.61■■□□□ 1.53
SCAMP4-207ENST00000472442 ZCCHC6Q5VYS8 1495 aaKnown RBP24.05■■□□□ 1.44
SCAMP4-207ENST00000472442 SHROOM4Q9ULL8 1493 aa23.7■■□□□ 1.38
SCAMP4-207ENST00000472442 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.37
SCAMP4-207ENST00000472442 DCAF1Q9Y4B6 1507 aa23.52■■□□□ 1.36
SCAMP4-207ENST00000472442 ABCC9O60706 1549 aa23.13■■□□□ 1.29
SCAMP4-207ENST00000472442 MYO15BQ96JP2 1530 aa23.08■■□□□ 1.29
SCAMP4-207ENST00000472442 SUPT5HO00267 1087 aaKnown RBP22.96■■□□□ 1.27
SCAMP4-207ENST00000472442 NACADO15069 1562 aa22.87■■□□□ 1.25
SCAMP4-207ENST00000472442 SCRIBQ14160 1630 aa22.83■■□□□ 1.25
SCAMP4-207ENST00000472442 RB1CC1Q8TDY2 1594 aa22.59■■□□□ 1.21
SCAMP4-207ENST00000472442 RSF1Q96T23 1441 aaPredicted RBP22.34■■□□□ 1.17
SCAMP4-207ENST00000472442 CECR2Q9BXF3 1484 aa22.25■■□□□ 1.15
SCAMP4-207ENST00000472442 UNC13AQ9UPW8 1703 aa22.24■■□□□ 1.15
SCAMP4-207ENST00000472442 CHIC1Q5VXU3 224 aa22.15■■□□□ 1.14
SCAMP4-207ENST00000472442 MROH2BQ7Z745 1585 aa22.13■■□□□ 1.13
SCAMP4-207ENST00000472442 BICRAQ9NZM4 1560 aa22.01■■□□□ 1.11
SCAMP4-207ENST00000472442 HRCP23327 699 aa21.99■■□□□ 1.11
SCAMP4-207ENST00000472442 BAZ1AQ9NRL2 1556 aaPredicted RBP21.97■■□□□ 1.11
SCAMP4-207ENST00000472442 WIZO95785 1651 aa21.97■■□□□ 1.11
SCAMP4-207ENST00000472442 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
SCAMP4-207ENST00000472442 SMARCA4P51532 1647 aa21.86■■□□□ 1.09
SCAMP4-207ENST00000472442 TOP2AP11388 1531 aaKnown RBP21.67■■□□□ 1.06
SCAMP4-207ENST00000472442 PCGF6Q9BYE7 350 aa21.65■■□□□ 1.06
SCAMP4-207ENST00000472442 PPARGC1BQ86YN6 1023 aaKnown RBP21.56■■□□□ 1.04
SCAMP4-207ENST00000472442 PEG3Q9GZU2 1588 aa21.54■■□□□ 1.04
SCAMP4-207ENST00000472442 CCDC88BA6NC98 1476 aa21.52■■□□□ 1.04
SCAMP4-207ENST00000472442 SMARCA2P51531 1590 aa21.52■■□□□ 1.04
SCAMP4-207ENST00000472442 EIF4G1Q04637 1599 aaKnown RBP21.5■■□□□ 1.03
SCAMP4-207ENST00000472442 TRIM41Q8WV44 630 aa21.49■■□□□ 1.03
SCAMP4-207ENST00000472442 ATAD2BQ9ULI0 1458 aa21.43■■□□□ 1.02
SCAMP4-207ENST00000472442 LOC105371045A0A1W2PR82 267 aa21.4■■□□□ 1.02
SCAMP4-207ENST00000472442 BAZ1BQ9UIG0 1483 aaKnown RBP21.31■■□□□ 1
SCAMP4-207ENST00000472442 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
SCAMP4-207ENST00000472442 FAM9AQ8IZU1 332 aaPredicted RBP21.21■□□□□ 0.99
SCAMP4-207ENST00000472442 NCAPD3P42695 1498 aa21.16■□□□□ 0.98
SCAMP4-207ENST00000472442 HMGXB3Q12766 1538 aa21.12■□□□□ 0.97
SCAMP4-207ENST00000472442 TRIM26Q12899 539 aaPredicted RBP21■□□□□ 0.95
SCAMP4-207ENST00000472442 WRNQ14191 1432 aaPredicted RBP eCLIP20.98■□□□□ 0.95
SCAMP4-207ENST00000472442 EHMT2Q96KQ7 1210 aa20.96■□□□□ 0.95
SCAMP4-207ENST00000472442 SOGA1O94964 1423 aa20.92■□□□□ 0.94
SCAMP4-207ENST00000472442 SYNJ1O43426 1573 aa20.91■□□□□ 0.94
SCAMP4-207ENST00000472442 CC2D2AQ9P2K1 1620 aa20.89■□□□□ 0.94
SCAMP4-207ENST00000472442 PELP1Q8IZL8 1130 aaKnown RBP20.88■□□□□ 0.93
SCAMP4-207ENST00000472442 RUSC2Q8N2Y8 1516 aa20.85■□□□□ 0.93
SCAMP4-207ENST00000472442 CFTRP13569 1480 aa20.81■□□□□ 0.92
SCAMP4-207ENST00000472442 EEA1Q15075 1411 aa20.78■□□□□ 0.92
SCAMP4-207ENST00000472442 ZEB1P37275 1124 aaPredicted RBP20.75■□□□□ 0.91
SCAMP4-207ENST00000472442 CSRNP3Q8WYN3 585 aa20.74■□□□□ 0.91
SCAMP4-207ENST00000472442 TOP2BQ02880 1626 aa20.74■□□□□ 0.91
SCAMP4-207ENST00000472442 SCAF1Q9H7N4 1312 aaKnown RBP20.7■□□□□ 0.9
SCAMP4-207ENST00000472442 BIVM-ERCC5R4GMW8 1640 aa20.7■□□□□ 0.9
SCAMP4-207ENST00000472442 CADPSQ9ULU8 1353 aa20.66■□□□□ 0.9
SCAMP4-207ENST00000472442 CUX1P39880 1505 aa20.65■□□□□ 0.9
SCAMP4-207ENST00000472442 PRDM2Q13029 1718 aa20.63■□□□□ 0.89
SCAMP4-207ENST00000472442 TNIKQ9UKE5 1360 aa20.59■□□□□ 0.89
SCAMP4-207ENST00000472442 GOLGA3Q08378 1498 aa20.57■□□□□ 0.88
SCAMP4-207ENST00000472442 CEP162Q5TB80 1403 aa20.55■□□□□ 0.88
SCAMP4-207ENST00000472442 KIF21BO75037 1637 aa20.53■□□□□ 0.88
SCAMP4-207ENST00000472442 CEP164Q9UPV0 1460 aa20.53■□□□□ 0.88
SCAMP4-207ENST00000472442 UBTFP17480 764 aaKnown RBP20.52■□□□□ 0.88
SCAMP4-207ENST00000472442 DNAJC5BQ9UF47 199 aa20.46■□□□□ 0.87
SCAMP4-207ENST00000472442 NESP48681 1621 aa20.45■□□□□ 0.86
SCAMP4-207ENST00000472442 RAPGEF2Q9Y4G8 1499 aa20.45■□□□□ 0.86
SCAMP4-207ENST00000472442 FANCD2Q9BXW9 1451 aa20.44■□□□□ 0.86
SCAMP4-207ENST00000472442 KIF27Q86VH2 1401 aa20.38■□□□□ 0.85
SCAMP4-207ENST00000472442 PRXQ9BXM0 1461 aa20.38■□□□□ 0.85
SCAMP4-207ENST00000472442 FGD5Q6ZNL6 1462 aa20.35■□□□□ 0.85
SCAMP4-207ENST00000472442 LAMC3Q9Y6N6 1575 aa20.33■□□□□ 0.85
SCAMP4-207ENST00000472442 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
SCAMP4-207ENST00000472442 CUX2O14529 1486 aa20.29■□□□□ 0.84
SCAMP4-207ENST00000472442 CLIP1P30622 1438 aa20.29■□□□□ 0.84
SCAMP4-207ENST00000472442 DNMBPQ6XZF7 1577 aa20.28■□□□□ 0.84
SCAMP4-207ENST00000472442 TOPBP1Q92547 1522 aa20.26■□□□□ 0.83
SCAMP4-207ENST00000472442 ACIN1Q9UKV3 1341 aaKnown RBP20.25■□□□□ 0.83
SCAMP4-207ENST00000472442 IGF1RP08069 1367 aa20.24■□□□□ 0.83
SCAMP4-207ENST00000472442 POLA1P09884 1462 aaPredicted RBP20.21■□□□□ 0.83
SCAMP4-207ENST00000472442 NEUROD1Q13562 356 aa20.21■□□□□ 0.83
SCAMP4-207ENST00000472442 URB2Q14146 1524 aaKnown RBP20.19■□□□□ 0.82
SCAMP4-207ENST00000472442 RAD54L2Q9Y4B4 1467 aa20.19■□□□□ 0.82
SCAMP4-207ENST00000472442 RANGAP1P46060 587 aaPredicted RBP20.18■□□□□ 0.82
SCAMP4-207ENST00000472442 PDS5BQ9NTI5 1447 aa20.18■□□□□ 0.82
SCAMP4-207ENST00000472442 VPS8Q8N3P4 1428 aa20.15■□□□□ 0.82
SCAMP4-207ENST00000472442 ABCA10Q8WWZ4 1543 aa20.14■□□□□ 0.82
SCAMP4-207ENST00000472442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.14■□□□□ 0.81
SCAMP4-207ENST00000472442 KIF21AQ7Z4S6 1674 aa20.13■□□□□ 0.81
SCAMP4-207ENST00000472442 TTBK1Q5TCY1 1321 aaPredicted RBP20.13■□□□□ 0.81
SCAMP4-207ENST00000472442 CARMIL1Q5VZK9 1371 aa20.11■□□□□ 0.81
SCAMP4-207ENST00000472442 CCER1Q8TC90 406 aaPredicted RBP20.09■□□□□ 0.81
SCAMP4-207ENST00000472442 GTF3C3Q9Y5Q9 886 aa20.07■□□□□ 0.8
SCAMP4-207ENST00000472442 ARAP1Q96P48 1450 aa20.07■□□□□ 0.8
SCAMP4-207ENST00000472442 WDR97A6NE52 1622 aa20.04■□□□□ 0.8
SCAMP4-207ENST00000472442 CENPBP07199 599 aaPredicted RBP20.01■□□□□ 0.79
SCAMP4-207ENST00000472442 DIEXFQ68CQ4 756 aaKnown RBP20.01■□□□□ 0.79
SCAMP4-207ENST00000472442 ARHGAP35Q9NRY4 1499 aa20■□□□□ 0.79
SCAMP4-207ENST00000472442 MYT1Q01538 1121 aa19.98■□□□□ 0.79
SCAMP4-207ENST00000472442 TDRD9Q8NDG6 1382 aaKnown RBP19.97■□□□□ 0.79
SCAMP4-207ENST00000472442 ABCA5Q8WWZ7 1642 aa19.95■□□□□ 0.78
SCAMP4-207ENST00000472442 CUL7Q14999 1698 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms