RNA–Protein interactions for RNA: ENST00000480020.5

HPS1-212, Transcript of HPS1, biogenesis of lysosomal organelles complex 3 subunit 1, humanhuman

TSL 5

Gene HPS1, Length 795 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS1-212ENST00000480020 NISCHQ9Y2I1 1504 aa30.22■■■□□ 2.43
HPS1-212ENST00000480020 CCDC180Q9P1Z9 1646 aa26.8■■□□□ 1.88
HPS1-212ENST00000480020 ABCC9O60706 1549 aa26.2■■□□□ 1.79
HPS1-212ENST00000480020 NACADO15069 1562 aa25.21■■□□□ 1.63
HPS1-212ENST00000480020 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
HPS1-212ENST00000480020 ZCCHC6Q5VYS8 1495 aaKnown RBP25.2■■□□□ 1.62
HPS1-212ENST00000480020 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
HPS1-212ENST00000480020 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
HPS1-212ENST00000480020 DCAF1Q9Y4B6 1507 aa25.02■■□□□ 1.6
HPS1-212ENST00000480020 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
HPS1-212ENST00000480020 PABPN1Q86U42 306 aaKnown RBP eCLIP24.51■■□□□ 1.51
HPS1-212ENST00000480020 SCRIBQ14160 1630 aa24.48■■□□□ 1.51
HPS1-212ENST00000480020 BICRAQ9NZM4 1560 aa24.48■■□□□ 1.51
HPS1-212ENST00000480020 SHROOM4Q9ULL8 1493 aa24.22■■□□□ 1.47
HPS1-212ENST00000480020 DNAJC5BQ9UF47 199 aa24.04■■□□□ 1.44
HPS1-212ENST00000480020 EIF4G1Q04637 1599 aaKnown RBP23.82■■□□□ 1.4
HPS1-212ENST00000480020 CC2D2AQ9P2K1 1620 aa23.69■■□□□ 1.38
HPS1-212ENST00000480020 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
HPS1-212ENST00000480020 SMARCA4P51532 1647 aa23.42■■□□□ 1.34
HPS1-212ENST00000480020 BAZ1AQ9NRL2 1556 aaPredicted RBP23.4■■□□□ 1.34
HPS1-212ENST00000480020 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
HPS1-212ENST00000480020 ATAD2BQ9ULI0 1458 aa23.3■■□□□ 1.32
HPS1-212ENST00000480020 NCAPD3P42695 1498 aa23.29■■□□□ 1.32
HPS1-212ENST00000480020 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
HPS1-212ENST00000480020 PEG3Q9GZU2 1588 aa23.21■■□□□ 1.31
HPS1-212ENST00000480020 HMGXB3Q12766 1538 aa23.17■■□□□ 1.3
HPS1-212ENST00000480020 BAZ1BQ9UIG0 1483 aaKnown RBP23.1■■□□□ 1.29
HPS1-212ENST00000480020 RSF1Q96T23 1441 aaPredicted RBP23.07■■□□□ 1.28
HPS1-212ENST00000480020 WIZO95785 1651 aa23.02■■□□□ 1.28
HPS1-212ENST00000480020 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
HPS1-212ENST00000480020 NESP48681 1621 aa22.71■■□□□ 1.23
HPS1-212ENST00000480020 LAMC3Q9Y6N6 1575 aa22.63■■□□□ 1.21
HPS1-212ENST00000480020 CADPSQ9ULU8 1353 aa22.61■■□□□ 1.21
HPS1-212ENST00000480020 ERCC6Q03468 1493 aa22.56■■□□□ 1.2
HPS1-212ENST00000480020 CCDC88BA6NC98 1476 aa22.54■■□□□ 1.2
HPS1-212ENST00000480020 CFTRP13569 1480 aa22.49■■□□□ 1.19
HPS1-212ENST00000480020 PDS5BQ9NTI5 1447 aa22.48■■□□□ 1.19
HPS1-212ENST00000480020 SUPT5HO00267 1087 aaKnown RBP22.48■■□□□ 1.19
HPS1-212ENST00000480020 KIF21AQ7Z4S6 1674 aa22.39■■□□□ 1.17
HPS1-212ENST00000480020 FANCD2Q9BXW9 1451 aa22.34■■□□□ 1.17
HPS1-212ENST00000480020 THOC2Q8NI27 1593 aaKnown RBP22.33■■□□□ 1.17
HPS1-212ENST00000480020 CUX2O14529 1486 aa22.33■■□□□ 1.16
HPS1-212ENST00000480020 CEP164Q9UPV0 1460 aa22.29■■□□□ 1.16
HPS1-212ENST00000480020 MRC2Q9UBG0 1479 aa22.27■■□□□ 1.16
HPS1-212ENST00000480020 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
HPS1-212ENST00000480020 WDR62O43379 1518 aa22.19■■□□□ 1.14
HPS1-212ENST00000480020 URB2Q14146 1524 aaKnown RBP22.12■■□□□ 1.13
HPS1-212ENST00000480020 TOPBP1Q92547 1522 aa22■■□□□ 1.11
HPS1-212ENST00000480020 ABCC8Q09428 1581 aa21.96■■□□□ 1.11
HPS1-212ENST00000480020 DNMBPQ6XZF7 1577 aa21.96■■□□□ 1.11
HPS1-212ENST00000480020 CUX1P39880 1505 aa21.85■■□□□ 1.09
HPS1-212ENST00000480020 IFT140Q96RY7 1462 aa21.83■■□□□ 1.09
HPS1-212ENST00000480020 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
HPS1-212ENST00000480020 FGD5Q6ZNL6 1462 aa21.77■■□□□ 1.07
HPS1-212ENST00000480020 ZNF608Q9ULD9 1512 aaPredicted RBP21.75■■□□□ 1.07
HPS1-212ENST00000480020 TARBP1Q13395 1621 aaKnown RBP21.74■■□□□ 1.07
HPS1-212ENST00000480020 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
HPS1-212ENST00000480020 RAD54L2Q9Y4B4 1467 aa21.72■■□□□ 1.07
HPS1-212ENST00000480020 SOGA1O94964 1423 aa21.72■■□□□ 1.07
HPS1-212ENST00000480020 SYNJ1O43426 1573 aa21.67■■□□□ 1.06
HPS1-212ENST00000480020 TOP2BQ02880 1626 aa21.66■■□□□ 1.06
HPS1-212ENST00000480020 BIVM-ERCC5R4GMW8 1640 aa21.65■■□□□ 1.06
HPS1-212ENST00000480020 EIF4G3O43432 1585 aaKnown RBP21.63■■□□□ 1.05
HPS1-212ENST00000480020 AQRO60306 1485 aaKnown RBP eCLIP21.62■■□□□ 1.057e-7■■■■■ 30.1
HPS1-212ENST00000480020 TDRD9Q8NDG6 1382 aaKnown RBP21.6■■□□□ 1.05
HPS1-212ENST00000480020 DNAJC5Q9H3Z4 198 aa21.58■■□□□ 1.05
HPS1-212ENST00000480020 ABCA10Q8WWZ4 1543 aa21.56■■□□□ 1.04
HPS1-212ENST00000480020 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
HPS1-212ENST00000480020 GAPVD1Q14C86 1478 aa21.46■■□□□ 1.03
HPS1-212ENST00000480020 ABCA5Q8WWZ7 1642 aa21.46■■□□□ 1.03
HPS1-212ENST00000480020 GRIN2BQ13224 1484 aa21.45■■□□□ 1.03
HPS1-212ENST00000480020 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
HPS1-212ENST00000480020 OSCARQ8IYS5 282 aa21.4■■□□□ 1.02
HPS1-212ENST00000480020 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.02
HPS1-212ENST00000480020 PBRM1Q86U86 1689 aa21.37■■□□□ 1.01
HPS1-212ENST00000480020 CHD1O14646 1710 aa21.32■■□□□ 1
HPS1-212ENST00000480020 FBLN2P98095 1184 aa21.31■■□□□ 1
HPS1-212ENST00000480020 SYNJ2O15056 1496 aa21.31■■□□□ 1
HPS1-212ENST00000480020 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
HPS1-212ENST00000480020 CHMP7Q8WUX9 453 aaPredicted RBP21.28■■□□□ 1
HPS1-212ENST00000480020 KIF27Q86VH2 1401 aa21.26■□□□□ 0.99
HPS1-212ENST00000480020 ADAMTS12P58397 1594 aa21.25■□□□□ 0.99
HPS1-212ENST00000480020 FHAD1B1AJZ9 1412 aa21.23■□□□□ 0.99
HPS1-212ENST00000480020 TRIM41Q8WV44 630 aa21.22■□□□□ 0.99
HPS1-212ENST00000480020 IGF1RP08069 1367 aa21.2■□□□□ 0.98
HPS1-212ENST00000480020 GRIN2AQ12879 1464 aa21.18■□□□□ 0.98
HPS1-212ENST00000480020 CLASP1Q7Z460 1538 aa21.15■□□□□ 0.98
HPS1-212ENST00000480020 NUP160Q12769 1436 aa21.11■□□□□ 0.97
HPS1-212ENST00000480020 RUSC2Q8N2Y8 1516 aa21.1■□□□□ 0.97
HPS1-212ENST00000480020 CUL7Q14999 1698 aa21.08■□□□□ 0.96
HPS1-212ENST00000480020 CEP170Q5SW79 1584 aa21.07■□□□□ 0.96
HPS1-212ENST00000480020 ARHGEF11O15085 1522 aa21.06■□□□□ 0.96
HPS1-212ENST00000480020 CARMIL1Q5VZK9 1371 aa21.05■□□□□ 0.96
HPS1-212ENST00000480020 RIMBP3CA6NJZ7 1639 aa21.04■□□□□ 0.96
HPS1-212ENST00000480020 RIMBP3BA6NNM3 1639 aa21.04■□□□□ 0.96
HPS1-212ENST00000480020 RIMBP3Q9UFD9 1639 aa21.04■□□□□ 0.96
HPS1-212ENST00000480020 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
HPS1-212ENST00000480020 RAPGEF2Q9Y4G8 1499 aa20.93■□□□□ 0.94
HPS1-212ENST00000480020 ARAP1Q96P48 1450 aa20.92■□□□□ 0.94
HPS1-212ENST00000480020 SHROOM2Q13796 1616 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms