RNA–Protein interactions for RNA: ENST00000583879.5

VAPA-207, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-207ENST00000583879 AEBP2Q6ZN18 517 aaPredicted RBP18.56■□□□□ 0.56
VAPA-207ENST00000583879 CHIC1Q5VXU3 224 aa17.46■□□□□ 0.39
VAPA-207ENST00000583879 SENP3Q9H4L4 574 aaPredicted RBP15.94■□□□□ 0.14
VAPA-207ENST00000583879 PHF23Q9BUL5 403 aaPredicted RBP15.68■□□□□ 0.1
VAPA-207ENST00000583879 FOXD1Q16676 465 aa14.84□□□□□ -0.03
VAPA-207ENST00000583879 MSH5O43196 834 aa14.01□□□□□ -0.17
VAPA-207ENST00000583879 POTEDQ86YR6 584 aa13.99□□□□□ -0.17
VAPA-207ENST00000583879 PLPPR3Q6T4P5 718 aa13.89□□□□□ -0.19
VAPA-207ENST00000583879 PIAS4Q8N2W9 510 aaPredicted RBP13.85□□□□□ -0.19
VAPA-207ENST00000583879 PPP6R1Q9UPN7 881 aa13.7□□□□□ -0.22
VAPA-207ENST00000583879 ADRA2BP18089 450 aa13.66□□□□□ -0.22
VAPA-207ENST00000583879 NISCHQ9Y2I1 1504 aa13.43□□□□□ -0.26
VAPA-207ENST00000583879 MAPK8IP2Q13387 824 aaPredicted RBP12.6□□□□□ -0.39
VAPA-207ENST00000583879 DMRT2Q9Y5R5 561 aa12.59□□□□□ -0.39
VAPA-207ENST00000583879 SCAF1Q9H7N4 1312 aaKnown RBP12.57□□□□□ -0.4
VAPA-207ENST00000583879 ABCC9O60706 1549 aa12.27□□□□□ -0.44
VAPA-207ENST00000583879 CACNB1Q02641 598 aaPredicted RBP12.15□□□□□ -0.46
VAPA-207ENST00000583879 PPP4R3CPQ6ZMV5 832 aa12.13□□□□□ -0.47
VAPA-207ENST00000583879 DCAF8L1A6NGE4 600 aa12.12□□□□□ -0.47
VAPA-207ENST00000583879 HOXD11P31277 338 aaPredicted RBP12.03□□□□□ -0.48
VAPA-207ENST00000583879 CCDC180Q9P1Z9 1646 aa12.01□□□□□ -0.49
VAPA-207ENST00000583879 CNKSR2Q8WXI2 1034 aa11.96□□□□□ -0.49
VAPA-207ENST00000583879 RNF39Q9H2S5 420 aa11.91□□□□□ -0.5
VAPA-207ENST00000583879 RNF216Q9NWF9 866 aaPredicted RBP11.9□□□□□ -0.5
VAPA-207ENST00000583879 C1QBPQ07021 282 aaKnown RBP11.75□□□□□ -0.53
VAPA-207ENST00000583879 DNAJC5BQ9UF47 199 aa11.73□□□□□ -0.53
VAPA-207ENST00000583879 NCBP3Q53F19 620 aaKnown RBP11.64□□□□□ -0.55
VAPA-207ENST00000583879 RB1CC1Q8TDY2 1594 aa11.57□□□□□ -0.56
VAPA-207ENST00000583879 DCAF8L2P0C7V8 631 aa11.52□□□□□ -0.57
VAPA-207ENST00000583879 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.51□□□□□ -0.57
VAPA-207ENST00000583879 NACADO15069 1562 aa11.47□□□□□ -0.57
VAPA-207ENST00000583879 PABPN1Q86U42 306 aaKnown RBP eCLIP11.47□□□□□ -0.57
VAPA-207ENST00000583879 NPM3O75607 178 aaKnown RBP11.42□□□□□ -0.58
VAPA-207ENST00000583879 MYO15BQ96JP2 1530 aa11.29□□□□□ -0.6
VAPA-207ENST00000583879 BICRAQ9NZM4 1560 aa11.24□□□□□ -0.61
VAPA-207ENST00000583879 UNC13AQ9UPW8 1703 aa11.2□□□□□ -0.62
VAPA-207ENST00000583879 U3KPZ7 1027 aaPredicted RBP11.19□□□□□ -0.62
VAPA-207ENST00000583879 CAPN15O75808 1086 aa11.12□□□□□ -0.63
VAPA-207ENST00000583879 SPINK5Q9NQ38 1064 aaPredicted RBP11.09□□□□□ -0.63
VAPA-207ENST00000583879 DSG3P32926 999 aa11.08□□□□□ -0.64
VAPA-207ENST00000583879 ZCCHC6Q5VYS8 1495 aaKnown RBP11.07□□□□□ -0.64
VAPA-207ENST00000583879 CECR2Q9BXF3 1484 aa11.07□□□□□ -0.64
VAPA-207ENST00000583879 SHROOM4Q9ULL8 1493 aa11.07□□□□□ -0.64
VAPA-207ENST00000583879 DCAF1Q9Y4B6 1507 aa11.07□□□□□ -0.64
VAPA-207ENST00000583879 CC2D2AQ9P2K1 1620 aa11.03□□□□□ -0.64
VAPA-207ENST00000583879 KCNA4P22459 653 aa11.02□□□□□ -0.65
VAPA-207ENST00000583879 EIF4G1Q04637 1599 aaKnown RBP10.98□□□□□ -0.65
VAPA-207ENST00000583879 SCRIBQ14160 1630 aa10.97□□□□□ -0.65
VAPA-207ENST00000583879 SLC4A2P04920 1241 aa10.94□□□□□ -0.66
VAPA-207ENST00000583879 APLP2Q06481 763 aa10.94□□□□□ -0.66
VAPA-207ENST00000583879 POTEHQ6S545 545 aa10.94□□□□□ -0.66
VAPA-207ENST00000583879 TRHP20396 242 aaPredicted RBP10.9□□□□□ -0.66
VAPA-207ENST00000583879 DNAJC5Q9H3Z4 198 aa10.89□□□□□ -0.67
VAPA-207ENST00000583879 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.87□□□□□ -0.67
VAPA-207ENST00000583879 HNRNPUL2Q1KMD3 747 aaKnown RBP10.87□□□□□ -0.67
VAPA-207ENST00000583879 ZNF219Q9P2Y4 722 aaPredicted RBP10.87□□□□□ -0.67
VAPA-207ENST00000583879 ABCB7O75027 752 aa10.83□□□□□ -0.68
VAPA-207ENST00000583879 SAMD1Q6SPF0 538 aaPredicted RBP10.79□□□□□ -0.68
VAPA-207ENST00000583879 NCAPD3P42695 1498 aa10.64□□□□□ -0.71
VAPA-207ENST00000583879 RBM42Q9BTD8 480 aaKnown RBP10.63□□□□□ -0.71
VAPA-207ENST00000583879 CUX2O14529 1486 aa10.62□□□□□ -0.71
VAPA-207ENST00000583879 MYCNP04198 464 aaPredicted RBP10.6□□□□□ -0.71
VAPA-207ENST00000583879 ERCC6Q03468 1493 aa10.6□□□□□ -0.71
VAPA-207ENST00000583879 ATAD2BQ9ULI0 1458 aa10.57□□□□□ -0.72
VAPA-207ENST00000583879 POLA2Q14181 598 aa10.55□□□□□ -0.72
VAPA-207ENST00000583879 SMARCA2P51531 1590 aa10.5□□□□□ -0.73
VAPA-207ENST00000583879 NESP48681 1621 aa10.48□□□□□ -0.73
VAPA-207ENST00000583879 HMGXB3Q12766 1538 aa10.48□□□□□ -0.73
VAPA-207ENST00000583879 SMARCA4P51532 1647 aa10.45□□□□□ -0.74
VAPA-207ENST00000583879 CHRDL2Q6WN34 429 aa10.45□□□□□ -0.74
VAPA-207ENST00000583879 BAZ1BQ9UIG0 1483 aaKnown RBP10.43□□□□□ -0.74
VAPA-207ENST00000583879 BAZ1AQ9NRL2 1556 aaPredicted RBP10.41□□□□□ -0.74
VAPA-207ENST00000583879 SLC4A1APQ9BWU0 796 aaKnown RBP10.38□□□□□ -0.75
VAPA-207ENST00000583879 PEG3Q9GZU2 1588 aa10.37□□□□□ -0.75
VAPA-207ENST00000583879 PDS5BQ9NTI5 1447 aa10.37□□□□□ -0.75
VAPA-207ENST00000583879 FOXD4L1Q9NU39 408 aa10.37□□□□□ -0.75
VAPA-207ENST00000583879 LAMC3Q9Y6N6 1575 aa10.36□□□□□ -0.75
VAPA-207ENST00000583879 ZBTB12Q9Y330 459 aaPredicted RBP10.35□□□□□ -0.75
VAPA-207ENST00000583879 MROH2BQ7Z745 1585 aa10.35□□□□□ -0.75
VAPA-207ENST00000583879 THOC2Q8NI27 1593 aaKnown RBP10.34□□□□□ -0.75
VAPA-207ENST00000583879 CADPSQ9ULU8 1353 aa10.33□□□□□ -0.76
VAPA-207ENST00000583879 TRIM41Q8WV44 630 aa10.32□□□□□ -0.76
VAPA-207ENST00000583879 ATF5Q9Y2D1 282 aaPredicted RBP10.32□□□□□ -0.76
VAPA-207ENST00000583879 AKT1S1Q96B36 256 aa10.31□□□□□ -0.76
VAPA-207ENST00000583879 KIF21AQ7Z4S6 1674 aa10.25□□□□□ -0.77
VAPA-207ENST00000583879 MRC2Q9UBG0 1479 aa10.24□□□□□ -0.77
VAPA-207ENST00000583879 REM2Q8IYK8 340 aaPredicted RBP10.21□□□□□ -0.77
VAPA-207ENST00000583879 OSCARQ8IYS5 282 aa10.21□□□□□ -0.77
VAPA-207ENST00000583879 WDR62O43379 1518 aa10.21□□□□□ -0.78
VAPA-207ENST00000583879 CEP164Q9UPV0 1460 aa10.17□□□□□ -0.78
VAPA-207ENST00000583879 FANCD2Q9BXW9 1451 aa10.17□□□□□ -0.78
VAPA-207ENST00000583879 WIZO95785 1651 aa10.16□□□□□ -0.78
VAPA-207ENST00000583879 SP7Q8TDD2 431 aaPredicted RBP10.16□□□□□ -0.78
VAPA-207ENST00000583879 CFTRP13569 1480 aa10.15□□□□□ -0.78
VAPA-207ENST00000583879 PIP4P2Q8N4L2 257 aa10.14□□□□□ -0.79
VAPA-207ENST00000583879 RSF1Q96T23 1441 aaPredicted RBP10.11□□□□□ -0.79
VAPA-207ENST00000583879 PITPNM1O00562 1244 aa10.09□□□□□ -0.79
VAPA-207ENST00000583879 ZBTB22O15209 634 aa10.09□□□□□ -0.79
VAPA-207ENST00000583879 URB2Q14146 1524 aaKnown RBP10.08□□□□□ -0.8
VAPA-207ENST00000583879 ATXN8OSP0DMR3 200 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms