RNA–Protein interactions for RNA: ENST00000361490.8

HPS1-204, Transcript of HPS1, biogenesis of lysosomal organelles complex 3 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS1, Length 3,678 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS1-204ENST00000361490 NISCHQ9Y2I1 1504 aa24.14■■□□□ 1.46
HPS1-204ENST00000361490 DCAF8L2P0C7V8 631 aa21.77■■□□□ 1.08
HPS1-204ENST00000361490 SHROOM4Q9ULL8 1493 aa21.26■□□□□ 0.99
HPS1-204ENST00000361490 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
HPS1-204ENST00000361490 ABCC9O60706 1549 aa20.35■□□□□ 0.85
HPS1-204ENST00000361490 CCDC180Q9P1Z9 1646 aa20.32■□□□□ 0.84
HPS1-204ENST00000361490 ZCCHC6Q5VYS8 1495 aaKnown RBP20.16■□□□□ 0.82
HPS1-204ENST00000361490 PABPN1Q86U42 306 aaKnown RBP eCLIP19.69■□□□□ 0.74
HPS1-204ENST00000361490 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
HPS1-204ENST00000361490 EHMT2Q96KQ7 1210 aa19.56■□□□□ 0.72
HPS1-204ENST00000361490 DCAF1Q9Y4B6 1507 aa19.38■□□□□ 0.69
HPS1-204ENST00000361490 FAM9AQ8IZU1 332 aaPredicted RBP19.38■□□□□ 0.69
HPS1-204ENST00000361490 CHIC1Q5VXU3 224 aa19.32■□□□□ 0.68
HPS1-204ENST00000361490 NACADO15069 1562 aa19.24■□□□□ 0.67
HPS1-204ENST00000361490 RB1CC1Q8TDY2 1594 aa19.2■□□□□ 0.66
HPS1-204ENST00000361490 TRIM41Q8WV44 630 aa19.18■□□□□ 0.66
HPS1-204ENST00000361490 CECR2Q9BXF3 1484 aa19.12■□□□□ 0.65
HPS1-204ENST00000361490 RSF1Q96T23 1441 aaPredicted RBP19.07■□□□□ 0.64
HPS1-204ENST00000361490 LOC105371045A0A1W2PR82 267 aa19.07■□□□□ 0.64
HPS1-204ENST00000361490 MYO15BQ96JP2 1530 aa18.96■□□□□ 0.63
HPS1-204ENST00000361490 MROH2BQ7Z745 1585 aa18.86■□□□□ 0.61
HPS1-204ENST00000361490 RANGAP1P46060 587 aaPredicted RBP18.75■□□□□ 0.59
HPS1-204ENST00000361490 TTBK1Q5TCY1 1321 aaPredicted RBP18.71■□□□□ 0.58
HPS1-204ENST00000361490 WIZO95785 1651 aa18.66■□□□□ 0.58
HPS1-204ENST00000361490 PCGF6Q9BYE7 350 aa18.65■□□□□ 0.58
HPS1-204ENST00000361490 PPARGC1BQ86YN6 1023 aaKnown RBP18.65■□□□□ 0.58
HPS1-204ENST00000361490 BAZ1AQ9NRL2 1556 aaPredicted RBP18.62■□□□□ 0.57
HPS1-204ENST00000361490 UBTFP17480 764 aaKnown RBP18.57■□□□□ 0.56
HPS1-204ENST00000361490 CCDC88BA6NC98 1476 aa18.41■□□□□ 0.54
HPS1-204ENST00000361490 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
HPS1-204ENST00000361490 BICRAQ9NZM4 1560 aa18.4■□□□□ 0.54
HPS1-204ENST00000361490 BAZ1BQ9UIG0 1483 aaKnown RBP18.4■□□□□ 0.54
HPS1-204ENST00000361490 UNC13AQ9UPW8 1703 aa18.38■□□□□ 0.53
HPS1-204ENST00000361490 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
HPS1-204ENST00000361490 ABCC8Q09428 1581 aa18.28■□□□□ 0.52
HPS1-204ENST00000361490 TOP2AP11388 1531 aaKnown RBP18.25■□□□□ 0.51
HPS1-204ENST00000361490 CSRNP3Q8WYN3 585 aa18.22■□□□□ 0.51
HPS1-204ENST00000361490 APLP2Q06481 763 aa18.14■□□□□ 0.49
HPS1-204ENST00000361490 ATP1B4Q9UN42 357 aaPredicted RBP18.14■□□□□ 0.49
HPS1-204ENST00000361490 WRNQ14191 1432 aaPredicted RBP eCLIP18.13■□□□□ 0.49
HPS1-204ENST00000361490 SOGA1O94964 1423 aa18.12■□□□□ 0.49
HPS1-204ENST00000361490 SMARCA2P51531 1590 aa18.12■□□□□ 0.49
HPS1-204ENST00000361490 EIF4G1Q04637 1599 aaKnown RBP18.1■□□□□ 0.49
HPS1-204ENST00000361490 TRIM26Q12899 539 aaPredicted RBP18.07■□□□□ 0.48
HPS1-204ENST00000361490 DNAJC5BQ9UF47 199 aa18.07■□□□□ 0.48
HPS1-204ENST00000361490 RUSC2Q8N2Y8 1516 aa17.98■□□□□ 0.47
HPS1-204ENST00000361490 P3H3Q8IVL6 736 aa17.93■□□□□ 0.46
HPS1-204ENST00000361490 NCAPD3P42695 1498 aa17.92■□□□□ 0.46
HPS1-204ENST00000361490 HNRNPUL2Q1KMD3 747 aaKnown RBP17.84■□□□□ 0.45
HPS1-204ENST00000361490 CC2D2AQ9P2K1 1620 aa17.84■□□□□ 0.45
HPS1-204ENST00000361490 CADPSQ9ULU8 1353 aa17.83■□□□□ 0.45
HPS1-204ENST00000361490 CCER1Q8TC90 406 aaPredicted RBP17.81■□□□□ 0.44
HPS1-204ENST00000361490 ITGAEP38570 1179 aa17.81■□□□□ 0.44
HPS1-204ENST00000361490 HRCP23327 699 aa17.8■□□□□ 0.44
HPS1-204ENST00000361490 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.78■□□□□ 0.44
HPS1-204ENST00000361490 FBLN2P98095 1184 aa17.78■□□□□ 0.44
HPS1-204ENST00000361490 CEP162Q5TB80 1403 aa17.77■□□□□ 0.43
HPS1-204ENST00000361490 NESP48681 1621 aa17.75■□□□□ 0.43
HPS1-204ENST00000361490 PEG3Q9GZU2 1588 aa17.74■□□□□ 0.43
HPS1-204ENST00000361490 SYNJ1O43426 1573 aa17.71■□□□□ 0.43
HPS1-204ENST00000361490 ARID3CA6NKF2 412 aa17.7■□□□□ 0.42
HPS1-204ENST00000361490 GOLGA3Q08378 1498 aa17.69■□□□□ 0.42
HPS1-204ENST00000361490 CUX2O14529 1486 aa17.68■□□□□ 0.42
HPS1-204ENST00000361490 EEA1Q15075 1411 aa17.68■□□□□ 0.42
HPS1-204ENST00000361490 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
HPS1-204ENST00000361490 CLIP1P30622 1438 aa17.67■□□□□ 0.42
HPS1-204ENST00000361490 HMGXB3Q12766 1538 aa17.66■□□□□ 0.42
HPS1-204ENST00000361490 TNIKQ9UKE5 1360 aa17.66■□□□□ 0.42
HPS1-204ENST00000361490 CFTRP13569 1480 aa17.64■□□□□ 0.41
HPS1-204ENST00000361490 FANCD2Q9BXW9 1451 aa17.64■□□□□ 0.41
HPS1-204ENST00000361490 TDRD9Q8NDG6 1382 aaKnown RBP17.63■□□□□ 0.41
HPS1-204ENST00000361490 CEP164Q9UPV0 1460 aa17.62■□□□□ 0.41
HPS1-204ENST00000361490 RAPGEF2Q9Y4G8 1499 aa17.62■□□□□ 0.41
HPS1-204ENST00000361490 RAD54L2Q9Y4B4 1467 aa17.55■□□□□ 0.4
HPS1-204ENST00000361490 CUX1P39880 1505 aa17.53■□□□□ 0.4
HPS1-204ENST00000361490 CARMIL1Q5VZK9 1371 aa17.53■□□□□ 0.4
HPS1-204ENST00000361490 PDS5BQ9NTI5 1447 aa17.52■□□□□ 0.4
HPS1-204ENST00000361490 ERCC6Q03468 1493 aa17.51■□□□□ 0.39
HPS1-204ENST00000361490 FGD5Q6ZNL6 1462 aa17.51■□□□□ 0.39
HPS1-204ENST00000361490 FAM50AQ14320 339 aaKnown RBP17.49■□□□□ 0.39
HPS1-204ENST00000361490 IGF1RP08069 1367 aa17.44■□□□□ 0.38
HPS1-204ENST00000361490 ZEB1P37275 1124 aaPredicted RBP17.42■□□□□ 0.38
HPS1-204ENST00000361490 TOP2BQ02880 1626 aa17.42■□□□□ 0.38
HPS1-204ENST00000361490 KANK4Q5T7N3 995 aaPredicted RBP17.4■□□□□ 0.38
HPS1-204ENST00000361490 CHMP7Q8WUX9 453 aaPredicted RBP17.4■□□□□ 0.38
HPS1-204ENST00000361490 TOPBP1Q92547 1522 aa17.32■□□□□ 0.36
HPS1-204ENST00000361490 POLA1P09884 1462 aaPredicted RBP17.31■□□□□ 0.36
HPS1-204ENST00000361490 AQRO60306 1485 aaKnown RBP eCLIP17.3■□□□□ 0.367e-7■■■■■ 30.1
HPS1-204ENST00000361490 VPS8Q8N3P4 1428 aa17.3■□□□□ 0.36
HPS1-204ENST00000361490 PRXQ9BXM0 1461 aa17.24■□□□□ 0.35
HPS1-204ENST00000361490 FHOD3Q2V2M9 1422 aa17.23■□□□□ 0.35
HPS1-204ENST00000361490 URB2Q14146 1524 aaKnown RBP17.22■□□□□ 0.35
HPS1-204ENST00000361490 GAPVD1Q14C86 1478 aa17.21■□□□□ 0.35
HPS1-204ENST00000361490 KIF21BO75037 1637 aa17.17■□□□□ 0.34
HPS1-204ENST00000361490 BIVM-ERCC5R4GMW8 1640 aa17.17■□□□□ 0.34
HPS1-204ENST00000361490 LAMC3Q9Y6N6 1575 aa17.16■□□□□ 0.34
HPS1-204ENST00000361490 ARAP1Q96P48 1450 aa17.16■□□□□ 0.34
HPS1-204ENST00000361490 ZNF777Q9ULD5 760 aaPredicted RBP17.16■□□□□ 0.34
HPS1-204ENST00000361490 DNMBPQ6XZF7 1577 aa17.16■□□□□ 0.34
HPS1-204ENST00000361490 CHIC2Q9UKJ5 165 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms