RNA–Protein interactions for RNA: ENST00000261646.9

SREBF1-201, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SREBF1, Length 4,178 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-201ENST00000261646 NISCHQ9Y2I1 1504 aa28.68■■■□□ 2.18
SREBF1-201ENST00000261646 DCAF8L2P0C7V8 631 aa27.5■■□□□ 1.99
SREBF1-201ENST00000261646 SUPT5HO00267 1087 aaKnown RBP27.05■■□□□ 1.92
SREBF1-201ENST00000261646 SHROOM4Q9ULL8 1493 aa27.01■■□□□ 1.91
SREBF1-201ENST00000261646 PCGF6Q9BYE7 350 aa26.3■■□□□ 1.8
SREBF1-201ENST00000261646 EHMT2Q96KQ7 1210 aa25.85■■□□□ 1.73
SREBF1-201ENST00000261646 HRCP23327 699 aa25.77■■□□□ 1.72
SREBF1-201ENST00000261646 PELP1Q8IZL8 1130 aaKnown RBP25.68■■□□□ 1.7
SREBF1-201ENST00000261646 PPARGC1BQ86YN6 1023 aaKnown RBP25.42■■□□□ 1.66
SREBF1-201ENST00000261646 FAM9AQ8IZU1 332 aaPredicted RBP25.37■■□□□ 1.65
SREBF1-201ENST00000261646 ZEB1P37275 1124 aaPredicted RBP25.34■■□□□ 1.65
SREBF1-201ENST00000261646 CENPBP07199 599 aaPredicted RBP25.16■■□□□ 1.62
SREBF1-201ENST00000261646 CHIC1Q5VXU3 224 aa25.09■■□□□ 1.61
SREBF1-201ENST00000261646 TRIM26Q12899 539 aaPredicted RBP25.06■■□□□ 1.6
SREBF1-201ENST00000261646 TTBK1Q5TCY1 1321 aaPredicted RBP25.04■■□□□ 1.6
SREBF1-201ENST00000261646 CCER1Q8TC90 406 aaPredicted RBP25■■□□□ 1.59
SREBF1-201ENST00000261646 LOC105371045A0A1W2PR82 267 aa24.99■■□□□ 1.59
SREBF1-201ENST00000261646 MYT1Q01538 1121 aa24.96■■□□□ 1.59
SREBF1-201ENST00000261646 TRIM41Q8WV44 630 aa24.88■■□□□ 1.57
SREBF1-201ENST00000261646 YTHDC1Q96MU7 727 aaKnown RBP24.75■■□□□ 1.55
SREBF1-201ENST00000261646 APLP2Q06481 763 aa24.54■■□□□ 1.52
SREBF1-201ENST00000261646 RANGAP1P46060 587 aaPredicted RBP24.4■■□□□ 1.5
SREBF1-201ENST00000261646 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.32■■□□□ 1.48
SREBF1-201ENST00000261646 GTF3C3Q9Y5Q9 886 aa24.28■■□□□ 1.48
SREBF1-201ENST00000261646 DIEXFQ68CQ4 756 aaKnown RBP24.28■■□□□ 1.48
SREBF1-201ENST00000261646 UBTFP17480 764 aaKnown RBP24.19■■□□□ 1.46
SREBF1-201ENST00000261646 ERICH6Q7L0X2 663 aa24.11■■□□□ 1.45
SREBF1-201ENST00000261646 ACIN1Q9UKV3 1341 aaKnown RBP24.1■■□□□ 1.45
SREBF1-201ENST00000261646 SCAF1Q9H7N4 1312 aaKnown RBP24.05■■□□□ 1.44
SREBF1-201ENST00000261646 NEFLP07196 543 aa23.95■■□□□ 1.42
SREBF1-201ENST00000261646 ZCCHC6Q5VYS8 1495 aaKnown RBP23.95■■□□□ 1.42
SREBF1-201ENST00000261646 MYO15BQ96JP2 1530 aa23.9■■□□□ 1.42
SREBF1-201ENST00000261646 HNRNPUL2Q1KMD3 747 aaKnown RBP23.9■■□□□ 1.42
SREBF1-201ENST00000261646 DCAF1Q9Y4B6 1507 aa23.83■■□□□ 1.4
SREBF1-201ENST00000261646 NEUROD1Q13562 356 aa23.83■■□□□ 1.4
SREBF1-201ENST00000261646 ABCC9O60706 1549 aa23.79■■□□□ 1.4
SREBF1-201ENST00000261646 ZNF316A6NFI3 1004 aaPredicted RBP23.64■■□□□ 1.38
SREBF1-201ENST00000261646 ATP1B4Q9UN42 357 aaPredicted RBP23.61■■□□□ 1.37
SREBF1-201ENST00000261646 PABPN1Q86U42 306 aaKnown RBP eCLIP23.58■■□□□ 1.36
SREBF1-201ENST00000261646 ITGAEP38570 1179 aa23.53■■□□□ 1.36
SREBF1-201ENST00000261646 BCANQ96GW7 911 aa23.49■■□□□ 1.35
SREBF1-201ENST00000261646 SCRIBQ14160 1630 aa23.4■■□□□ 1.34
SREBF1-201ENST00000261646 CCDC180Q9P1Z9 1646 aa23.29■■□□□ 1.32
SREBF1-201ENST00000261646 MIER1Q8N108 512 aa23.18■■□□□ 1.3
SREBF1-201ENST00000261646 RSF1Q96T23 1441 aaPredicted RBP23.14■■□□□ 1.3
SREBF1-201ENST00000261646 CSRNP3Q8WYN3 585 aa23.08■■□□□ 1.29
SREBF1-201ENST00000261646 CNGB1Q14028 1251 aaPredicted RBP23.01■■□□□ 1.27
SREBF1-201ENST00000261646 FKBP8Q14318 412 aa22.98■■□□□ 1.27
SREBF1-201ENST00000261646 CLSPNQ9HAW4 1339 aa22.97■■□□□ 1.27
SREBF1-201ENST00000261646 RTL5Q5HYW3 569 aaPredicted RBP22.94■■□□□ 1.26
SREBF1-201ENST00000261646 CDK11AQ9UQ88 783 aaPredicted RBP22.93■■□□□ 1.26
SREBF1-201ENST00000261646 POLR3GLQ9BT43 218 aa22.91■■□□□ 1.26
SREBF1-201ENST00000261646 ANP32CO43423 234 aa22.9■■□□□ 1.26
SREBF1-201ENST00000261646 FAM50AQ14320 339 aaKnown RBP22.83■■□□□ 1.25
SREBF1-201ENST00000261646 CECR2Q9BXF3 1484 aa22.82■■□□□ 1.24
SREBF1-201ENST00000261646 DAXXQ9UER7 740 aaPredicted RBP22.79■■□□□ 1.24
SREBF1-201ENST00000261646 ANP32EQ9BTT0 268 aa22.78■■□□□ 1.24
SREBF1-201ENST00000261646 DDX10Q13206 875 aaKnown RBP22.72■■□□□ 1.23
SREBF1-201ENST00000261646 P3H3Q8IVL6 736 aa22.71■■□□□ 1.23
SREBF1-201ENST00000261646 TRIM52Q96A61 297 aa22.68■■□□□ 1.22
SREBF1-201ENST00000261646 RB1CC1Q8TDY2 1594 aa22.65■■□□□ 1.22
SREBF1-201ENST00000261646 SUPT16HQ9Y5B9 1047 aaKnown RBP22.63■■□□□ 1.21
SREBF1-201ENST00000261646 CEP162Q5TB80 1403 aa22.54■■□□□ 1.2
SREBF1-201ENST00000261646 HNRNPUQ00839 825 aaKnown RBP eCLIP22.53■■□□□ 1.22e-6■■□□□ 12.3
SREBF1-201ENST00000261646 BCL11AQ9H165 835 aa22.53■■□□□ 1.2
SREBF1-201ENST00000261646 MROH2BQ7Z745 1585 aa22.49■■□□□ 1.19
SREBF1-201ENST00000261646 IRX6P78412 446 aaPredicted RBP22.47■■□□□ 1.19
SREBF1-201ENST00000261646 HIRIP3Q9BW71 556 aaPredicted RBP22.45■■□□□ 1.18
SREBF1-201ENST00000261646 ANP32AP39687 249 aaKnown RBP22.44■■□□□ 1.18
SREBF1-201ENST00000261646 SOGA1O94964 1423 aa22.44■■□□□ 1.18
SREBF1-201ENST00000261646 NBR1Q14596 966 aa22.44■■□□□ 1.18
SREBF1-201ENST00000261646 ARID3CA6NKF2 412 aa22.42■■□□□ 1.18
SREBF1-201ENST00000261646 CLIP1P30622 1438 aa22.38■■□□□ 1.17
SREBF1-201ENST00000261646 NPM2Q86SE8 214 aaKnown RBP22.36■■□□□ 1.17
SREBF1-201ENST00000261646 MYT1LQ9UL68 1186 aa22.35■■□□□ 1.17
SREBF1-201ENST00000261646 TSHZ2Q9NRE2 1034 aa22.32■■□□□ 1.16
SREBF1-201ENST00000261646 ABCC8Q09428 1581 aa22.32■■□□□ 1.16
SREBF1-201ENST00000261646 FAM9BQ8IZU0 186 aa22.31■■□□□ 1.16
SREBF1-201ENST00000261646 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
SREBF1-201ENST00000261646 NACADO15069 1562 aa22.3■■□□□ 1.16
SREBF1-201ENST00000261646 WRNQ14191 1432 aaPredicted RBP eCLIP22.28■■□□□ 1.162e-6■■■■□ 26.3
SREBF1-201ENST00000261646 TNIKQ9UKE5 1360 aa22.27■■□□□ 1.16
SREBF1-201ENST00000261646 EIF5BO60841 1220 aaKnown RBP22.27■■□□□ 1.15
SREBF1-201ENST00000261646 ZNF326Q5BKZ1 582 aaKnown RBP22.27■■□□□ 1.15
SREBF1-201ENST00000261646 TONSLQ96HA7 1378 aa22.25■■□□□ 1.15
SREBF1-201ENST00000261646 RBM19Q9Y4C8 960 aaKnown RBP22.23■■□□□ 1.15
SREBF1-201ENST00000261646 GOLGA3Q08378 1498 aa22.21■■□□□ 1.15
SREBF1-201ENST00000261646 WIZO95785 1651 aa22.21■■□□□ 1.15
SREBF1-201ENST00000261646 ZBTB47Q9UFB7 747 aaPredicted RBP22.19■■□□□ 1.14
SREBF1-201ENST00000261646 BAZ1AQ9NRL2 1556 aaPredicted RBP22.17■■□□□ 1.14
SREBF1-201ENST00000261646 CCDC136Q96JN2 1154 aa22.16■■□□□ 1.14
SREBF1-201ENST00000261646 EEA1Q15075 1411 aa22.1■■□□□ 1.13
SREBF1-201ENST00000261646 MRS2Q9HD23 443 aa22.09■■□□□ 1.13
SREBF1-201ENST00000261646 RUSC2Q8N2Y8 1516 aa22.06■■□□□ 1.12
SREBF1-201ENST00000261646 CHIC2Q9UKJ5 165 aa22.05■■□□□ 1.12
SREBF1-201ENST00000261646 SIN3AQ96ST3 1273 aa22.03■■□□□ 1.12
SREBF1-201ENST00000261646 FBLN2P98095 1184 aa22.02■■□□□ 1.12
SREBF1-201ENST00000261646 KANK4Q5T7N3 995 aaPredicted RBP22■■□□□ 1.11
SREBF1-201ENST00000261646 SALL2Q9Y467 1007 aaPredicted RBP22■■□□□ 1.11
SREBF1-201ENST00000261646 CEP164Q9UPV0 1460 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms