RNA–Protein interactions for RNA: ENST00000562357.5

CMTM3-204, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 4

Gene CMTM3, Length 792 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-204ENST00000562357 NISCHQ9Y2I1 1504 aa43.65■■■■■ 4.58
CMTM3-204ENST00000562357 CCDC180Q9P1Z9 1646 aa38.96■■■■□ 3.83
CMTM3-204ENST00000562357 ABCC9O60706 1549 aa38.5■■■■□ 3.75
CMTM3-204ENST00000562357 RB1CC1Q8TDY2 1594 aa36.9■■■■□ 3.5
CMTM3-204ENST00000562357 NACADO15069 1562 aa36.75■■■■□ 3.47
CMTM3-204ENST00000562357 DCAF8L2P0C7V8 631 aa36.74■■■■□ 3.47
CMTM3-204ENST00000562357 MYO15BQ96JP2 1530 aa36.4■■■■□ 3.42
CMTM3-204ENST00000562357 ZCCHC6Q5VYS8 1495 aaKnown RBP36.29■■■■□ 3.4
CMTM3-204ENST00000562357 DCAF1Q9Y4B6 1507 aa36.1■■■■□ 3.37
CMTM3-204ENST00000562357 PABPN1Q86U42 306 aaKnown RBP eCLIP35.91■■■■□ 3.34
CMTM3-204ENST00000562357 UNC13AQ9UPW8 1703 aa35.89■■■■□ 3.34
CMTM3-204ENST00000562357 BICRAQ9NZM4 1560 aa35.67■■■■□ 3.3
CMTM3-204ENST00000562357 DNAJC5BQ9UF47 199 aa35.55■■■■□ 3.28
CMTM3-204ENST00000562357 SCRIBQ14160 1630 aa35.54■■■■□ 3.28
CMTM3-204ENST00000562357 SHROOM4Q9ULL8 1493 aa35.41■■■■□ 3.26
CMTM3-204ENST00000562357 EIF4G1Q04637 1599 aaKnown RBP34.83■■■■□ 3.17
CMTM3-204ENST00000562357 CC2D2AQ9P2K1 1620 aa34.77■■■■□ 3.16
CMTM3-204ENST00000562357 CECR2Q9BXF3 1484 aa34.65■■■■□ 3.14
CMTM3-204ENST00000562357 SMARCA4P51532 1647 aa33.93■■■■□ 3.02
CMTM3-204ENST00000562357 BAZ1AQ9NRL2 1556 aaPredicted RBP33.9■■■■□ 3.02
CMTM3-204ENST00000562357 NCAPD3P42695 1498 aa33.9■■■■□ 3.02
CMTM3-204ENST00000562357 ATAD2BQ9ULI0 1458 aa33.86■■■■□ 3.01
CMTM3-204ENST00000562357 SMARCA2P51531 1590 aa33.85■■■■□ 3.01
CMTM3-204ENST00000562357 HMGXB3Q12766 1538 aa33.71■■■□□ 2.99
CMTM3-204ENST00000562357 BAZ1BQ9UIG0 1483 aaKnown RBP33.62■■■□□ 2.97
CMTM3-204ENST00000562357 MROH2BQ7Z745 1585 aa33.61■■■□□ 2.97
CMTM3-204ENST00000562357 PEG3Q9GZU2 1588 aa33.6■■■□□ 2.97
CMTM3-204ENST00000562357 ERCC6Q03468 1493 aa33.3■■■□□ 2.92
CMTM3-204ENST00000562357 WIZO95785 1651 aa33.21■■■□□ 2.91
CMTM3-204ENST00000562357 NESP48681 1621 aa33.16■■■□□ 2.9
CMTM3-204ENST00000562357 RSF1Q96T23 1441 aaPredicted RBP33.12■■■□□ 2.89
CMTM3-204ENST00000562357 LAMC3Q9Y6N6 1575 aa33.08■■■□□ 2.89
CMTM3-204ENST00000562357 CUX2O14529 1486 aa33.02■■■□□ 2.88
CMTM3-204ENST00000562357 PDS5BQ9NTI5 1447 aa32.93■■■□□ 2.86
CMTM3-204ENST00000562357 CADPSQ9ULU8 1353 aa32.92■■■□□ 2.86
CMTM3-204ENST00000562357 TOP2AP11388 1531 aaKnown RBP32.9■■■□□ 2.86
CMTM3-204ENST00000562357 KIF21AQ7Z4S6 1674 aa32.73■■■□□ 2.83
CMTM3-204ENST00000562357 THOC2Q8NI27 1593 aaKnown RBP32.73■■■□□ 2.83
CMTM3-204ENST00000562357 CFTRP13569 1480 aa32.62■■■□□ 2.81
CMTM3-204ENST00000562357 MRC2Q9UBG0 1479 aa32.58■■■□□ 2.81
CMTM3-204ENST00000562357 CEP164Q9UPV0 1460 aa32.57■■■□□ 2.8
CMTM3-204ENST00000562357 FANCD2Q9BXW9 1451 aa32.54■■■□□ 2.8
CMTM3-204ENST00000562357 DNAJC5Q9H3Z4 198 aa32.54■■■□□ 2.8
CMTM3-204ENST00000562357 CCDC88BA6NC98 1476 aa32.49■■■□□ 2.79
CMTM3-204ENST00000562357 WDR62O43379 1518 aa32.44■■■□□ 2.78
CMTM3-204ENST00000562357 PRDM2Q13029 1718 aa32.29■■■□□ 2.76
CMTM3-204ENST00000562357 URB2Q14146 1524 aaKnown RBP32.19■■■□□ 2.74
CMTM3-204ENST00000562357 SUPT5HO00267 1087 aaKnown RBP32.1■■■□□ 2.73
CMTM3-204ENST00000562357 ABCC8Q09428 1581 aa32.01■■■□□ 2.71
CMTM3-204ENST00000562357 TOPBP1Q92547 1522 aa31.96■■■□□ 2.71
CMTM3-204ENST00000562357 DNMBPQ6XZF7 1577 aa31.9■■■□□ 2.7
CMTM3-204ENST00000562357 IFT140Q96RY7 1462 aa31.9■■■□□ 2.7
CMTM3-204ENST00000562357 ZNF608Q9ULD9 1512 aaPredicted RBP31.7■■■□□ 2.67
CMTM3-204ENST00000562357 POLA1P09884 1462 aaPredicted RBP31.66■■■□□ 2.66
CMTM3-204ENST00000562357 OSCARQ8IYS5 282 aa31.61■■■□□ 2.65
CMTM3-204ENST00000562357 TARBP1Q13395 1621 aaKnown RBP31.59■■■□□ 2.65
CMTM3-204ENST00000562357 EIF4G3O43432 1585 aaKnown RBP31.59■■■□□ 2.65
CMTM3-204ENST00000562357 SOGA1O94964 1423 aa31.57■■■□□ 2.64
CMTM3-204ENST00000562357 CUX1P39880 1505 aa31.55■■■□□ 2.64
CMTM3-204ENST00000562357 FGD5Q6ZNL6 1462 aa31.55■■■□□ 2.64
CMTM3-204ENST00000562357 RAD54L2Q9Y4B4 1467 aa31.52■■■□□ 2.64
CMTM3-204ENST00000562357 AQRO60306 1485 aaKnown RBP eCLIP31.51■■■□□ 2.63
CMTM3-204ENST00000562357 TDRD9Q8NDG6 1382 aaKnown RBP31.42■■■□□ 2.62
CMTM3-204ENST00000562357 WDR97A6NE52 1622 aa31.4■■■□□ 2.62
CMTM3-204ENST00000562357 FBLN2P98095 1184 aa31.3■■■□□ 2.6
CMTM3-204ENST00000562357 WRNQ14191 1432 aaPredicted RBP eCLIP31.3■■■□□ 2.6
CMTM3-204ENST00000562357 GRIN2BQ13224 1484 aa31.25■■■□□ 2.59
CMTM3-204ENST00000562357 TRIM41Q8WV44 630 aa31.24■■■□□ 2.59
CMTM3-204ENST00000562357 SNAPC4Q5SXM2 1469 aa31.23■■■□□ 2.59
CMTM3-204ENST00000562357 ABCA10Q8WWZ4 1543 aa31.23■■■□□ 2.59
CMTM3-204ENST00000562357 CHD1O14646 1710 aa31.21■■■□□ 2.59
CMTM3-204ENST00000562357 MAGI1Q96QZ7 1491 aaPredicted RBP31.21■■■□□ 2.59
CMTM3-204ENST00000562357 TOP2BQ02880 1626 aa31.2■■■□□ 2.59
CMTM3-204ENST00000562357 BIVM-ERCC5R4GMW8 1640 aa31.19■■■□□ 2.58
CMTM3-204ENST00000562357 GAPVD1Q14C86 1478 aa31.19■■■□□ 2.58
CMTM3-204ENST00000562357 SYNJ1O43426 1573 aa31.16■■■□□ 2.58
CMTM3-204ENST00000562357 CHMP7Q8WUX9 453 aaPredicted RBP31.15■■■□□ 2.58
CMTM3-204ENST00000562357 ABCA5Q8WWZ7 1642 aa31.09■■■□□ 2.57
CMTM3-204ENST00000562357 SYNJ2O15056 1496 aa31.08■■■□□ 2.57
CMTM3-204ENST00000562357 PBRM1Q86U86 1689 aa31.08■■■□□ 2.57
CMTM3-204ENST00000562357 RIMBP3CA6NJZ7 1639 aa31.06■■■□□ 2.56
CMTM3-204ENST00000562357 RIMBP3BA6NNM3 1639 aa31.06■■■□□ 2.56
CMTM3-204ENST00000562357 RIMBP3Q9UFD9 1639 aa31.06■■■□□ 2.56
CMTM3-204ENST00000562357 ARHGEF11O15085 1522 aa31.04■■■□□ 2.56
CMTM3-204ENST00000562357 CLASP1Q7Z460 1538 aa30.89■■■□□ 2.54
CMTM3-204ENST00000562357 ERICH3Q5RHP9 1530 aa30.86■■■□□ 2.53
CMTM3-204ENST00000562357 ADAMTS12P58397 1594 aa30.85■■■□□ 2.53
CMTM3-204ENST00000562357 FHAD1B1AJZ9 1412 aa30.83■■■□□ 2.53
CMTM3-204ENST00000562357 CYB5RLQ6IPT4 315 aa30.83■■■□□ 2.53
CMTM3-204ENST00000562357 GRIN2AQ12879 1464 aa30.82■■■□□ 2.53
CMTM3-204ENST00000562357 ARAP1Q96P48 1450 aa30.76■■■□□ 2.51
CMTM3-204ENST00000562357 KIF27Q86VH2 1401 aa30.71■■■□□ 2.51
CMTM3-204ENST00000562357 NUP160Q12769 1436 aa30.68■■■□□ 2.5
CMTM3-204ENST00000562357 CEP170Q5SW79 1584 aa30.64■■■□□ 2.5
CMTM3-204ENST00000562357 IGF1RP08069 1367 aa30.54■■■□□ 2.48
CMTM3-204ENST00000562357 CUL7Q14999 1698 aa30.51■■■□□ 2.47
CMTM3-204ENST00000562357 SHROOM2Q13796 1616 aa30.44■■■□□ 2.46
CMTM3-204ENST00000562357 CARMIL1Q5VZK9 1371 aa30.41■■■□□ 2.46
CMTM3-204ENST00000562357 JPH4Q96JJ6 628 aa30.4■■■□□ 2.46
CMTM3-204ENST00000562357 RUSC2Q8N2Y8 1516 aa30.4■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms