Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 TTLL3-232ENST00000496526 5282 ntTSL 210.97□□□□□ -0.651e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-201ENST00000310252 1561 ntAPPRIS ALT2 TSL 1 (best)10.96□□□□□ -0.651e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-211ENST00000430390 1674 ntTSL 1 (best)10.9□□□□□ -0.661e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-214ENST00000431204 1041 ntTSL 510.52□□□□□ -0.731e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-202ENST00000383827 4834 ntTSL 1 (best) BASIC10.47□□□□□ -0.731e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-231ENST00000496246 507 ntTSL 410.23□□□□□ -0.771e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-221ENST00000455274 2848 ntTSL 2 BASIC10.15□□□□□ -0.791e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-225ENST00000473661 3811 ntTSL 59.53□□□□□ -0.881e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-228ENST00000483051 4176 ntTSL 59.43□□□□□ -0.91e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-226ENST00000474948 603 ntTSL 48.41□□□□□ -1.061e-6■□□□□ 10.9
SMNDC1O75940 TTLL3-220ENST00000452823 579 ntTSL 37.27□□□□□ -1.251e-6■□□□□ 10.9
SMNDC1O75940 EP400-208ENST00000611841 3129 ntTSL 512.39□□□□□ -0.438e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.23■■□□□ 1.479e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-203ENST00000594594 2251 ntTSL 524.09■■□□□ 1.459e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.689e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-220ENST00000609519 2113 ntTSL 219.03■□□□□ 0.649e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-202ENST00000593845 2749 ntTSL 218.5■□□□□ 0.559e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-216ENST00000599488 514 ntTSL 417.76■□□□□ 0.439e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-215ENST00000599137 608 ntTSL 416.48■□□□□ 0.239e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-207ENST00000595136 531 ntTSL 415.05■□□□□ -09e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-204ENST00000594893 1453 ntTSL 214.91□□□□□ -0.029e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-211ENST00000596213 929 ntTSL 313.17□□□□□ -0.39e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-205ENST00000595067 548 ntTSL 412.11□□□□□ -0.479e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-218ENST00000600247 583 ntTSL 411.27□□□□□ -0.619e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-213ENST00000597994 470 ntTSL 410.17□□□□□ -0.789e-9■□□□□ 10.9
SMNDC1O75940 AKAP8L-210ENST00000596195 553 ntTSL 47.5□□□□□ -1.219e-9■□□□□ 10.9
SMNDC1O75940 DDX17-204ENST00000431312 1853 ntTSL 1 (best)13.79□□□□□ -0.24e-17■□□□□ 10.9
SMNDC1O75940 CLCN7-214ENST00000569851 1014 ntTSL 514.91□□□□□ -0.024e-6■□□□□ 10.9
SMNDC1O75940 CLCN7-208ENST00000564968 652 ntTSL 414.48□□□□□ -0.094e-6■□□□□ 10.9
SMNDC1O75940 CLCN7-206ENST00000563822 851 ntTSL 513.17□□□□□ -0.34e-6■□□□□ 10.9
SMNDC1O75940 GUK1-229ENST00000485733 345 ntTSL 311.53□□□□□ -0.562e-7■□□□□ 10.9
SMNDC1O75940 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.611e-9■□□□□ 10.8
SMNDC1O75940 UBE3C-204ENST00000469336 655 ntTSL 29.26□□□□□ -0.931e-9■□□□□ 10.8
SMNDC1O75940 NUP214-223ENST00000530843 189 ntTSL 57.1□□□□□ -1.271e-9■□□□□ 10.8
SMNDC1O75940 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.641e-9■□□□□ 10.8
SMNDC1O75940 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.322e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.88■□□□□ 0.292e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.88■□□□□ 0.292e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.55■□□□□ 0.242e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.27■□□□□ 0.22e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.182e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.182e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.46■□□□□ 0.072e-6■□□□□ 10.8
SMNDC1O75940 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.12□□□□□ -0.312e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.98■■□□□ 1.435e-6■□□□□ 10.8
SMNDC1O75940 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.045e-6■□□□□ 10.8
SMNDC1O75940 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.965e-6■□□□□ 10.8
SMNDC1O75940 IMP4-208ENST00000460766 2379 ntTSL 1 (best)20.97■□□□□ 0.955e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.65■□□□□ 0.95e-6■□□□□ 10.8
SMNDC1O75940 RFNG-207ENST00000580953 2082 ntTSL 520.49■□□□□ 0.875e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-203ENST00000411549 1944 ntTSL 1 (best)20.1■□□□□ 0.815e-6■□□□□ 10.8
SMNDC1O75940 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.99■□□□□ 0.795e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.775e-6■□□□□ 10.8
SMNDC1O75940 LTB4R-205ENST00000556141 797 ntTSL 319.76■□□□□ 0.755e-6■□□□□ 10.8
SMNDC1O75940 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.22■□□□□ 0.675e-6■□□□□ 10.8
SMNDC1O75940 IMP4-210ENST00000462392 1793 ntTSL 318.91■□□□□ 0.625e-6■□□□□ 10.8
SMNDC1O75940 RFNG-204ENST00000578676 1078 ntTSL 318.86■□□□□ 0.615e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-207ENST00000440176 1328 ntTSL 218.66■□□□□ 0.585e-6■□□□□ 10.8
SMNDC1O75940 IMP4-213ENST00000473689 877 ntTSL 518.57■□□□□ 0.565e-6■□□□□ 10.8
SMNDC1O75940 CDK5RAP2-214ENST00000481266 970 ntTSL 518.36■□□□□ 0.535e-6■□□□□ 10.8
SMNDC1O75940 RFNG-208ENST00000582478 3107 ntTSL 1 (best)18.18■□□□□ 0.55e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-214ENST00000462009 825 ntTSL 317.77■□□□□ 0.445e-6■□□□□ 10.8
SMNDC1O75940 NRDC-211ENST00000491410 1020 ntTSL 217.57■□□□□ 0.45e-6■□□□□ 10.8
SMNDC1O75940 ZNF692-229ENST00000534456 587 ntTSL 417.29■□□□□ 0.365e-6■□□□□ 10.8
SMNDC1O75940 IMP4-206ENST00000456713 460 ntTSL 517.26■□□□□ 0.355e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.11■□□□□ 0.335e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.93■□□□□ 0.35e-6■□□□□ 10.8
SMNDC1O75940 FNBP4-213ENST00000534003 2515 ntTSL 516.89■□□□□ 0.295e-6■□□□□ 10.8
SMNDC1O75940 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.175e-6■□□□□ 10.8
SMNDC1O75940 RFNG-209ENST00000583784 2886 nt16.09■□□□□ 0.175e-6■□□□□ 10.8
SMNDC1O75940 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.165e-6■□□□□ 10.8
SMNDC1O75940 RFNG-205ENST00000580793 1755 ntTSL 1 (best)15.84■□□□□ 0.135e-6■□□□□ 10.8
SMNDC1O75940 ACAA1-205ENST00000421218 869 ntTSL 515.74■□□□□ 0.115e-6■□□□□ 10.8
SMNDC1O75940 IMP4-211ENST00000464432 939 ntTSL 515.6■□□□□ 0.095e-6■□□□□ 10.8
SMNDC1O75940 IMP4-215ENST00000477375 564 ntTSL 215.52■□□□□ 0.085e-6■□□□□ 10.8
SMNDC1O75940 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.045e-6■□□□□ 10.8
SMNDC1O75940 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.045e-6■□□□□ 10.8
SMNDC1O75940 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.27■□□□□ 0.045e-6■□□□□ 10.8
SMNDC1O75940 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.035e-6■□□□□ 10.8
SMNDC1O75940 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.035e-6■□□□□ 10.8
SMNDC1O75940 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.23■□□□□ 0.035e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-220ENST00000489483 5682 ntTSL 214.81□□□□□ -0.045e-6■□□□□ 10.8
SMNDC1O75940 HNRNPH3-211ENST00000491200 2308 ntTSL 1 (best)14.78□□□□□ -0.045e-6■□□□□ 10.8
SMNDC1O75940 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.055e-6■□□□□ 10.8
SMNDC1O75940 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)14.74□□□□□ -0.055e-6■□□□□ 10.8
SMNDC1O75940 IMP4-202ENST00000409649 822 ntTSL 214.74□□□□□ -0.055e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.72□□□□□ -0.055e-6■□□□□ 10.8
SMNDC1O75940 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC14.67□□□□□ -0.065e-6■□□□□ 10.8
SMNDC1O75940 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.075e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC14.55□□□□□ -0.085e-6■□□□□ 10.8
SMNDC1O75940 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC14.35□□□□□ -0.115e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.125e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.125e-6■□□□□ 10.8
SMNDC1O75940 RFNG-211ENST00000584515 994 ntTSL 214.05□□□□□ -0.165e-6■□□□□ 10.8
SMNDC1O75940 HNRNPH3-206ENST00000478698 1507 ntTSL 214.03□□□□□ -0.165e-6■□□□□ 10.8
SMNDC1O75940 HNRNPH3-210ENST00000490442 1521 ntTSL 214.03□□□□□ -0.165e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC13.94□□□□□ -0.185e-6■□□□□ 10.8
SMNDC1O75940 SLC26A6-201ENST00000307364 2586 ntTSL 1 (best)13.93□□□□□ -0.185e-6■□□□□ 10.8
SMNDC1O75940 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.195e-6■□□□□ 10.8
SMNDC1O75940 IMP4-216ENST00000490895 776 ntTSL 313.8□□□□□ -0.25e-6■□□□□ 10.8
Retrieved 100 of 11,362 protein–RNA pairs in 37.9 ms