RNA–Protein interactions for RNA: ENST00000348165.9

UBE3C-201, Transcript of ubiquitin protein ligase E3C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3C, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3C-201ENST00000348165 DCAF8L2P0C7V8 631 aa33.02■■■□□ 2.88
UBE3C-201ENST00000348165 NISCHQ9Y2I1 1504 aa31.39■■■□□ 2.62
UBE3C-201ENST00000348165 SUPT5HO00267 1087 aaKnown RBP31.19■■■□□ 2.58
UBE3C-201ENST00000348165 SHROOM4Q9ULL8 1493 aa30.72■■■□□ 2.51
UBE3C-201ENST00000348165 EHMT2Q96KQ7 1210 aa30.23■■■□□ 2.43
UBE3C-201ENST00000348165 FAM9AQ8IZU1 332 aaPredicted RBP29.46■■■□□ 2.31
UBE3C-201ENST00000348165 APLP2Q06481 763 aa29.38■■■□□ 2.29
UBE3C-201ENST00000348165 TTBK1Q5TCY1 1321 aaPredicted RBP29.14■■■□□ 2.25
UBE3C-201ENST00000348165 RANGAP1P46060 587 aaPredicted RBP28.94■■■□□ 2.22
UBE3C-201ENST00000348165 PCGF6Q9BYE7 350 aa28.85■■■□□ 2.21
UBE3C-201ENST00000348165 TRIM41Q8WV44 630 aa28.81■■■□□ 2.2
UBE3C-201ENST00000348165 PELP1Q8IZL8 1130 aaKnown RBP28.78■■■□□ 2.2
UBE3C-201ENST00000348165 ATP1B4Q9UN42 357 aaPredicted RBP28.6■■■□□ 2.17
UBE3C-201ENST00000348165 UBTFP17480 764 aaKnown RBP28.49■■■□□ 2.15
UBE3C-201ENST00000348165 MYT1Q01538 1121 aa28.45■■■□□ 2.14
UBE3C-201ENST00000348165 CCER1Q8TC90 406 aaPredicted RBP28.32■■■□□ 2.12
UBE3C-201ENST00000348165 PPARGC1BQ86YN6 1023 aaKnown RBP28.09■■■□□ 2.09
UBE3C-201ENST00000348165 ZEB1P37275 1124 aaPredicted RBP28.07■■■□□ 2.08
UBE3C-201ENST00000348165 CENPBP07199 599 aaPredicted RBP27.89■■■□□ 2.05
UBE3C-201ENST00000348165 LOC105371045A0A1W2PR82 267 aa27.66■■■□□ 2.02
UBE3C-201ENST00000348165 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.63■■■□□ 2.01
UBE3C-201ENST00000348165 ITGAEP38570 1179 aa27.63■■■□□ 2.01
UBE3C-201ENST00000348165 HNRNPUL2Q1KMD3 747 aaKnown RBP27.63■■■□□ 2.01
UBE3C-201ENST00000348165 ERICH6Q7L0X2 663 aa27.63■■■□□ 2.01
UBE3C-201ENST00000348165 YTHDC1Q96MU7 727 aaKnown RBP27.61■■■□□ 2.01
UBE3C-201ENST00000348165 CHIC1Q5VXU3 224 aa27.57■■■□□ 2
UBE3C-201ENST00000348165 TRIM26Q12899 539 aaPredicted RBP27.56■■■□□ 2
UBE3C-201ENST00000348165 MYT1LQ9UL68 1186 aa27.48■■□□□ 1.99
UBE3C-201ENST00000348165 PABPN1Q86U42 306 aaKnown RBP eCLIP27.4■■□□□ 1.98
UBE3C-201ENST00000348165 NEFLP07196 543 aa27.39■■□□□ 1.97
UBE3C-201ENST00000348165 ABCC9O60706 1549 aa27.36■■□□□ 1.97
UBE3C-201ENST00000348165 POLR3GLQ9BT43 218 aa27.26■■□□□ 1.95
UBE3C-201ENST00000348165 HRCP23327 699 aa27.14■■□□□ 1.94
UBE3C-201ENST00000348165 CNGB1Q14028 1251 aaPredicted RBP27.08■■□□□ 1.93
UBE3C-201ENST00000348165 FAM50AQ14320 339 aaKnown RBP26.87■■□□□ 1.89
UBE3C-201ENST00000348165 SLC4A1APQ9BWU0 796 aaKnown RBP26.74■■□□□ 1.87
UBE3C-201ENST00000348165 FBLN2P98095 1184 aa26.7■■□□□ 1.86
UBE3C-201ENST00000348165 TRIM52Q96A61 297 aa26.7■■□□□ 1.86
UBE3C-201ENST00000348165 NEUROD1Q13562 356 aa26.59■■□□□ 1.85
UBE3C-201ENST00000348165 DIEXFQ68CQ4 756 aaKnown RBP26.54■■□□□ 1.84
UBE3C-201ENST00000348165 DAXXQ9UER7 740 aaPredicted RBP26.5■■□□□ 1.83
UBE3C-201ENST00000348165 P3H3Q8IVL6 736 aa26.46■■□□□ 1.83
UBE3C-201ENST00000348165 ARID3CA6NKF2 412 aa26.43■■□□□ 1.82
UBE3C-201ENST00000348165 ZNF326Q5BKZ1 582 aaKnown RBP26.42■■□□□ 1.82
UBE3C-201ENST00000348165 CSRNP3Q8WYN3 585 aa26.37■■□□□ 1.81
UBE3C-201ENST00000348165 CLSPNQ9HAW4 1339 aa26.18■■□□□ 1.78
UBE3C-201ENST00000348165 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
UBE3C-201ENST00000348165 ZNF777Q9ULD5 760 aaPredicted RBP26.14■■□□□ 1.78
UBE3C-201ENST00000348165 ANP32CO43423 234 aa26.09■■□□□ 1.77
UBE3C-201ENST00000348165 BCANQ96GW7 911 aa26.01■■□□□ 1.75
UBE3C-201ENST00000348165 ZNF316A6NFI3 1004 aaPredicted RBP25.97■■□□□ 1.75
UBE3C-201ENST00000348165 CDK11AQ9UQ88 783 aaPredicted RBP25.96■■□□□ 1.75
UBE3C-201ENST00000348165 RTL5Q5HYW3 569 aaPredicted RBP25.93■■□□□ 1.74
UBE3C-201ENST00000348165 ZCCHC6Q5VYS8 1495 aaKnown RBP25.9■■□□□ 1.74
UBE3C-201ENST00000348165 GTF3C3Q9Y5Q9 886 aa25.89■■□□□ 1.73
UBE3C-201ENST00000348165 SLC24A1O60721 1099 aa25.8■■□□□ 1.72
UBE3C-201ENST00000348165 BCL11AQ9H165 835 aa25.75■■□□□ 1.71
UBE3C-201ENST00000348165 CHGAP10645 457 aaKnown RBP25.71■■□□□ 1.71
UBE3C-201ENST00000348165 ZBTB47Q9UFB7 747 aaPredicted RBP25.69■■□□□ 1.7
UBE3C-201ENST00000348165 ESF1Q9H501 851 aaKnown RBP25.68■■□□□ 1.7
UBE3C-201ENST00000348165 CANXP27824 592 aaKnown RBP25.67■■□□□ 1.7
UBE3C-201ENST00000348165 NPM1P06748 294 aaKnown RBP eCLIP25.67■■□□□ 1.7
UBE3C-201ENST00000348165 NEFMP07197 916 aa25.67■■□□□ 1.7
UBE3C-201ENST00000348165 CHIC2Q9UKJ5 165 aa25.67■■□□□ 1.7
UBE3C-201ENST00000348165 PLPPR3Q6T4P5 718 aa25.63■■□□□ 1.69
UBE3C-201ENST00000348165 TONSLQ96HA7 1378 aa25.61■■□□□ 1.69
UBE3C-201ENST00000348165 STAG3Q9UJ98 1225 aa25.59■■□□□ 1.69
UBE3C-201ENST00000348165 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.55■■□□□ 1.681e-6■■□□□ 13.4
UBE3C-201ENST00000348165 ACIN1Q9UKV3 1341 aaKnown RBP25.52■■□□□ 1.68
UBE3C-201ENST00000348165 CHMP7Q8WUX9 453 aaPredicted RBP25.51■■□□□ 1.68
UBE3C-201ENST00000348165 DDX10Q13206 875 aaKnown RBP25.48■■□□□ 1.67
UBE3C-201ENST00000348165 TSPY4P0CV99 314 aa25.44■■□□□ 1.66
UBE3C-201ENST00000348165 TSPY10P0CW01 314 aa25.44■■□□□ 1.66
UBE3C-201ENST00000348165 MTUS2Q5JR59 1369 aa25.42■■□□□ 1.66
UBE3C-201ENST00000348165 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
UBE3C-201ENST00000348165 FAM9BQ8IZU0 186 aa25.37■■□□□ 1.65
UBE3C-201ENST00000348165 KDM2AQ9Y2K7 1162 aa25.36■■□□□ 1.65
UBE3C-201ENST00000348165 SALL2Q9Y467 1007 aaPredicted RBP25.35■■□□□ 1.65
UBE3C-201ENST00000348165 DCAF1Q9Y4B6 1507 aa25.35■■□□□ 1.65
UBE3C-201ENST00000348165 HNRNPUQ00839 825 aaKnown RBP eCLIP25.34■■□□□ 1.65
UBE3C-201ENST00000348165 CLIP1P30622 1438 aa25.33■■□□□ 1.64
UBE3C-201ENST00000348165 RSF1Q96T23 1441 aaPredicted RBP25.29■■□□□ 1.64
UBE3C-201ENST00000348165 RB1CC1Q8TDY2 1594 aa25.28■■□□□ 1.64
UBE3C-201ENST00000348165 KCNH8Q96L42 1107 aa25.27■■□□□ 1.64
UBE3C-201ENST00000348165 RRP7BPQ9NSQ0 103 aa25.26■■□□□ 1.63
UBE3C-201ENST00000348165 FKBP8Q14318 412 aa25.24■■□□□ 1.63
UBE3C-201ENST00000348165 HIRIP3Q9BW71 556 aaPredicted RBP25.24■■□□□ 1.63
UBE3C-201ENST00000348165 NPM2Q86SE8 214 aaKnown RBP25.21■■□□□ 1.63
UBE3C-201ENST00000348165 TMC1Q8TDI8 760 aa25.21■■□□□ 1.63
UBE3C-201ENST00000348165 SENP3Q9H4L4 574 aaPredicted RBP25.19■■□□□ 1.62
UBE3C-201ENST00000348165 PLEKHD1A6NEE1 506 aa25.14■■□□□ 1.62
UBE3C-201ENST00000348165 ANP32AP39687 249 aaKnown RBP25.14■■□□□ 1.62
UBE3C-201ENST00000348165 EIF5BO60841 1220 aaKnown RBP25.14■■□□□ 1.61
UBE3C-201ENST00000348165 WRNQ14191 1432 aaPredicted RBP eCLIP25.11■■□□□ 1.61
UBE3C-201ENST00000348165 MRS2Q9HD23 443 aa25.1■■□□□ 1.61
UBE3C-201ENST00000348165 BAZ1BQ9UIG0 1483 aaKnown RBP25.08■■□□□ 1.61
UBE3C-201ENST00000348165 CEP162Q5TB80 1403 aa25.06■■□□□ 1.6
UBE3C-201ENST00000348165 GOLGA3Q08378 1498 aa25.04■■□□□ 1.6
UBE3C-201ENST00000348165 WDR43Q15061 677 aaKnown RBP eCLIP25.04■■□□□ 1.6
UBE3C-201ENST00000348165 RGL3Q3MIN7 710 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms