Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA2Q9Y261 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 AC100797.4-201ENST00000631653 1827 ntBASIC20.49■□□□□ 0.87
FOXA2Q9Y261 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA2Q9Y261 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.48■□□□□ 0.87
FOXA2Q9Y261 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
FOXA2Q9Y261 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.46■□□□□ 0.87
FOXA2Q9Y261 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA2Q9Y261 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.45■□□□□ 0.86
FOXA2Q9Y261 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
FOXA2Q9Y261 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA2Q9Y261 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.43■□□□□ 0.86
FOXA2Q9Y261 AP002414.2-202ENST00000590929 1450 ntBASIC20.43■□□□□ 0.86
FOXA2Q9Y261 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA2Q9Y261 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
FOXA2Q9Y261 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA2Q9Y261 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
FOXA2Q9Y261 DUX4L29-201ENST00000425409 679 ntBASIC20.4■□□□□ 0.86
FOXA2Q9Y261 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXA2Q9Y261 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA2Q9Y261 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA2Q9Y261 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXA2Q9Y261 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA2Q9Y261 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.38■□□□□ 0.85
FOXA2Q9Y261 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.37■□□□□ 0.85
FOXA2Q9Y261 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA2Q9Y261 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA2Q9Y261 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA2Q9Y261 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 AC021231.2-201ENST00000594613 730 ntBASIC20.34■□□□□ 0.85
FOXA2Q9Y261 AC135983.2-203ENST00000454486 1613 ntBASIC20.34■□□□□ 0.85
FOXA2Q9Y261 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA2Q9Y261 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA2Q9Y261 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXA2Q9Y261 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.32■□□□□ 0.84
FOXA2Q9Y261 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
FOXA2Q9Y261 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.31■□□□□ 0.84
FOXA2Q9Y261 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms