RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 NISCHQ9Y2I1 1504 aa55■■■■■ 6.39
RUNDC3A-201ENST00000225441 CCDC180Q9P1Z9 1646 aa48.18■■■■■ 5.3
RUNDC3A-201ENST00000225441 ZCCHC6Q5VYS8 1495 aaKnown RBP46.14■■■■■ 4.98
RUNDC3A-201ENST00000225441 ABCC9O60706 1549 aa45.85■■■■■ 4.93
RUNDC3A-201ENST00000225441 DCAF1Q9Y4B6 1507 aa45.51■■■■■ 4.88
RUNDC3A-201ENST00000225441 DCAF8L2P0C7V8 631 aa45.45■■■■■ 4.87
RUNDC3A-201ENST00000225441 MYO15BQ96JP2 1530 aa45.13■■■■■ 4.81
RUNDC3A-201ENST00000225441 NACADO15069 1562 aa44.95■■■■■ 4.79
RUNDC3A-201ENST00000225441 RB1CC1Q8TDY2 1594 aa44.66■■■■■ 4.74
RUNDC3A-201ENST00000225441 SHROOM4Q9ULL8 1493 aa44.5■■■■■ 4.71
RUNDC3A-201ENST00000225441 SCRIBQ14160 1630 aa44.2■■■■■ 4.67
RUNDC3A-201ENST00000225441 UNC13AQ9UPW8 1703 aa43.7■■■■■ 4.59
RUNDC3A-201ENST00000225441 BICRAQ9NZM4 1560 aa43.3■■■■■ 4.52
RUNDC3A-201ENST00000225441 PABPN1Q86U42 306 aaKnown RBP eCLIP43.12■■■■■ 4.49
RUNDC3A-201ENST00000225441 CECR2Q9BXF3 1484 aa42.74■■■■■ 4.43
RUNDC3A-201ENST00000225441 SUPT5HO00267 1087 aaKnown RBP42.62■■■■■ 4.41
RUNDC3A-201ENST00000225441 BAZ1AQ9NRL2 1556 aaPredicted RBP42.51■■■■■ 4.4
RUNDC3A-201ENST00000225441 RSF1Q96T23 1441 aaPredicted RBP42.5■■■■■ 4.39
RUNDC3A-201ENST00000225441 MROH2BQ7Z745 1585 aa42.46■■■■■ 4.39
RUNDC3A-201ENST00000225441 SMARCA4P51532 1647 aa42.37■■■■■ 4.37
RUNDC3A-201ENST00000225441 WIZO95785 1651 aa42.08■■■■■ 4.33
RUNDC3A-201ENST00000225441 EIF4G1Q04637 1599 aaKnown RBP42.03■■■■■ 4.32
RUNDC3A-201ENST00000225441 PEG3Q9GZU2 1588 aa41.89■■■■■ 4.3
RUNDC3A-201ENST00000225441 ATAD2BQ9ULI0 1458 aa41.76■■■■■ 4.28
RUNDC3A-201ENST00000225441 SMARCA2P51531 1590 aa41.74■■■■■ 4.27
RUNDC3A-201ENST00000225441 CHIC1Q5VXU3 224 aa41.74■■■■■ 4.27
RUNDC3A-201ENST00000225441 TOP2AP11388 1531 aaKnown RBP41.68■■■■■ 4.26
RUNDC3A-201ENST00000225441 BAZ1BQ9UIG0 1483 aaKnown RBP41.5■■■■■ 4.23
RUNDC3A-201ENST00000225441 CC2D2AQ9P2K1 1620 aa41.5■■■■■ 4.23
RUNDC3A-201ENST00000225441 NCAPD3P42695 1498 aa41.48■■■■■ 4.23
RUNDC3A-201ENST00000225441 HMGXB3Q12766 1538 aa41.41■■■■■ 4.22
RUNDC3A-201ENST00000225441 CCDC88BA6NC98 1476 aa41.21■■■■■ 4.19
RUNDC3A-201ENST00000225441 DNAJC5BQ9UF47 199 aa40.74■■■■■ 4.11
RUNDC3A-201ENST00000225441 CFTRP13569 1480 aa40.44■■■■■ 4.06
RUNDC3A-201ENST00000225441 HRCP23327 699 aa40.41■■■■■ 4.06
RUNDC3A-201ENST00000225441 CADPSQ9ULU8 1353 aa40.37■■■■■ 4.05
RUNDC3A-201ENST00000225441 PRDM2Q13029 1718 aa40.22■■■■■ 4.03
RUNDC3A-201ENST00000225441 ABCC8Q09428 1581 aa40.2■■■■■ 4.03
RUNDC3A-201ENST00000225441 LOC105371045A0A1W2PR82 267 aa40.14■■■■■ 4.02
RUNDC3A-201ENST00000225441 LAMC3Q9Y6N6 1575 aa40.14■■■■■ 4.02
RUNDC3A-201ENST00000225441 NESP48681 1621 aa40.13■■■■■ 4.01
RUNDC3A-201ENST00000225441 TRIM41Q8WV44 630 aa40.12■■■■■ 4.01
RUNDC3A-201ENST00000225441 PCGF6Q9BYE7 350 aa40.11■■■■■ 4.01
RUNDC3A-201ENST00000225441 WRNQ14191 1432 aaPredicted RBP eCLIP40.02■■■■■ 4
RUNDC3A-201ENST00000225441 FANCD2Q9BXW9 1451 aa39.93■■■■□ 3.98
RUNDC3A-201ENST00000225441 SYNJ1O43426 1573 aa39.87■■■■□ 3.97
RUNDC3A-201ENST00000225441 PDS5BQ9NTI5 1447 aa39.82■■■■□ 3.97
RUNDC3A-201ENST00000225441 TRIM26Q12899 539 aaPredicted RBP39.79■■■■□ 3.96
RUNDC3A-201ENST00000225441 TOP2BQ02880 1626 aa39.75■■■■□ 3.95
RUNDC3A-201ENST00000225441 CUX1P39880 1505 aa39.73■■■■□ 3.95
RUNDC3A-201ENST00000225441 BIVM-ERCC5R4GMW8 1640 aa39.73■■■■□ 3.95
RUNDC3A-201ENST00000225441 CEP164Q9UPV0 1460 aa39.72■■■■□ 3.95
RUNDC3A-201ENST00000225441 KIF21AQ7Z4S6 1674 aa39.65■■■■□ 3.94
RUNDC3A-201ENST00000225441 DNMBPQ6XZF7 1577 aa39.52■■■■□ 3.92
RUNDC3A-201ENST00000225441 TOPBP1Q92547 1522 aa39.46■■■■□ 3.91
RUNDC3A-201ENST00000225441 URB2Q14146 1524 aaKnown RBP39.46■■■■□ 3.91
RUNDC3A-201ENST00000225441 SOGA1O94964 1423 aa39.37■■■■□ 3.89
RUNDC3A-201ENST00000225441 FGD5Q6ZNL6 1462 aa39.36■■■■□ 3.89
RUNDC3A-201ENST00000225441 ERCC6Q03468 1493 aa39.36■■■■□ 3.89
RUNDC3A-201ENST00000225441 MRC2Q9UBG0 1479 aa39.35■■■■□ 3.89
RUNDC3A-201ENST00000225441 FAM9AQ8IZU1 332 aaPredicted RBP39.35■■■■□ 3.89
RUNDC3A-201ENST00000225441 EEA1Q15075 1411 aa39.26■■■■□ 3.88
RUNDC3A-201ENST00000225441 POLA1P09884 1462 aaPredicted RBP39.24■■■■□ 3.87
RUNDC3A-201ENST00000225441 RUSC2Q8N2Y8 1516 aa39.23■■■■□ 3.87
RUNDC3A-201ENST00000225441 ZEB1P37275 1124 aaPredicted RBP39.19■■■■□ 3.86
RUNDC3A-201ENST00000225441 WDR62O43379 1518 aa39.16■■■■□ 3.86
RUNDC3A-201ENST00000225441 THOC2Q8NI27 1593 aaKnown RBP39.14■■■■□ 3.86
RUNDC3A-201ENST00000225441 RAD54L2Q9Y4B4 1467 aa39.08■■■■□ 3.85
RUNDC3A-201ENST00000225441 KIF27Q86VH2 1401 aa39.05■■■■□ 3.84
RUNDC3A-201ENST00000225441 CSRNP3Q8WYN3 585 aa39.03■■■■□ 3.84
RUNDC3A-201ENST00000225441 CUX2O14529 1486 aa39.02■■■■□ 3.84
RUNDC3A-201ENST00000225441 PPARGC1BQ86YN6 1023 aaKnown RBP39.02■■■■□ 3.84
RUNDC3A-201ENST00000225441 ABCA10Q8WWZ4 1543 aa39.02■■■■□ 3.84
RUNDC3A-201ENST00000225441 WDR97A6NE52 1622 aa38.94■■■■□ 3.82
RUNDC3A-201ENST00000225441 TARBP1Q13395 1621 aaKnown RBP38.91■■■■□ 3.82
RUNDC3A-201ENST00000225441 IFT140Q96RY7 1462 aa38.81■■■■□ 3.8
RUNDC3A-201ENST00000225441 KIF21BO75037 1637 aa38.77■■■■□ 3.8
RUNDC3A-201ENST00000225441 EHMT2Q96KQ7 1210 aa38.77■■■■□ 3.8
RUNDC3A-201ENST00000225441 ABCA5Q8WWZ7 1642 aa38.74■■■■□ 3.79
RUNDC3A-201ENST00000225441 TDRD9Q8NDG6 1382 aaKnown RBP38.73■■■■□ 3.79
RUNDC3A-201ENST00000225441 IGF1RP08069 1367 aa38.72■■■■□ 3.79
RUNDC3A-201ENST00000225441 PRXQ9BXM0 1461 aa38.69■■■■□ 3.78
RUNDC3A-201ENST00000225441 GOLGA3Q08378 1498 aa38.69■■■■□ 3.78
RUNDC3A-201ENST00000225441 GAPVD1Q14C86 1478 aa38.66■■■■□ 3.78
RUNDC3A-201ENST00000225441 ERICH3Q5RHP9 1530 aa38.59■■■■□ 3.77
RUNDC3A-201ENST00000225441 RAPGEF2Q9Y4G8 1499 aa38.59■■■■□ 3.77
RUNDC3A-201ENST00000225441 ZNF608Q9ULD9 1512 aaPredicted RBP38.58■■■■□ 3.77
RUNDC3A-201ENST00000225441 TNIKQ9UKE5 1360 aa38.56■■■■□ 3.76
RUNDC3A-201ENST00000225441 AQRO60306 1485 aaKnown RBP eCLIP38.55■■■■□ 3.76
RUNDC3A-201ENST00000225441 CARMIL1Q5VZK9 1371 aa38.53■■■■□ 3.76
RUNDC3A-201ENST00000225441 CUL7Q14999 1698 aa38.5■■■■□ 3.75
RUNDC3A-201ENST00000225441 PBRM1Q86U86 1689 aa38.48■■■■□ 3.75
RUNDC3A-201ENST00000225441 UBTFP17480 764 aaKnown RBP38.47■■■■□ 3.75
RUNDC3A-201ENST00000225441 EIF4G3O43432 1585 aaKnown RBP38.47■■■■□ 3.75
RUNDC3A-201ENST00000225441 GRIN2BQ13224 1484 aa38.44■■■■□ 3.74
RUNDC3A-201ENST00000225441 CEP162Q5TB80 1403 aa38.41■■■■□ 3.74
RUNDC3A-201ENST00000225441 ADAMTS12P58397 1594 aa38.27■■■■□ 3.72
RUNDC3A-201ENST00000225441 FHAD1B1AJZ9 1412 aa38.25■■■■□ 3.71
RUNDC3A-201ENST00000225441 SNAPC4Q5SXM2 1469 aa38.22■■■■□ 3.71
RUNDC3A-201ENST00000225441 MAGI1Q96QZ7 1491 aaPredicted RBP38.16■■■■□ 3.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms