Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 LAMTOR4-211ENST00000490633 401 ntTSL 317.59■□□□□ 0.415e-13■■■■■ 33.2
DDX55Q8NHQ9 LAMTOR4-208ENST00000474831 564 ntTSL 316.84■□□□□ 0.294e-8■■■■■ 33.2
DDX55Q8NHQ9 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC16.65■□□□□ 0.263e-10■■■■■ 33.2
DDX55Q8NHQ9 LAMTOR4-207ENST00000474141 519 ntTSL 2 BASIC14.1□□□□□ -0.154e-8■■■■■ 33.2
DDX55Q8NHQ9 LAMTOR4-203ENST00000460732 616 ntTSL 3 BASIC12.85□□□□□ -0.354e-8■■■■■ 33.2
DDX55Q8NHQ9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.52■■□□□ 1.364e-13■■■■■ 33.2
DDX55Q8NHQ9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.674e-13■■■■■ 33.2
DDX55Q8NHQ9 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.034e-7■■■■■ 33.1
DDX55Q8NHQ9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.482e-6■■■■■ 33.1
DDX55Q8NHQ9 TSTA3-214ENST00000531473 2220 ntTSL 1 (best)22.55■■□□□ 1.22e-6■■■■■ 33.1
DDX55Q8NHQ9 TSTA3-207ENST00000527677 541 ntTSL 219.81■□□□□ 0.762e-6■■■■■ 33.1
DDX55Q8NHQ9 TSTA3-208ENST00000528920 964 ntTSL 517.66■□□□□ 0.422e-6■■■■■ 33.1
DDX55Q8NHQ9 TSTA3-202ENST00000524719 762 ntTSL 317.16■□□□□ 0.342e-6■■■■■ 33.1
DDX55Q8NHQ9 TSTA3-210ENST00000529064 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.062e-6■■■■■ 33.1
DDX55Q8NHQ9 QSOX1-204ENST00000443059 893 ntTSL 218.16■□□□□ 0.53e-12■■■■■ 33.1
DDX55Q8NHQ9 CFAP20-203ENST00000562622 1605 ntTSL 516.69■□□□□ 0.261e-18■■■■■ 33
DDX55Q8NHQ9 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.041e-18■■■■■ 33
DDX55Q8NHQ9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.233e-7■■■■■ 32.9
DDX55Q8NHQ9 R3HDM2-215ENST00000634871 4092 ntTSL 5 BASIC14.88□□□□□ -0.033e-7■■■■■ 32.9
DDX55Q8NHQ9 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.083e-7■■■■■ 32.9
DDX55Q8NHQ9 AC137834.1-201ENST00000548184 2107 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.343e-7■■■■■ 32.9
DDX55Q8NHQ9 R3HDM2-203ENST00000393811 3778 ntTSL 1 (best)12.41□□□□□ -0.423e-7■■■■■ 32.9
DDX55Q8NHQ9 R3HDM2-202ENST00000358907 3974 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.633e-7■■■■■ 32.9
DDX55Q8NHQ9 R3HDM2-207ENST00000441731 4076 ntTSL 5 BASIC9.97□□□□□ -0.813e-7■■■■■ 32.9
DDX55Q8NHQ9 MIR611-201ENST00000384869 67 ntBASIC16■□□□□ 0.153e-6■■■■■ 32.9
DDX55Q8NHQ9 ACAP3-212ENST00000492936 5319 ntTSL 1 (best)19.36■□□□□ 0.691e-11■■■■■ 32.8
DDX55Q8NHQ9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.661e-11■■■■■ 32.8
DDX55Q8NHQ9 MMS19-212ENST00000444411 640 ntTSL 218.71■□□□□ 0.592e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-218ENST00000485400 1513 ntTSL 218.03■□□□□ 0.482e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-219ENST00000495415 1879 ntTSL 515.48■□□□□ 0.072e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-207ENST00000434538 2164 ntTSL 212.5□□□□□ -0.412e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-201ENST00000327238 3165 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.412e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-204ENST00000415383 3401 ntTSL 1 (best)12.27□□□□□ -0.442e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-209ENST00000438925 3797 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.512e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-203ENST00000370782 3532 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.552e-7■■■■■ 32.7
DDX55Q8NHQ9 MMS19-202ENST00000355839 3555 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.712e-7■■■■■ 32.7
DDX55Q8NHQ9 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.491e-6■■■■■ 32.7
DDX55Q8NHQ9 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.35■□□□□ 0.371e-6■■■■■ 32.7
DDX55Q8NHQ9 TMEM258-203ENST00000535297 395 ntTSL 216.88■□□□□ 0.291e-6■■■■■ 32.7
DDX55Q8NHQ9 TMEM258-208ENST00000545210 579 ntTSL 314.63□□□□□ -0.071e-6■■■■■ 32.7
DDX55Q8NHQ9 TMEM258-201ENST00000257262 468 ntTSL 310.34□□□□□ -0.751e-6■■■■■ 32.7
DDX55Q8NHQ9 TMEM258-206ENST00000541893 517 ntTSL 56.43□□□□□ -1.381e-6■■■■■ 32.7
DDX55Q8NHQ9 TMEM258-202ENST00000535042 921 ntTSL 315.73■□□□□ 0.118e-11■■■■■ 32.5
DDX55Q8NHQ9 RPS10P28-201ENST00000480396 498 ntBASIC9.26□□□□□ -0.936e-8■■■■■ 32.5
DDX55Q8NHQ9 IGSF1-202ENST00000370900 1786 ntTSL 2 BASIC13.96□□□□□ -0.189e-7■■■■■ 32.5
DDX55Q8NHQ9 IGSF1-203ENST00000370901 1820 ntTSL 1 (best) BASIC12.57□□□□□ -0.49e-7■■■■■ 32.5
DDX55Q8NHQ9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.634e-7■■■■■ 32.3
DDX55Q8NHQ9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 33e-7■■■■■ 32.1
DDX55Q8NHQ9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.826e-7■■■■■ 32.1
DDX55Q8NHQ9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.816e-7■■■■■ 32.1
DDX55Q8NHQ9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC26.35■■□□□ 1.816e-7■■■■■ 32.1
DDX55Q8NHQ9 ARRDC1-208ENST00000475658 854 ntTSL 326.04■■□□□ 1.763e-7■■■■■ 32.1
DDX55Q8NHQ9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC25.79■■□□□ 1.726e-7■■■■■ 32.1
DDX55Q8NHQ9 FBXL15-205ENST00000440407 871 ntTSL 525.07■■□□□ 1.68e-8■■■■■ 32.1
DDX55Q8NHQ9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.466e-7■■■■■ 32.1
DDX55Q8NHQ9 FBXL15-203ENST00000425536 804 ntTSL 223.89■■□□□ 1.418e-8■■■■■ 32.1
DDX55Q8NHQ9 FBXL15-204ENST00000432590 874 ntTSL 223.88■■□□□ 1.418e-8■■■■■ 32.1
DDX55Q8NHQ9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC23.79■■□□□ 1.43e-7■■■■■ 32.1
DDX55Q8NHQ9 CTU2-208ENST00000566637 1619 ntTSL 223.55■■□□□ 1.366e-7■■■■■ 32.1
DDX55Q8NHQ9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.336e-7■■■■■ 32.1
DDX55Q8NHQ9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC22.88■■□□□ 1.256e-7■■■■■ 32.1
DDX55Q8NHQ9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.256e-7■■■■■ 32.1
DDX55Q8NHQ9 NAPA-215ENST00000597271 1467 ntTSL 222.6■■□□□ 1.216e-7■■■■■ 32.1
DDX55Q8NHQ9 CTU2-204ENST00000564105 1586 ntTSL 1 (best)22.49■■□□□ 1.196e-7■■■■■ 32.1
DDX55Q8NHQ9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.16e-7■■■■■ 32.1
DDX55Q8NHQ9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.086e-7■■■■■ 32.1
DDX55Q8NHQ9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 18e-8■■■■■ 32.1
DDX55Q8NHQ9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.986e-7■■■■■ 32.1
DDX55Q8NHQ9 NAPA-205ENST00000594001 1417 ntTSL 220.67■□□□□ 0.96e-7■■■■■ 32.1
DDX55Q8NHQ9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.01■□□□□ 0.796e-7■■■■■ 32.1
DDX55Q8NHQ9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.776e-7■■■■■ 32.1
DDX55Q8NHQ9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.748e-8■■■■■ 32.1
DDX55Q8NHQ9 FBXL15-206ENST00000457067 776 ntTSL 519.44■□□□□ 0.76e-7■■■■■ 32.1
DDX55Q8NHQ9 CAPG-210ENST00000453973 452 ntTSL 318.47■□□□□ 0.556e-7■■■■■ 32.1
DDX55Q8NHQ9 CTU2-209ENST00000567316 452 ntTSL 318.13■□□□□ 0.496e-7■■■■■ 32.1
DDX55Q8NHQ9 CAPG-212ENST00000471064 486 ntTSL 218.13■□□□□ 0.496e-7■■■■■ 32.1
DDX55Q8NHQ9 CAPG-214ENST00000483659 767 ntTSL 318.1■□□□□ 0.496e-7■■■■■ 32.1
DDX55Q8NHQ9 CTU2-203ENST00000562011 324 ntTSL 217.98■□□□□ 0.476e-7■■■■■ 32.1
DDX55Q8NHQ9 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.446e-7■■■■■ 32.1
DDX55Q8NHQ9 CTU2-205ENST00000564584 896 ntTSL 317.12■□□□□ 0.336e-7■■■■■ 32.1
DDX55Q8NHQ9 PPIE-207ENST00000470018 947 ntTSL 516.71■□□□□ 0.276e-7■■■■■ 32.1
DDX55Q8NHQ9 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.216e-7■■■■■ 32.1
DDX55Q8NHQ9 AC073548.1-201ENST00000624088 1882 ntBASIC14.8□□□□□ -0.046e-7■■■■■ 32.1
DDX55Q8NHQ9 CAPG-204ENST00000409724 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.046e-7■■■■■ 32.1
DDX55Q8NHQ9 ARRDC1-210ENST00000491911 3185 ntTSL 214.31□□□□□ -0.123e-7■■■■■ 32.1
DDX55Q8NHQ9 AL590627.2-202ENST00000636318 138 ntTSL 514.21□□□□□ -0.133e-7■■■■■ 32.1
DDX55Q8NHQ9 NAPA-217ENST00000597778 3898 ntTSL 212.25□□□□□ -0.456e-7■■■■■ 32.1
DDX55Q8NHQ9 NAPA-207ENST00000594217 554 ntTSL 512.06□□□□□ -0.486e-7■■■■■ 32.1
DDX55Q8NHQ9 PPIE-211ENST00000480169 891 ntTSL 59.19□□□□□ -0.946e-7■■■■■ 32.1
DDX55Q8NHQ9 PPIE-209ENST00000474804 793 ntTSL 59.17□□□□□ -0.946e-7■■■■■ 32.1
DDX55Q8NHQ9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.451e-12■■■■■ 32.1
DDX55Q8NHQ9 MANF-202ENST00000470900 1509 ntTSL 230.19■■■□□ 2.421e-12■■■■■ 32.1
DDX55Q8NHQ9 MANF-201ENST00000446668 846 ntTSL 325.6■■□□□ 1.691e-12■■■■■ 32.1
DDX55Q8NHQ9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.922e-6■■■■■ 32
DDX55Q8NHQ9 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.092e-6■■■■■ 32
DDX55Q8NHQ9 SLC35C2-209ENST00000484188 854 ntTSL 527.54■■■□□ 21e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.871e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.681e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-203ENST00000571291 927 ntTSL 323.52■■□□□ 1.361e-6■■■■■ 32
DDX55Q8NHQ9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.251e-6■■■■■ 32
Retrieved 100 of 15,504 protein–RNA pairs in 679.3 ms