RNA–Protein interactions for RNA: ENST00000257262.12

TMEM258-201, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 468 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-201ENST00000257262 AEBP2Q6ZN18 517 aaPredicted RBP21.71■■□□□ 1.07
TMEM258-201ENST00000257262 CHIC1Q5VXU3 224 aa20.93■□□□□ 0.94
TMEM258-201ENST00000257262 NISCHQ9Y2I1 1504 aa20.68■□□□□ 0.9
TMEM258-201ENST00000257262 SENP3Q9H4L4 574 aaPredicted RBP18.6■□□□□ 0.57
TMEM258-201ENST00000257262 CCDC180Q9P1Z9 1646 aa18.39■□□□□ 0.53
TMEM258-201ENST00000257262 PHF23Q9BUL5 403 aaPredicted RBP18.33■□□□□ 0.52
TMEM258-201ENST00000257262 ABCC9O60706 1549 aa18.01■□□□□ 0.47
TMEM258-201ENST00000257262 DCAF8L2P0C7V8 631 aa17.34■□□□□ 0.37
TMEM258-201ENST00000257262 RB1CC1Q8TDY2 1594 aa17.31■□□□□ 0.36
TMEM258-201ENST00000257262 NACADO15069 1562 aa17.28■□□□□ 0.36
TMEM258-201ENST00000257262 FOXD1Q16676 465 aa17.22■□□□□ 0.35
TMEM258-201ENST00000257262 ZCCHC6Q5VYS8 1495 aaKnown RBP17.21■□□□□ 0.35
TMEM258-201ENST00000257262 MYO15BQ96JP2 1530 aa17.16■□□□□ 0.34
TMEM258-201ENST00000257262 DCAF1Q9Y4B6 1507 aa17.09■□□□□ 0.33
TMEM258-201ENST00000257262 UNC13AQ9UPW8 1703 aa16.98■□□□□ 0.31
TMEM258-201ENST00000257262 PLPPR3Q6T4P5 718 aa16.88■□□□□ 0.29
TMEM258-201ENST00000257262 PABPN1Q86U42 306 aaKnown RBP eCLIP16.84■□□□□ 0.29
TMEM258-201ENST00000257262 BICRAQ9NZM4 1560 aa16.81■□□□□ 0.28
TMEM258-201ENST00000257262 SCRIBQ14160 1630 aa16.79■□□□□ 0.28
TMEM258-201ENST00000257262 DNAJC5BQ9UF47 199 aa16.66■□□□□ 0.26
TMEM258-201ENST00000257262 SHROOM4Q9ULL8 1493 aa16.56■□□□□ 0.24
TMEM258-201ENST00000257262 EIF4G1Q04637 1599 aaKnown RBP16.35■□□□□ 0.21
TMEM258-201ENST00000257262 CC2D2AQ9P2K1 1620 aa16.3■□□□□ 0.2
TMEM258-201ENST00000257262 PPP6R1Q9UPN7 881 aa16.24■□□□□ 0.19
TMEM258-201ENST00000257262 ADRA2BP18089 450 aa16.23■□□□□ 0.19
TMEM258-201ENST00000257262 PIAS4Q8N2W9 510 aaPredicted RBP16.19■□□□□ 0.18
TMEM258-201ENST00000257262 CECR2Q9BXF3 1484 aa16.16■□□□□ 0.18
TMEM258-201ENST00000257262 MSH5O43196 834 aa16.12■□□□□ 0.17
TMEM258-201ENST00000257262 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
TMEM258-201ENST00000257262 BAZ1AQ9NRL2 1556 aaPredicted RBP16.03■□□□□ 0.16
TMEM258-201ENST00000257262 ATAD2BQ9ULI0 1458 aa15.96■□□□□ 0.14
TMEM258-201ENST00000257262 MROH2BQ7Z745 1585 aa15.96■□□□□ 0.14
TMEM258-201ENST00000257262 NCAPD3P42695 1498 aa15.94■□□□□ 0.14
TMEM258-201ENST00000257262 SMARCA2P51531 1590 aa15.93■□□□□ 0.14
TMEM258-201ENST00000257262 PEG3Q9GZU2 1588 aa15.88■□□□□ 0.13
TMEM258-201ENST00000257262 HMGXB3Q12766 1538 aa15.85■□□□□ 0.13
TMEM258-201ENST00000257262 BAZ1BQ9UIG0 1483 aaKnown RBP15.83■□□□□ 0.12
TMEM258-201ENST00000257262 WIZO95785 1651 aa15.81■□□□□ 0.12
TMEM258-201ENST00000257262 RSF1Q96T23 1441 aaPredicted RBP15.77■□□□□ 0.11
TMEM258-201ENST00000257262 DNAJC5Q9H3Z4 198 aa15.62■□□□□ 0.09
TMEM258-201ENST00000257262 NESP48681 1621 aa15.6■□□□□ 0.09
TMEM258-201ENST00000257262 TOP2AP11388 1531 aaKnown RBP15.59■□□□□ 0.09
TMEM258-201ENST00000257262 LAMC3Q9Y6N6 1575 aa15.53■□□□□ 0.08
TMEM258-201ENST00000257262 ERCC6Q03468 1493 aa15.5■□□□□ 0.07
TMEM258-201ENST00000257262 CADPSQ9ULU8 1353 aa15.49■□□□□ 0.07
TMEM258-201ENST00000257262 CCDC88BA6NC98 1476 aa15.43■□□□□ 0.06
TMEM258-201ENST00000257262 KIF21AQ7Z4S6 1674 aa15.43■□□□□ 0.06
TMEM258-201ENST00000257262 PDS5BQ9NTI5 1447 aa15.42■□□□□ 0.06
TMEM258-201ENST00000257262 SUPT5HO00267 1087 aaKnown RBP15.4■□□□□ 0.06
TMEM258-201ENST00000257262 CFTRP13569 1480 aa15.39■□□□□ 0.05
TMEM258-201ENST00000257262 THOC2Q8NI27 1593 aaKnown RBP15.34■□□□□ 0.05
TMEM258-201ENST00000257262 CUX2O14529 1486 aa15.32■□□□□ 0.04
TMEM258-201ENST00000257262 FANCD2Q9BXW9 1451 aa15.31■□□□□ 0.04
TMEM258-201ENST00000257262 PRDM2Q13029 1718 aa15.31■□□□□ 0.04
TMEM258-201ENST00000257262 CEP164Q9UPV0 1460 aa15.28■□□□□ 0.04
TMEM258-201ENST00000257262 MRC2Q9UBG0 1479 aa15.26■□□□□ 0.03
TMEM258-201ENST00000257262 POTEDQ86YR6 584 aa15.21■□□□□ 0.03
TMEM258-201ENST00000257262 WDR62O43379 1518 aa15.21■□□□□ 0.03
TMEM258-201ENST00000257262 URB2Q14146 1524 aaKnown RBP15.17■□□□□ 0.02
TMEM258-201ENST00000257262 TOPBP1Q92547 1522 aa15.07■□□□□ 0
TMEM258-201ENST00000257262 ABCC8Q09428 1581 aa15.06■□□□□ 0
TMEM258-201ENST00000257262 DNMBPQ6XZF7 1577 aa15.05■□□□□ -0
TMEM258-201ENST00000257262 SCAF1Q9H7N4 1312 aaKnown RBP14.97□□□□□ -0.01
TMEM258-201ENST00000257262 IFT140Q96RY7 1462 aa14.96□□□□□ -0.01
TMEM258-201ENST00000257262 CUX1P39880 1505 aa14.96□□□□□ -0.02
TMEM258-201ENST00000257262 POLA1P09884 1462 aaPredicted RBP14.94□□□□□ -0.02
TMEM258-201ENST00000257262 TARBP1Q13395 1621 aaKnown RBP14.92□□□□□ -0.02
TMEM258-201ENST00000257262 TRIM41Q8WV44 630 aa14.92□□□□□ -0.02
TMEM258-201ENST00000257262 ZNF608Q9ULD9 1512 aaPredicted RBP14.92□□□□□ -0.02
TMEM258-201ENST00000257262 FGD5Q6ZNL6 1462 aa14.91□□□□□ -0.02
TMEM258-201ENST00000257262 RAD54L2Q9Y4B4 1467 aa14.89□□□□□ -0.03
TMEM258-201ENST00000257262 SOGA1O94964 1423 aa14.89□□□□□ -0.03
TMEM258-201ENST00000257262 EIF4G3O43432 1585 aaKnown RBP14.85□□□□□ -0.03
TMEM258-201ENST00000257262 WRNQ14191 1432 aaPredicted RBP eCLIP14.85□□□□□ -0.039e-6■■■■■ 50.1
TMEM258-201ENST00000257262 BIVM-ERCC5R4GMW8 1640 aa14.84□□□□□ -0.03
TMEM258-201ENST00000257262 SYNJ1O43426 1573 aa14.84□□□□□ -0.03
TMEM258-201ENST00000257262 AQRO60306 1485 aaKnown RBP eCLIP14.83□□□□□ -0.031e-6■■■■□ 24.7
TMEM258-201ENST00000257262 TOP2BQ02880 1626 aa14.83□□□□□ -0.04
TMEM258-201ENST00000257262 TDRD9Q8NDG6 1382 aaKnown RBP14.81□□□□□ -0.04
TMEM258-201ENST00000257262 MAPK8IP2Q13387 824 aaPredicted RBP14.8□□□□□ -0.04
TMEM258-201ENST00000257262 WDR97A6NE52 1622 aa14.8□□□□□ -0.04
TMEM258-201ENST00000257262 PPP4R3CPQ6ZMV5 832 aa14.78□□□□□ -0.04
TMEM258-201ENST00000257262 DMRT2Q9Y5R5 561 aa14.77□□□□□ -0.05
TMEM258-201ENST00000257262 ABCA10Q8WWZ4 1543 aa14.74□□□□□ -0.05
TMEM258-201ENST00000257262 OSCARQ8IYS5 282 aa14.73□□□□□ -0.05
TMEM258-201ENST00000257262 PBRM1Q86U86 1689 aa14.71□□□□□ -0.06
TMEM258-201ENST00000257262 ABCA5Q8WWZ7 1642 aa14.7□□□□□ -0.06
TMEM258-201ENST00000257262 GAPVD1Q14C86 1478 aa14.7□□□□□ -0.06
TMEM258-201ENST00000257262 CHD1O14646 1710 aa14.7□□□□□ -0.06
TMEM258-201ENST00000257262 GRIN2BQ13224 1484 aa14.69□□□□□ -0.06
TMEM258-201ENST00000257262 SNAPC4Q5SXM2 1469 aa14.68□□□□□ -0.06
TMEM258-201ENST00000257262 FBLN2P98095 1184 aa14.67□□□□□ -0.06
TMEM258-201ENST00000257262 MAGI1Q96QZ7 1491 aaPredicted RBP14.64□□□□□ -0.07
TMEM258-201ENST00000257262 CHMP7Q8WUX9 453 aaPredicted RBP14.62□□□□□ -0.07
TMEM258-201ENST00000257262 SYNJ2O15056 1496 aa14.6□□□□□ -0.07
TMEM258-201ENST00000257262 ERICH3Q5RHP9 1530 aa14.57□□□□□ -0.08
TMEM258-201ENST00000257262 ADAMTS12P58397 1594 aa14.55□□□□□ -0.08
TMEM258-201ENST00000257262 KIF27Q86VH2 1401 aa14.54□□□□□ -0.08
TMEM258-201ENST00000257262 FHAD1B1AJZ9 1412 aa14.53□□□□□ -0.08
TMEM258-201ENST00000257262 GRIN2AQ12879 1464 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms