Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CACNA1AO00555 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
CACNA1AO00555 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
CACNA1AO00555 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC24.88■■□□□ 1.57
CACNA1AO00555 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.87■■□□□ 1.57
CACNA1AO00555 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CACNA1AO00555 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC24.86■■□□□ 1.57
CACNA1AO00555 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.86■■□□□ 1.57
CACNA1AO00555 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.86■■□□□ 1.57
CACNA1AO00555 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC24.85■■□□□ 1.57
CACNA1AO00555 DUX4L9-201ENST00000449051 1259 ntBASIC24.85■■□□□ 1.57
CACNA1AO00555 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
CACNA1AO00555 AC010980.1-201ENST00000587192 1142 ntBASIC24.85■■□□□ 1.57
CACNA1AO00555 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC24.84■■□□□ 1.57
CACNA1AO00555 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CACNA1AO00555 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.84■■□□□ 1.57
CACNA1AO00555 AL592293.1-201ENST00000502889 1188 ntBASIC24.84■■□□□ 1.57
CACNA1AO00555 AC007029.1-201ENST00000604183 313 ntBASIC24.84■■□□□ 1.57
CACNA1AO00555 AC009831.1-201ENST00000580420 1582 ntBASIC24.84■■□□□ 1.57
CACNA1AO00555 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CACNA1AO00555 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.83■■□□□ 1.57
CACNA1AO00555 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1AO00555 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.82■■□□□ 1.56
CACNA1AO00555 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
CACNA1AO00555 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1AO00555 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.82■■□□□ 1.56
CACNA1AO00555 AC133552.2-201ENST00000619106 1032 ntBASIC24.82■■□□□ 1.56
CACNA1AO00555 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CACNA1AO00555 AL157400.5-201ENST00000507624 621 ntBASIC24.81■■□□□ 1.56
CACNA1AO00555 AC103834.1-201ENST00000520383 144 ntBASIC24.81■■□□□ 1.56
CACNA1AO00555 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC24.81■■□□□ 1.56
CACNA1AO00555 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.81■■□□□ 1.56
CACNA1AO00555 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC24.8■■□□□ 1.56
CACNA1AO00555 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
CACNA1AO00555 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1AO00555 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1AO00555 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1AO00555 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1AO00555 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.79■■□□□ 1.56
CACNA1AO00555 AC074183.2-201ENST00000623112 922 ntBASIC24.79■■□□□ 1.56
CACNA1AO00555 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1AO00555 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1AO00555 YBX1P4-201ENST00000392794 808 ntBASIC24.79■■□□□ 1.56
CACNA1AO00555 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC24.79■■□□□ 1.56
CACNA1AO00555 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
CACNA1AO00555 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1AO00555 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1AO00555 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1AO00555 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
CACNA1AO00555 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1AO00555 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.78■■□□□ 1.56
CACNA1AO00555 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.77■■□□□ 1.56
CACNA1AO00555 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
CACNA1AO00555 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CACNA1AO00555 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.77■■□□□ 1.56
CACNA1AO00555 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
CACNA1AO00555 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.76■■□□□ 1.55
CACNA1AO00555 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CACNA1AO00555 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
CACNA1AO00555 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CACNA1AO00555 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
CACNA1AO00555 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CACNA1AO00555 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.75■■□□□ 1.55
CACNA1AO00555 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CACNA1AO00555 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.74■■□□□ 1.55
CACNA1AO00555 MIR4508-201ENST00000584178 70 ntBASIC24.74■■□□□ 1.55
CACNA1AO00555 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.74■■□□□ 1.55
CACNA1AO00555 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CACNA1AO00555 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CACNA1AO00555 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CACNA1AO00555 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CACNA1AO00555 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1AO00555 MIR219A2-201ENST00000608502 1504 ntBASIC24.72■■□□□ 1.55
CACNA1AO00555 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1AO00555 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1AO00555 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC24.71■■□□□ 1.55
CACNA1AO00555 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
CACNA1AO00555 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.7■■□□□ 1.55
CACNA1AO00555 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CACNA1AO00555 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.7■■□□□ 1.54
CACNA1AO00555 AC103724.3-201ENST00000564481 992 ntBASIC24.7■■□□□ 1.54
CACNA1AO00555 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CACNA1AO00555 MIR6765-201ENST00000614092 87 ntBASIC24.69■■□□□ 1.54
CACNA1AO00555 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC24.68■■□□□ 1.54
CACNA1AO00555 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1AO00555 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
CACNA1AO00555 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
CACNA1AO00555 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC24.68■■□□□ 1.54
CACNA1AO00555 PRTG-204ENST00000561292 833 ntTSL 3 BASIC24.68■■□□□ 1.54
CACNA1AO00555 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
CACNA1AO00555 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.67■■□□□ 1.54
CACNA1AO00555 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.67■■□□□ 1.54
CACNA1AO00555 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
CACNA1AO00555 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.67■■□□□ 1.54
CACNA1AO00555 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC24.66■■□□□ 1.54
CACNA1AO00555 BHLHE23-202ENST00000612929 1109 ntBASIC24.66■■□□□ 1.54
CACNA1AO00555 SMPD5-203ENST00000639008 1464 ntBASIC24.65■■□□□ 1.54
CACNA1AO00555 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC24.65■■□□□ 1.54
CACNA1AO00555 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
CACNA1AO00555 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.64■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms