RNA–Protein interactions for RNA: ENST00000543789.6

CDKN3-207, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 5 BASIC

Gene CDKN3, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-207ENST00000543789 NISCHQ9Y2I1 1504 aa56.75■■■■■ 6.68
CDKN3-207ENST00000543789 ABCC9O60706 1549 aa51.21■■■■■ 5.79
CDKN3-207ENST00000543789 CCDC180Q9P1Z9 1646 aa50.83■■■■■ 5.73
CDKN3-207ENST00000543789 RB1CC1Q8TDY2 1594 aa48.59■■■■■ 5.37
CDKN3-207ENST00000543789 DNAJC5BQ9UF47 199 aa48.3■■■■■ 5.32
CDKN3-207ENST00000543789 NACADO15069 1562 aa48.25■■■■■ 5.31
CDKN3-207ENST00000543789 DCAF8L2P0C7V8 631 aa48.2■■■■■ 5.31
CDKN3-207ENST00000543789 PABPN1Q86U42 306 aaKnown RBP eCLIP47.77■■■■■ 5.24
CDKN3-207ENST00000543789 MYO15BQ96JP2 1530 aa47.53■■■■■ 5.2
CDKN3-207ENST00000543789 UNC13AQ9UPW8 1703 aa47.26■■■■■ 5.16
CDKN3-207ENST00000543789 BICRAQ9NZM4 1560 aa47.15■■■■■ 5.14
CDKN3-207ENST00000543789 ZCCHC6Q5VYS8 1495 aaKnown RBP46.96■■■■■ 5.11
CDKN3-207ENST00000543789 DCAF1Q9Y4B6 1507 aa46.84■■■■■ 5.09
CDKN3-207ENST00000543789 SHROOM4Q9ULL8 1493 aa46.54■■■■■ 5.04
CDKN3-207ENST00000543789 SCRIBQ14160 1630 aa46.39■■■■■ 5.02
CDKN3-207ENST00000543789 CC2D2AQ9P2K1 1620 aa46.17■■■■■ 4.98
CDKN3-207ENST00000543789 CECR2Q9BXF3 1484 aa46.16■■■■■ 4.98
CDKN3-207ENST00000543789 EIF4G1Q04637 1599 aaKnown RBP46.04■■■■■ 4.96
CDKN3-207ENST00000543789 NCAPD3P42695 1498 aa44.62■■■■■ 4.73
CDKN3-207ENST00000543789 DNAJC5Q9H3Z4 198 aa44.51■■■■■ 4.72
CDKN3-207ENST00000543789 ATAD2BQ9ULI0 1458 aa44.44■■■■■ 4.7
CDKN3-207ENST00000543789 ERCC6Q03468 1493 aa44.25■■■■■ 4.67
CDKN3-207ENST00000543789 SMARCA2P51531 1590 aa44.25■■■■■ 4.67
CDKN3-207ENST00000543789 SMARCA4P51532 1647 aa44.23■■■■■ 4.67
CDKN3-207ENST00000543789 CUX2O14529 1486 aa44.2■■■■■ 4.67
CDKN3-207ENST00000543789 HMGXB3Q12766 1538 aa44.15■■■■■ 4.66
CDKN3-207ENST00000543789 BAZ1AQ9NRL2 1556 aaPredicted RBP44.04■■■■■ 4.64
CDKN3-207ENST00000543789 BAZ1BQ9UIG0 1483 aaKnown RBP43.97■■■■■ 4.63
CDKN3-207ENST00000543789 NESP48681 1621 aa43.91■■■■■ 4.62
CDKN3-207ENST00000543789 PEG3Q9GZU2 1588 aa43.81■■■■■ 4.6
CDKN3-207ENST00000543789 MROH2BQ7Z745 1585 aa43.72■■■■■ 4.59
CDKN3-207ENST00000543789 LAMC3Q9Y6N6 1575 aa43.53■■■■■ 4.56
CDKN3-207ENST00000543789 PDS5BQ9NTI5 1447 aa43.42■■■■■ 4.54
CDKN3-207ENST00000543789 THOC2Q8NI27 1593 aaKnown RBP43.38■■■■■ 4.54
CDKN3-207ENST00000543789 CADPSQ9ULU8 1353 aa43.29■■■■■ 4.52
CDKN3-207ENST00000543789 KIF21AQ7Z4S6 1674 aa43.17■■■■■ 4.5
CDKN3-207ENST00000543789 WIZO95785 1651 aa43.1■■■■■ 4.49
CDKN3-207ENST00000543789 MRC2Q9UBG0 1479 aa42.99■■■■■ 4.47
CDKN3-207ENST00000543789 WDR62O43379 1518 aa42.83■■■■■ 4.45
CDKN3-207ENST00000543789 RSF1Q96T23 1441 aaPredicted RBP42.82■■■■■ 4.45
CDKN3-207ENST00000543789 CEP164Q9UPV0 1460 aa42.78■■■■■ 4.44
CDKN3-207ENST00000543789 FANCD2Q9BXW9 1451 aa42.74■■■■■ 4.43
CDKN3-207ENST00000543789 CFTRP13569 1480 aa42.71■■■■■ 4.43
CDKN3-207ENST00000543789 TOP2AP11388 1531 aaKnown RBP42.59■■■■■ 4.41
CDKN3-207ENST00000543789 TRIM41Q8WV44 630 aa42.49■■■■■ 4.39
CDKN3-207ENST00000543789 URB2Q14146 1524 aaKnown RBP42.36■■■■■ 4.37
CDKN3-207ENST00000543789 OSCARQ8IYS5 282 aa42.31■■■■■ 4.36
CDKN3-207ENST00000543789 CCDC88BA6NC98 1476 aa42.2■■■■■ 4.35
CDKN3-207ENST00000543789 IFT140Q96RY7 1462 aa41.96■■■■■ 4.31
CDKN3-207ENST00000543789 PRDM2Q13029 1718 aa41.95■■■■■ 4.31
CDKN3-207ENST00000543789 ZNF608Q9ULD9 1512 aaPredicted RBP41.89■■■■■ 4.3
CDKN3-207ENST00000543789 TOPBP1Q92547 1522 aa41.88■■■■■ 4.29
CDKN3-207ENST00000543789 ABCC8Q09428 1581 aa41.82■■■■■ 4.29
CDKN3-207ENST00000543789 DNMBPQ6XZF7 1577 aa41.66■■■■■ 4.26
CDKN3-207ENST00000543789 AQRO60306 1485 aaKnown RBP eCLIP41.54■■■■■ 4.24
CDKN3-207ENST00000543789 RIMBP3CA6NJZ7 1639 aa41.52■■■■■ 4.24
CDKN3-207ENST00000543789 RIMBP3BA6NNM3 1639 aa41.52■■■■■ 4.24
CDKN3-207ENST00000543789 RIMBP3Q9UFD9 1639 aa41.52■■■■■ 4.24
CDKN3-207ENST00000543789 EIF4G3O43432 1585 aaKnown RBP41.52■■■■■ 4.24
CDKN3-207ENST00000543789 ARHGEF11O15085 1522 aa41.45■■■■■ 4.23
CDKN3-207ENST00000543789 POLA1P09884 1462 aaPredicted RBP41.45■■■■■ 4.23
CDKN3-207ENST00000543789 TARBP1Q13395 1621 aaKnown RBP41.44■■■■■ 4.22
CDKN3-207ENST00000543789 FBLN2P98095 1184 aa41.4■■■■■ 4.22
CDKN3-207ENST00000543789 SOGA1O94964 1423 aa41.35■■■■■ 4.21
CDKN3-207ENST00000543789 CYB5RLQ6IPT4 315 aa41.34■■■■■ 4.21
CDKN3-207ENST00000543789 RAD54L2Q9Y4B4 1467 aa41.33■■■■■ 4.21
CDKN3-207ENST00000543789 TDRD9Q8NDG6 1382 aaKnown RBP41.29■■■■■ 4.2
CDKN3-207ENST00000543789 CHD1O14646 1710 aa41.18■■■■■ 4.18
CDKN3-207ENST00000543789 FGD5Q6ZNL6 1462 aa41.15■■■■■ 4.18
CDKN3-207ENST00000543789 CUX1P39880 1505 aa41.08■■■■■ 4.17
CDKN3-207ENST00000543789 CHMP7Q8WUX9 453 aaPredicted RBP41.07■■■■■ 4.17
CDKN3-207ENST00000543789 SNAPC4Q5SXM2 1469 aa41.05■■■■■ 4.16
CDKN3-207ENST00000543789 ARAP1Q96P48 1450 aa41.04■■■■■ 4.16
CDKN3-207ENST00000543789 WDR97A6NE52 1622 aa41■■■■■ 4.15
CDKN3-207ENST00000543789 GRIN2BQ13224 1484 aa40.96■■■■■ 4.15
CDKN3-207ENST00000543789 MAGI1Q96QZ7 1491 aaPredicted RBP40.94■■■■■ 4.14
CDKN3-207ENST00000543789 TRHP20396 242 aaPredicted RBP40.93■■■■■ 4.14
CDKN3-207ENST00000543789 SUPT5HO00267 1087 aaKnown RBP40.9■■■■■ 4.14
CDKN3-207ENST00000543789 SYNJ2O15056 1496 aa40.83■■■■■ 4.13
CDKN3-207ENST00000543789 CLASP1Q7Z460 1538 aa40.83■■■■■ 4.13
CDKN3-207ENST00000543789 SYNJ1O43426 1573 aa40.8■■■■■ 4.12
CDKN3-207ENST00000543789 GAPVD1Q14C86 1478 aa40.79■■■■■ 4.12
CDKN3-207ENST00000543789 ABCA10Q8WWZ4 1543 aa40.69■■■■■ 4.1
CDKN3-207ENST00000543789 WRNQ14191 1432 aaPredicted RBP eCLIP40.57■■■■■ 4.08
CDKN3-207ENST00000543789 PBRM1Q86U86 1689 aa40.55■■■■■ 4.08
CDKN3-207ENST00000543789 ABCA5Q8WWZ7 1642 aa40.53■■■■■ 4.08
CDKN3-207ENST00000543789 GRIN2AQ12879 1464 aa40.39■■■■■ 4.06
CDKN3-207ENST00000543789 TOP2BQ02880 1626 aa40.32■■■■■ 4.05
CDKN3-207ENST00000543789 NUP160Q12769 1436 aa40.29■■■■■ 4.04
CDKN3-207ENST00000543789 FHAD1B1AJZ9 1412 aa40.28■■■■■ 4.04
CDKN3-207ENST00000543789 BIVM-ERCC5R4GMW8 1640 aa40.27■■■■■ 4.04
CDKN3-207ENST00000543789 ADAMTS12P58397 1594 aa40.26■■■■■ 4.04
CDKN3-207ENST00000543789 CEP170Q5SW79 1584 aa40.19■■■■■ 4.02
CDKN3-207ENST00000543789 ERCC6L2Q5T890 1561 aa40.18■■■■■ 4.02
CDKN3-207ENST00000543789 ERICH3Q5RHP9 1530 aa40.16■■■■■ 4.02
CDKN3-207ENST00000543789 JPH4Q96JJ6 628 aa40.01■■■■■ 4
CDKN3-207ENST00000543789 SHROOM2Q13796 1616 aa40■■■■□ 3.99
CDKN3-207ENST00000543789 PRG4Q92954 1404 aaPredicted RBP39.96■■■■□ 3.99
CDKN3-207ENST00000543789 AEBP2Q6ZN18 517 aaPredicted RBP39.88■■■■□ 3.97
CDKN3-207ENST00000543789 IGF1RP08069 1367 aa39.73■■■■□ 3.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms