Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.32■■■■□ 3.08
CACNA1AO00555 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.96■■■■□ 3.03
CACNA1AO00555 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
CACNA1AO00555 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
CACNA1AO00555 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
CACNA1AO00555 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
CACNA1AO00555 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CACNA1AO00555 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
CACNA1AO00555 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.56■■■□□ 2.8
CACNA1AO00555 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.48■■■□□ 2.79
CACNA1AO00555 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CACNA1AO00555 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.17■■■□□ 2.74
CACNA1AO00555 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.73
CACNA1AO00555 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CACNA1AO00555 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CACNA1AO00555 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.86■■■□□ 2.69
CACNA1AO00555 AC006077.2-201ENST00000623591 457 ntBASIC31.7■■■□□ 2.67
CACNA1AO00555 ZNRF2P1-201ENST00000441407 443 ntBASIC31.68■■■□□ 2.66
CACNA1AO00555 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
CACNA1AO00555 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
CACNA1AO00555 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
CACNA1AO00555 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.48■■■□□ 2.63
CACNA1AO00555 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CACNA1AO00555 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CACNA1AO00555 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CACNA1AO00555 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.29■■■□□ 2.6
CACNA1AO00555 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.6
CACNA1AO00555 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.23■■■□□ 2.59
CACNA1AO00555 AL356512.1-201ENST00000607453 1739 ntBASIC31.16■■■□□ 2.58
CACNA1AO00555 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
CACNA1AO00555 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CACNA1AO00555 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
CACNA1AO00555 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.9■■■□□ 2.54
CACNA1AO00555 AP002365.1-201ENST00000603448 772 ntBASIC30.85■■■□□ 2.53
CACNA1AO00555 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.69■■■□□ 2.5
CACNA1AO00555 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.64■■■□□ 2.5
CACNA1AO00555 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.64■■■□□ 2.49
CACNA1AO00555 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
CACNA1AO00555 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.49
CACNA1AO00555 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.57■■■□□ 2.48
CACNA1AO00555 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
CACNA1AO00555 AC015813.7-201ENST00000623294 581 ntBASIC30.52■■■□□ 2.48
CACNA1AO00555 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.5■■■□□ 2.47
CACNA1AO00555 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.46
CACNA1AO00555 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CACNA1AO00555 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.4■■■□□ 2.46
CACNA1AO00555 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.39■■■□□ 2.46
CACNA1AO00555 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC30.36■■■□□ 2.45
CACNA1AO00555 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CACNA1AO00555 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CACNA1AO00555 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.2■■■□□ 2.42
CACNA1AO00555 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.15■■■□□ 2.42
CACNA1AO00555 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CACNA1AO00555 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
CACNA1AO00555 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.13■■■□□ 2.41
CACNA1AO00555 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.09■■■□□ 2.41
CACNA1AO00555 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.08■■■□□ 2.41
CACNA1AO00555 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.98■■■□□ 2.39
CACNA1AO00555 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
CACNA1AO00555 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.93■■■□□ 2.38
CACNA1AO00555 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.89■■■□□ 2.38
CACNA1AO00555 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.37
CACNA1AO00555 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.86■■■□□ 2.37
CACNA1AO00555 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CACNA1AO00555 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CACNA1AO00555 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC29.78■■■□□ 2.36
CACNA1AO00555 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CACNA1AO00555 RPS2P35-201ENST00000443417 897 ntBASIC29.76■■■□□ 2.35
CACNA1AO00555 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.73■■■□□ 2.35
CACNA1AO00555 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.72■■■□□ 2.35
CACNA1AO00555 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC29.68■■■□□ 2.34
CACNA1AO00555 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.67■■■□□ 2.34
CACNA1AO00555 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CACNA1AO00555 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.65■■■□□ 2.34
CACNA1AO00555 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CACNA1AO00555 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CACNA1AO00555 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CACNA1AO00555 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
CACNA1AO00555 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.54■■■□□ 2.32
CACNA1AO00555 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.54■■■□□ 2.32
CACNA1AO00555 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CACNA1AO00555 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CACNA1AO00555 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
CACNA1AO00555 DYNLL1-208ENST00000550178 581 ntBASIC29.49■■■□□ 2.31
CACNA1AO00555 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC29.47■■■□□ 2.31
CACNA1AO00555 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC29.46■■■□□ 2.31
CACNA1AO00555 RARRES2P7-201ENST00000567349 469 ntBASIC29.43■■■□□ 2.3
CACNA1AO00555 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CACNA1AO00555 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CACNA1AO00555 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.38■■■□□ 2.29
CACNA1AO00555 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CACNA1AO00555 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CACNA1AO00555 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.3■■■□□ 2.28
CACNA1AO00555 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.28■■■□□ 2.28
CACNA1AO00555 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.28■■■□□ 2.28
CACNA1AO00555 SUZ12P1-203ENST00000578195 985 ntBASIC29.27■■■□□ 2.28
CACNA1AO00555 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CACNA1AO00555 AC136428.2-201ENST00000563187 214 ntBASIC29.23■■■□□ 2.27
CACNA1AO00555 AC097358.2-201ENST00000607541 1159 ntBASIC29.15■■■□□ 2.26
CACNA1AO00555 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms