RNA–Protein interactions for RNA: ENST00000398020.6

TMEM55B-202, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TMEM55B, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-202ENST00000398020 NISCHQ9Y2I1 1504 aa60.87■■■■■ 7.33
TMEM55B-202ENST00000398020 CCDC180Q9P1Z9 1646 aa53.88■■■■■ 6.22
TMEM55B-202ENST00000398020 ABCC9O60706 1549 aa52.47■■■■■ 5.99
TMEM55B-202ENST00000398020 DCAF8L2P0C7V8 631 aa50.84■■■■■ 5.73
TMEM55B-202ENST00000398020 ZCCHC6Q5VYS8 1495 aaKnown RBP50.78■■■■■ 5.72
TMEM55B-202ENST00000398020 NACADO15069 1562 aa50.55■■■■■ 5.68
TMEM55B-202ENST00000398020 RB1CC1Q8TDY2 1594 aa50.54■■■■■ 5.68
TMEM55B-202ENST00000398020 MYO15BQ96JP2 1530 aa50.32■■■■■ 5.65
TMEM55B-202ENST00000398020 DCAF1Q9Y4B6 1507 aa50.29■■■■■ 5.64
TMEM55B-202ENST00000398020 UNC13AQ9UPW8 1703 aa49.48■■■■■ 5.51
TMEM55B-202ENST00000398020 SCRIBQ14160 1630 aa49.34■■■■■ 5.49
TMEM55B-202ENST00000398020 PABPN1Q86U42 306 aaKnown RBP eCLIP49.14■■■■■ 5.46
TMEM55B-202ENST00000398020 BICRAQ9NZM4 1560 aa49.05■■■■■ 5.44
TMEM55B-202ENST00000398020 SHROOM4Q9ULL8 1493 aa48.51■■■■■ 5.36
TMEM55B-202ENST00000398020 DNAJC5BQ9UF47 199 aa47.8■■■■■ 5.24
TMEM55B-202ENST00000398020 EIF4G1Q04637 1599 aaKnown RBP47.72■■■■■ 5.23
TMEM55B-202ENST00000398020 CECR2Q9BXF3 1484 aa47.45■■■■■ 5.19
TMEM55B-202ENST00000398020 CC2D2AQ9P2K1 1620 aa47.44■■■■■ 5.18
TMEM55B-202ENST00000398020 SMARCA4P51532 1647 aa47.16■■■■■ 5.14
TMEM55B-202ENST00000398020 BAZ1AQ9NRL2 1556 aaPredicted RBP47.13■■■■■ 5.14
TMEM55B-202ENST00000398020 MROH2BQ7Z745 1585 aa46.97■■■■■ 5.11
TMEM55B-202ENST00000398020 ATAD2BQ9ULI0 1458 aa46.79■■■■■ 5.08
TMEM55B-202ENST00000398020 SMARCA2P51531 1590 aa46.71■■■■■ 5.07
TMEM55B-202ENST00000398020 NCAPD3P42695 1498 aa46.65■■■■■ 5.06
TMEM55B-202ENST00000398020 PEG3Q9GZU2 1588 aa46.62■■■■■ 5.05
TMEM55B-202ENST00000398020 RSF1Q96T23 1441 aaPredicted RBP46.56■■■■■ 5.04
TMEM55B-202ENST00000398020 WIZO95785 1651 aa46.52■■■■■ 5.04
TMEM55B-202ENST00000398020 HMGXB3Q12766 1538 aa46.46■■■■■ 5.03
TMEM55B-202ENST00000398020 BAZ1BQ9UIG0 1483 aaKnown RBP46.44■■■■■ 5.02
TMEM55B-202ENST00000398020 TOP2AP11388 1531 aaKnown RBP45.97■■■■■ 4.95
TMEM55B-202ENST00000398020 SUPT5HO00267 1087 aaKnown RBP45.82■■■■■ 4.92
TMEM55B-202ENST00000398020 NESP48681 1621 aa45.55■■■■■ 4.88
TMEM55B-202ENST00000398020 CCDC88BA6NC98 1476 aa45.47■■■■■ 4.87
TMEM55B-202ENST00000398020 LAMC3Q9Y6N6 1575 aa45.37■■■■■ 4.85
TMEM55B-202ENST00000398020 CADPSQ9ULU8 1353 aa45.35■■■■■ 4.85
TMEM55B-202ENST00000398020 CFTRP13569 1480 aa45.16■■■■■ 4.82
TMEM55B-202ENST00000398020 ERCC6Q03468 1493 aa45.16■■■■■ 4.82
TMEM55B-202ENST00000398020 PDS5BQ9NTI5 1447 aa45.05■■■■■ 4.8
TMEM55B-202ENST00000398020 KIF21AQ7Z4S6 1674 aa44.99■■■■■ 4.79
TMEM55B-202ENST00000398020 FANCD2Q9BXW9 1451 aa44.86■■■■■ 4.77
TMEM55B-202ENST00000398020 PRDM2Q13029 1718 aa44.85■■■■■ 4.77
TMEM55B-202ENST00000398020 CEP164Q9UPV0 1460 aa44.76■■■■■ 4.76
TMEM55B-202ENST00000398020 THOC2Q8NI27 1593 aaKnown RBP44.69■■■■■ 4.75
TMEM55B-202ENST00000398020 MRC2Q9UBG0 1479 aa44.59■■■■■ 4.73
TMEM55B-202ENST00000398020 CUX2O14529 1486 aa44.44■■■■■ 4.7
TMEM55B-202ENST00000398020 WDR62O43379 1518 aa44.42■■■■■ 4.7
TMEM55B-202ENST00000398020 URB2Q14146 1524 aaKnown RBP44.41■■■■■ 4.7
TMEM55B-202ENST00000398020 TOPBP1Q92547 1522 aa44.19■■■■■ 4.66
TMEM55B-202ENST00000398020 DNMBPQ6XZF7 1577 aa44.15■■■■■ 4.66
TMEM55B-202ENST00000398020 ABCC8Q09428 1581 aa44.11■■■■■ 4.65
TMEM55B-202ENST00000398020 CUX1P39880 1505 aa44.03■■■■■ 4.64
TMEM55B-202ENST00000398020 WRNQ14191 1432 aaPredicted RBP eCLIP43.89■■■■■ 4.62
TMEM55B-202ENST00000398020 POLA1P09884 1462 aaPredicted RBP43.85■■■■■ 4.61
TMEM55B-202ENST00000398020 FGD5Q6ZNL6 1462 aa43.82■■■■■ 4.6
TMEM55B-202ENST00000398020 SYNJ1O43426 1573 aa43.8■■■■■ 4.6
TMEM55B-202ENST00000398020 IFT140Q96RY7 1462 aa43.77■■■■■ 4.6
TMEM55B-202ENST00000398020 TOP2BQ02880 1626 aa43.73■■■■■ 4.59
TMEM55B-202ENST00000398020 BIVM-ERCC5R4GMW8 1640 aa43.71■■■■■ 4.59
TMEM55B-202ENST00000398020 RAD54L2Q9Y4B4 1467 aa43.7■■■■■ 4.59
TMEM55B-202ENST00000398020 TARBP1Q13395 1621 aaKnown RBP43.67■■■■■ 4.58
TMEM55B-202ENST00000398020 SOGA1O94964 1423 aa43.67■■■■■ 4.58
TMEM55B-202ENST00000398020 ZNF608Q9ULD9 1512 aaPredicted RBP43.63■■■■■ 4.57
TMEM55B-202ENST00000398020 EIF4G3O43432 1585 aaKnown RBP43.45■■■■■ 4.55
TMEM55B-202ENST00000398020 AQRO60306 1485 aaKnown RBP eCLIP43.43■■■■■ 4.544e-8■■■■■ 34.1
TMEM55B-202ENST00000398020 TDRD9Q8NDG6 1382 aaKnown RBP43.43■■■■■ 4.54
TMEM55B-202ENST00000398020 WDR97A6NE52 1622 aa43.41■■■■■ 4.54
TMEM55B-202ENST00000398020 ABCA10Q8WWZ4 1543 aa43.36■■■■■ 4.53
TMEM55B-202ENST00000398020 TRIM41Q8WV44 630 aa43.17■■■■■ 4.5
TMEM55B-202ENST00000398020 ABCA5Q8WWZ7 1642 aa43.17■■■■■ 4.5
TMEM55B-202ENST00000398020 GAPVD1Q14C86 1478 aa43.17■■■■■ 4.5
TMEM55B-202ENST00000398020 GRIN2BQ13224 1484 aa43.08■■■■■ 4.49
TMEM55B-202ENST00000398020 PBRM1Q86U86 1689 aa43.07■■■■■ 4.49
TMEM55B-202ENST00000398020 SNAPC4Q5SXM2 1469 aa43.02■■■■■ 4.48
TMEM55B-202ENST00000398020 CHIC1Q5VXU3 224 aa42.92■■■■■ 4.46
TMEM55B-202ENST00000398020 KIF27Q86VH2 1401 aa42.91■■■■■ 4.46
TMEM55B-202ENST00000398020 MAGI1Q96QZ7 1491 aaPredicted RBP42.91■■■■■ 4.46
TMEM55B-202ENST00000398020 FBLN2P98095 1184 aa42.88■■■■■ 4.45
TMEM55B-202ENST00000398020 CHD1O14646 1710 aa42.84■■■■■ 4.45
TMEM55B-202ENST00000398020 ERICH3Q5RHP9 1530 aa42.84■■■■■ 4.45
TMEM55B-202ENST00000398020 SYNJ2O15056 1496 aa42.76■■■■■ 4.44
TMEM55B-202ENST00000398020 RUSC2Q8N2Y8 1516 aa42.76■■■■■ 4.44
TMEM55B-202ENST00000398020 CHMP7Q8WUX9 453 aaPredicted RBP42.76■■■■■ 4.44
TMEM55B-202ENST00000398020 ADAMTS12P58397 1594 aa42.74■■■■■ 4.43
TMEM55B-202ENST00000398020 OSCARQ8IYS5 282 aa42.73■■■■■ 4.43
TMEM55B-202ENST00000398020 IGF1RP08069 1367 aa42.7■■■■■ 4.43
TMEM55B-202ENST00000398020 FHAD1B1AJZ9 1412 aa42.66■■■■■ 4.42
TMEM55B-202ENST00000398020 DNAJC5Q9H3Z4 198 aa42.64■■■■■ 4.42
TMEM55B-202ENST00000398020 GRIN2AQ12879 1464 aa42.55■■■■■ 4.4
TMEM55B-202ENST00000398020 CUL7Q14999 1698 aa42.54■■■■■ 4.4
TMEM55B-202ENST00000398020 CARMIL1Q5VZK9 1371 aa42.46■■■■■ 4.39
TMEM55B-202ENST00000398020 FAM9AQ8IZU1 332 aaPredicted RBP42.38■■■■■ 4.38
TMEM55B-202ENST00000398020 CEP170Q5SW79 1584 aa42.36■■■■■ 4.37
TMEM55B-202ENST00000398020 CLASP1Q7Z460 1538 aa42.32■■■■■ 4.37
TMEM55B-202ENST00000398020 NUP160Q12769 1436 aa42.31■■■■■ 4.36
TMEM55B-202ENST00000398020 EEA1Q15075 1411 aa42.31■■■■■ 4.36
TMEM55B-202ENST00000398020 CSRNP3Q8WYN3 585 aa42.28■■■■■ 4.36
TMEM55B-202ENST00000398020 RAPGEF2Q9Y4G8 1499 aa42.25■■■■■ 4.35
TMEM55B-202ENST00000398020 PRXQ9BXM0 1461 aa42.19■■■■■ 4.34
TMEM55B-202ENST00000398020 ARHGEF11O15085 1522 aa42.06■■■■■ 4.32
TMEM55B-202ENST00000398020 RIMBP3CA6NJZ7 1639 aa42.03■■■■■ 4.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms