Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV39A0A0B4J263 AL121749.1-202ENST00000609313 2153 ntBASIC21.19■□□□□ 0.98
TRAV39A0A0B4J263 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.19■□□□□ 0.98
TRAV39A0A0B4J263 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAV39A0A0B4J263 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV39A0A0B4J263 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV39A0A0B4J263 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV39A0A0B4J263 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV39A0A0B4J263 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV39A0A0B4J263 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV39A0A0B4J263 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.17■□□□□ 0.98
TRAV39A0A0B4J263 LINC00273-201ENST00000539813 1452 ntBASIC21.17■□□□□ 0.98
TRAV39A0A0B4J263 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV39A0A0B4J263 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
TRAV39A0A0B4J263 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV39A0A0B4J263 LINC01003-201ENST00000564834 1764 ntBASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV39A0A0B4J263 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
TRAV39A0A0B4J263 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.14■□□□□ 0.98
TRAV39A0A0B4J263 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TRAV39A0A0B4J263 AP002414.2-202ENST00000590929 1450 ntBASIC21.13■□□□□ 0.97
TRAV39A0A0B4J263 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV39A0A0B4J263 AC044849.2-201ENST00000606596 710 ntBASIC21.13■□□□□ 0.97
TRAV39A0A0B4J263 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.13■□□□□ 0.97
TRAV39A0A0B4J263 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV39A0A0B4J263 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV39A0A0B4J263 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV39A0A0B4J263 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV39A0A0B4J263 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV39A0A0B4J263 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV39A0A0B4J263 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV39A0A0B4J263 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV39A0A0B4J263 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV39A0A0B4J263 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.11■□□□□ 0.97
TRAV39A0A0B4J263 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
TRAV39A0A0B4J263 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV39A0A0B4J263 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.1■□□□□ 0.97
TRAV39A0A0B4J263 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV39A0A0B4J263 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.1■□□□□ 0.97
TRAV39A0A0B4J263 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TRAV39A0A0B4J263 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV39A0A0B4J263 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV39A0A0B4J263 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.08■□□□□ 0.97
TRAV39A0A0B4J263 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV39A0A0B4J263 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV39A0A0B4J263 RPS2P35-201ENST00000443417 897 ntBASIC21.07■□□□□ 0.96
TRAV39A0A0B4J263 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TRAV39A0A0B4J263 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV39A0A0B4J263 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV39A0A0B4J263 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV39A0A0B4J263 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV39A0A0B4J263 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV39A0A0B4J263 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV39A0A0B4J263 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV39A0A0B4J263 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.06■□□□□ 0.96
TRAV39A0A0B4J263 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV39A0A0B4J263 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV39A0A0B4J263 AC021231.2-201ENST00000594613 730 ntBASIC21.05■□□□□ 0.96
TRAV39A0A0B4J263 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TRAV39A0A0B4J263 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TRAV39A0A0B4J263 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TRAV39A0A0B4J263 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV39A0A0B4J263 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.04■□□□□ 0.96
TRAV39A0A0B4J263 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV39A0A0B4J263 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV39A0A0B4J263 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV39A0A0B4J263 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV39A0A0B4J263 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV39A0A0B4J263 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV39A0A0B4J263 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV39A0A0B4J263 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV39A0A0B4J263 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAV39A0A0B4J263 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV39A0A0B4J263 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms