Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 TTC1-204ENST00000522073 1119 ntTSL 25.51□□□□□ -1.531e-6■■■□□ 15.1
SUB1P53999 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.341e-6■■■□□ 15.1
SUB1P53999 ATP5E-202ENST00000395659 1878 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.012e-13■■■□□ 15.1
SUB1P53999 ATP5E-201ENST00000243997 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.282e-13■■■□□ 15.1
SUB1P53999 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.572e-13■■■□□ 15.1
SUB1P53999 LRRC75A-AS1-215ENST00000491009 863 ntTSL 29.35□□□□□ -0.914e-29■■■□□ 15.1
SUB1P53999 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC8.62□□□□□ -1.034e-29■■■□□ 15.1
SUB1P53999 ANAPC16-203ENST00000478193 734 ntTSL 29.71□□□□□ -0.862e-13■■■□□ 15.1
SUB1P53999 ANAPC16-205ENST00000621663 3567 ntAPPRIS P1 TSL 3 BASIC9.2□□□□□ -0.942e-13■■■□□ 15.1
SUB1P53999 ANAPC16-201ENST00000299381 3195 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.052e-13■■■□□ 15.1
SUB1P53999 ANAPC16-204ENST00000615507 3100 ntTSL 3 BASIC7.41□□□□□ -1.222e-13■■■□□ 15.1
SUB1P53999 ANAPC16-202ENST00000470481 1828 ntTSL 1 (best)7.06□□□□□ -1.282e-13■■■□□ 15.1
SUB1P53999 FLNA-209ENST00000444578 843 ntTSL 312.16□□□□□ -0.462e-7■■■□□ 15.1
SUB1P53999 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.144e-7■■■□□ 15.1
SUB1P53999 EIF3I-205ENST00000483517 744 ntTSL 59.44□□□□□ -0.99e-8■■■□□ 15.1
SUB1P53999 EIF3I-206ENST00000489353 527 ntTSL 38.21□□□□□ -1.19e-8■■■□□ 15.1
SUB1P53999 EIF3I-203ENST00000471486 825 ntTSL 27.88□□□□□ -1.159e-8■■■□□ 15.1
SUB1P53999 EIF3I-204ENST00000474371 643 ntTSL 35.63□□□□□ -1.519e-8■■■□□ 15.1
SUB1P53999 PAICS-205ENST00000508554 698 ntTSL 25.7□□□□□ -1.55e-9■■■□□ 15.1
SUB1P53999 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC18.91■□□□□ 0.623e-7■■■□□ 15.1
SUB1P53999 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC18.18■□□□□ 0.53e-7■■■□□ 15.1
SUB1P53999 RAD51-204ENST00000525066 1545 ntTSL 517.43■□□□□ 0.383e-7■■■□□ 15.1
SUB1P53999 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.98□□□□□ -0.173e-7■■■□□ 15.1
SUB1P53999 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.443e-7■■■□□ 15.1
SUB1P53999 RAD51-202ENST00000382643 1588 ntTSL 2 BASIC9.08□□□□□ -0.963e-7■■■□□ 15.1
SUB1P53999 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC9.51□□□□□ -0.897e-9■■■□□ 15.1
SUB1P53999 SUPT5H-201ENST00000359191 3770 ntAPPRIS ALT1 TSL 1 (best) BASIC9.48□□□□□ -0.897e-9■■■□□ 15.1
SUB1P53999 SUPT5H-215ENST00000599117 3902 ntAPPRIS P3 TSL 5 BASIC9.11□□□□□ -0.957e-9■■■□□ 15.1
SUB1P53999 SUPT5H-204ENST00000432763 3710 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.977e-9■■■□□ 15.1
SUB1P53999 SUPT5H-213ENST00000598725 3742 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.047e-9■■■□□ 15.1
SUB1P53999 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.9■□□□□ 0.463e-7■■■□□ 15.1
SUB1P53999 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.323e-7■■■□□ 15.1
SUB1P53999 PPA1-206ENST00000625364 644 ntTSL 5 BASIC10.1□□□□□ -0.798e-7■■■□□ 15
SUB1P53999 PPA1-201ENST00000373230 787 ntTSL 55.14□□□□□ -1.598e-7■■■□□ 15
SUB1P53999 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.172e-50■■■□□ 15
SUB1P53999 P4HB-202ENST00000415593 1669 ntTSL 1 (best)13.82□□□□□ -0.22e-50■■■□□ 15
SUB1P53999 P4HB-223ENST00000576390 439 ntTSL 4 BASIC13.79□□□□□ -0.22e-50■■■□□ 15
SUB1P53999 P4HB-208ENST00000473021 914 ntTSL 1 (best)12.42□□□□□ -0.422e-50■■■□□ 15
SUB1P53999 P4HB-220ENST00000575069 2453 ntTSL 211.95□□□□□ -0.52e-50■■■□□ 15
SUB1P53999 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.025e-8■■■□□ 15
SUB1P53999 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.215e-8■■■□□ 15
SUB1P53999 AL020996.2-201ENST00000559265 568 ntTSL 415.29■□□□□ 0.045e-8■■■□□ 15
SUB1P53999 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.63□□□□□ -0.232e-6■■■□□ 15
SUB1P53999 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.252e-6■■■□□ 15
SUB1P53999 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.365e-8■■■□□ 15
SUB1P53999 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.485e-8■■■□□ 15
SUB1P53999 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.485e-8■■■□□ 15
SUB1P53999 PMM1-205ENST00000472620 1576 ntTSL 511.59□□□□□ -0.555e-8■■■□□ 15
SUB1P53999 PMM1-203ENST00000463617 2538 ntTSL 211.56□□□□□ -0.565e-8■■■□□ 15
SUB1P53999 LSS-211ENST00000522411 2523 ntTSL 2 BASIC11.52□□□□□ -0.572e-6■■■□□ 15
SUB1P53999 PMM1-208ENST00000485648 1405 ntTSL 511.27□□□□□ -0.65e-8■■■□□ 15
SUB1P53999 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.672e-6■■■□□ 15
SUB1P53999 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC10.76□□□□□ -0.695e-8■■■□□ 15
SUB1P53999 PMM1-207ENST00000482178 2020 ntTSL 210.36□□□□□ -0.755e-8■■■□□ 15
SUB1P53999 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.765e-8■■■□□ 15
SUB1P53999 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC10.32□□□□□ -0.765e-8■■■□□ 15
SUB1P53999 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.825e-8■■■□□ 15
SUB1P53999 GALNT2-202ENST00000485438 4030 ntTSL 59.13□□□□□ -0.955e-8■■■□□ 15
SUB1P53999 AL020996.2-202ENST00000527604 334 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.295e-8■■■□□ 15
SUB1P53999 SELENON-205ENST00000630065 2994 ntTSL 1 (best) BASIC6.67□□□□□ -1.345e-8■■■□□ 15
SUB1P53999 TIMP1-203ENST00000441738 341 ntTSL 56.15□□□□□ -1.425e-8■■■□□ 15
SUB1P53999 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.3□□□□□ -1.885e-8■■■□□ 15
SUB1P53999 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC14.9□□□□□ -0.023e-23■■■□□ 15
SUB1P53999 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.512e-6■■■□□ 15
SUB1P53999 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.582e-6■■■□□ 15
SUB1P53999 PSMC6-216ENST00000557557 2939 ntTSL 25.16□□□□□ -1.582e-6■■■□□ 15
SUB1P53999 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.72e-6■■■□□ 15
SUB1P53999 PSMC6-217ENST00000557632 611 ntTSL 23.5□□□□□ -1.852e-6■■■□□ 15
SUB1P53999 PSMC6-209ENST00000555175 752 ntTSL 32.18□□□□□ -2.062e-6■■■□□ 15
SUB1P53999 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.24■□□□□ 0.676e-8■■■□□ 14.9
SUB1P53999 POLR2E-205ENST00000586817 2441 ntTSL 218.2■□□□□ 0.56e-8■■■□□ 14.9
SUB1P53999 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.276e-8■■■□□ 14.9
SUB1P53999 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC16.27■□□□□ 0.26e-8■■■□□ 14.9
SUB1P53999 POLR2E-207ENST00000590060 1052 ntTSL 515.44■□□□□ 0.066e-8■■■□□ 14.9
SUB1P53999 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.156e-8■■■□□ 14.9
SUB1P53999 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.216e-8■■■□□ 14.9
SUB1P53999 POLR2E-201ENST00000215587 1286 ntTSL 313.11□□□□□ -0.316e-8■■■□□ 14.9
SUB1P53999 POLR2E-209ENST00000591767 1214 ntTSL 212.67□□□□□ -0.386e-8■■■□□ 14.9
SUB1P53999 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.486e-8■■■□□ 14.9
SUB1P53999 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.56e-8■■■□□ 14.9
SUB1P53999 POLR2E-203ENST00000586215 756 ntTSL 211.19□□□□□ -0.626e-8■■■□□ 14.9
SUB1P53999 MSH6-215ENST00000622629 4324 ntTSL 5 BASIC10.92□□□□□ -0.666e-8■■■□□ 14.9
SUB1P53999 POLR2E-206ENST00000589737 1105 ntTSL 210.86□□□□□ -0.676e-8■■■□□ 14.9
SUB1P53999 SEC16A-207ENST00000453963 4834 ntAPPRIS ALT2 TSL 1 (best)10.82□□□□□ -0.686e-8■■■□□ 14.9
SUB1P53999 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.696e-8■■■□□ 14.9
SUB1P53999 MSH6-210ENST00000540021 3930 ntTSL 2 BASIC10.75□□□□□ -0.696e-8■■■□□ 14.9
SUB1P53999 MSH6-213ENST00000614496 4150 ntTSL 1 (best) BASIC10.44□□□□□ -0.746e-8■■■□□ 14.9
SUB1P53999 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.746e-8■■■□□ 14.9
SUB1P53999 MSH6-201ENST00000234420 7476 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.86e-8■■■□□ 14.9
SUB1P53999 SEC16A-205ENST00000371706 8093 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.86e-8■■■□□ 14.9
SUB1P53999 ARNT-204ENST00000471844 3703 ntTSL 210.04□□□□□ -0.86e-8■■■□□ 14.9
SUB1P53999 MSH6-204ENST00000445503 4158 ntTSL 1 (best)9.8□□□□□ -0.846e-8■■■□□ 14.9
SUB1P53999 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC9.79□□□□□ -0.846e-8■■■□□ 14.9
SUB1P53999 POLR2E-202ENST00000585838 487 ntTSL 58.3□□□□□ -1.086e-8■■■□□ 14.9
SUB1P53999 NDUFA9-206ENST00000540688 642 ntTSL 2 BASIC8.09□□□□□ -1.116e-8■■■□□ 14.9
SUB1P53999 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.136e-8■■■□□ 14.9
SUB1P53999 SEC16A-201ENST00000277537 3910 ntAPPRIS ALT2 TSL 1 (best)7.46□□□□□ -1.226e-8■■■□□ 14.9
SUB1P53999 AC005833.3-201ENST00000543979 864 ntTSL 27.1□□□□□ -1.276e-8■■■□□ 14.9
SUB1P53999 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC5.83□□□□□ -1.486e-8■■■□□ 14.9
SUB1P53999 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.496e-8■■■□□ 14.9
Retrieved 100 of 11,644 protein–RNA pairs in 279.4 ms