RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 NISCHQ9Y2I1 1504 aa71.48■■■■■ 9.03
HMGB1-205ENST00000399494 ABCC9O60706 1549 aa64.32■■■■■ 7.89
HMGB1-205ENST00000399494 CCDC180Q9P1Z9 1646 aa64.1■■■■■ 7.85
HMGB1-205ENST00000399494 RB1CC1Q8TDY2 1594 aa61.13■■■■■ 7.38
HMGB1-205ENST00000399494 NACADO15069 1562 aa60.7■■■■■ 7.31
HMGB1-205ENST00000399494 DNAJC5BQ9UF47 199 aa60.6■■■■■ 7.29
HMGB1-205ENST00000399494 DCAF8L2P0C7V8 631 aa60.46■■■■■ 7.27
HMGB1-205ENST00000399494 PABPN1Q86U42 306 aaKnown RBP eCLIP59.94■■■■■ 7.19
HMGB1-205ENST00000399494 MYO15BQ96JP2 1530 aa59.85■■■■■ 7.17
HMGB1-205ENST00000399494 UNC13AQ9UPW8 1703 aa59.71■■■■■ 7.15
HMGB1-205ENST00000399494 BICRAQ9NZM4 1560 aa59.4■■■■■ 7.1
HMGB1-205ENST00000399494 ZCCHC6Q5VYS8 1495 aaKnown RBP59.18■■■■■ 7.06
HMGB1-205ENST00000399494 DCAF1Q9Y4B6 1507 aa59.03■■■■■ 7.04
HMGB1-205ENST00000399494 SHROOM4Q9ULL8 1493 aa58.53■■■■■ 6.96
HMGB1-205ENST00000399494 SCRIBQ14160 1630 aa58.41■■■■■ 6.94
HMGB1-205ENST00000399494 CC2D2AQ9P2K1 1620 aa58.07■■■■■ 6.89
HMGB1-205ENST00000399494 CECR2Q9BXF3 1484 aa57.95■■■■■ 6.87
HMGB1-205ENST00000399494 EIF4G1Q04637 1599 aaKnown RBP57.91■■■■■ 6.86
HMGB1-205ENST00000399494 NCAPD3P42695 1498 aa56.11■■■■■ 6.57
HMGB1-205ENST00000399494 ATAD2BQ9ULI0 1458 aa55.88■■■■■ 6.54
HMGB1-205ENST00000399494 SMARCA4P51532 1647 aa55.74■■■■■ 6.51
HMGB1-205ENST00000399494 DNAJC5Q9H3Z4 198 aa55.72■■■■■ 6.51
HMGB1-205ENST00000399494 SMARCA2P51531 1590 aa55.67■■■■■ 6.5
HMGB1-205ENST00000399494 HMGXB3Q12766 1538 aa55.59■■■■■ 6.49
HMGB1-205ENST00000399494 ERCC6Q03468 1493 aa55.5■■■■■ 6.48
HMGB1-205ENST00000399494 CUX2O14529 1486 aa55.47■■■■■ 6.47
HMGB1-205ENST00000399494 BAZ1AQ9NRL2 1556 aaPredicted RBP55.45■■■■■ 6.47
HMGB1-205ENST00000399494 BAZ1BQ9UIG0 1483 aaKnown RBP55.3■■■■■ 6.44
HMGB1-205ENST00000399494 NESP48681 1621 aa55.24■■■■■ 6.43
HMGB1-205ENST00000399494 PEG3Q9GZU2 1588 aa55.23■■■■■ 6.43
HMGB1-205ENST00000399494 MROH2BQ7Z745 1585 aa55.08■■■■■ 6.41
HMGB1-205ENST00000399494 LAMC3Q9Y6N6 1575 aa54.78■■■■■ 6.36
HMGB1-205ENST00000399494 THOC2Q8NI27 1593 aaKnown RBP54.63■■■■■ 6.34
HMGB1-205ENST00000399494 PDS5BQ9NTI5 1447 aa54.52■■■■■ 6.32
HMGB1-205ENST00000399494 KIF21AQ7Z4S6 1674 aa54.43■■■■■ 6.3
HMGB1-205ENST00000399494 CADPSQ9ULU8 1353 aa54.39■■■■■ 6.3
HMGB1-205ENST00000399494 WIZO95785 1651 aa54.39■■■■■ 6.3
HMGB1-205ENST00000399494 MRC2Q9UBG0 1479 aa54.02■■■■■ 6.24
HMGB1-205ENST00000399494 RSF1Q96T23 1441 aaPredicted RBP53.93■■■■■ 6.22
HMGB1-205ENST00000399494 WDR62O43379 1518 aa53.88■■■■■ 6.22
HMGB1-205ENST00000399494 CEP164Q9UPV0 1460 aa53.77■■■■■ 6.2
HMGB1-205ENST00000399494 CFTRP13569 1480 aa53.72■■■■■ 6.19
HMGB1-205ENST00000399494 FANCD2Q9BXW9 1451 aa53.72■■■■■ 6.19
HMGB1-205ENST00000399494 TOP2AP11388 1531 aaKnown RBP53.67■■■■■ 6.18
HMGB1-205ENST00000399494 URB2Q14146 1524 aaKnown RBP53.31■■■■■ 6.12
HMGB1-205ENST00000399494 TRIM41Q8WV44 630 aa53.15■■■■■ 6.1
HMGB1-205ENST00000399494 CCDC88BA6NC98 1476 aa53.14■■■■■ 6.1
HMGB1-205ENST00000399494 PRDM2Q13029 1718 aa53.03■■■■■ 6.08
HMGB1-205ENST00000399494 OSCARQ8IYS5 282 aa53.02■■■■■ 6.08
HMGB1-205ENST00000399494 IFT140Q96RY7 1462 aa52.72■■■■■ 6.03
HMGB1-205ENST00000399494 TOPBP1Q92547 1522 aa52.7■■■■■ 6.03
HMGB1-205ENST00000399494 ZNF608Q9ULD9 1512 aaPredicted RBP52.67■■■■■ 6.02
HMGB1-205ENST00000399494 ABCC8Q09428 1581 aa52.58■■■■■ 6.01
HMGB1-205ENST00000399494 DNMBPQ6XZF7 1577 aa52.46■■■■■ 5.99
HMGB1-205ENST00000399494 EIF4G3O43432 1585 aaKnown RBP52.29■■■■■ 5.96
HMGB1-205ENST00000399494 TARBP1Q13395 1621 aaKnown RBP52.23■■■■■ 5.95
HMGB1-205ENST00000399494 RIMBP3CA6NJZ7 1639 aa52.22■■■■■ 5.95
HMGB1-205ENST00000399494 RIMBP3BA6NNM3 1639 aa52.22■■■■■ 5.95
HMGB1-205ENST00000399494 RIMBP3Q9UFD9 1639 aa52.22■■■■■ 5.95
HMGB1-205ENST00000399494 AQRO60306 1485 aaKnown RBP eCLIP52.21■■■■■ 5.952e-9■■■■□ 24.4
HMGB1-205ENST00000399494 POLA1P09884 1462 aaPredicted RBP52.15■■■■■ 5.94
HMGB1-205ENST00000399494 ARHGEF11O15085 1522 aa52.06■■■■■ 5.92
HMGB1-205ENST00000399494 RAD54L2Q9Y4B4 1467 aa51.99■■■■■ 5.91
HMGB1-205ENST00000399494 SOGA1O94964 1423 aa51.97■■■■■ 5.91
HMGB1-205ENST00000399494 CHD1O14646 1710 aa51.92■■■■■ 5.9
HMGB1-205ENST00000399494 FBLN2P98095 1184 aa51.9■■■■■ 5.9
HMGB1-205ENST00000399494 TDRD9Q8NDG6 1382 aaKnown RBP51.88■■■■■ 5.9
HMGB1-205ENST00000399494 FGD5Q6ZNL6 1462 aa51.8■■■■■ 5.88
HMGB1-205ENST00000399494 CYB5RLQ6IPT4 315 aa51.78■■■■■ 5.88
HMGB1-205ENST00000399494 CUX1P39880 1505 aa51.74■■■■■ 5.87
HMGB1-205ENST00000399494 WDR97A6NE52 1622 aa51.64■■■■■ 5.86
HMGB1-205ENST00000399494 SNAPC4Q5SXM2 1469 aa51.61■■■■■ 5.85
HMGB1-205ENST00000399494 ARAP1Q96P48 1450 aa51.55■■■■■ 5.84
HMGB1-205ENST00000399494 CHMP7Q8WUX9 453 aaPredicted RBP51.51■■■■■ 5.84
HMGB1-205ENST00000399494 GRIN2BQ13224 1484 aa51.48■■■■■ 5.83
HMGB1-205ENST00000399494 SUPT5HO00267 1087 aaKnown RBP51.47■■■■■ 5.83
HMGB1-205ENST00000399494 MAGI1Q96QZ7 1491 aaPredicted RBP51.47■■■■■ 5.83
HMGB1-205ENST00000399494 CLASP1Q7Z460 1538 aa51.38■■■■■ 5.82
HMGB1-205ENST00000399494 SYNJ2O15056 1496 aa51.32■■■■■ 5.81
HMGB1-205ENST00000399494 SYNJ1O43426 1573 aa51.31■■■■■ 5.8
HMGB1-205ENST00000399494 GAPVD1Q14C86 1478 aa51.29■■■■■ 5.8
HMGB1-205ENST00000399494 TRHP20396 242 aaPredicted RBP51.22■■■■■ 5.79
HMGB1-205ENST00000399494 ABCA10Q8WWZ4 1543 aa51.22■■■■■ 5.79
HMGB1-205ENST00000399494 PBRM1Q86U86 1689 aa51.18■■■■■ 5.78
HMGB1-205ENST00000399494 ABCA5Q8WWZ7 1642 aa51.1■■■■■ 5.77
HMGB1-205ENST00000399494 WRNQ14191 1432 aaPredicted RBP eCLIP51■■■■■ 5.75
HMGB1-205ENST00000399494 TOP2BQ02880 1626 aa50.85■■■■■ 5.73
HMGB1-205ENST00000399494 BIVM-ERCC5R4GMW8 1640 aa50.84■■■■■ 5.73
HMGB1-205ENST00000399494 GRIN2AQ12879 1464 aa50.8■■■■■ 5.72
HMGB1-205ENST00000399494 ADAMTS12P58397 1594 aa50.7■■■■■ 5.71
HMGB1-205ENST00000399494 NUP160Q12769 1436 aa50.66■■■■■ 5.7
HMGB1-205ENST00000399494 FHAD1B1AJZ9 1412 aa50.63■■■■■ 5.7
HMGB1-205ENST00000399494 CEP170Q5SW79 1584 aa50.62■■■■■ 5.69
HMGB1-205ENST00000399494 ERCC6L2Q5T890 1561 aa50.6■■■■■ 5.69
HMGB1-205ENST00000399494 ERICH3Q5RHP9 1530 aa50.56■■■■■ 5.68
HMGB1-205ENST00000399494 SHROOM2Q13796 1616 aa50.42■■■■■ 5.66
HMGB1-205ENST00000399494 JPH4Q96JJ6 628 aa50.23■■■■■ 5.63
HMGB1-205ENST00000399494 PRG4Q92954 1404 aaPredicted RBP50.2■■■■■ 5.63
HMGB1-205ENST00000399494 RUSC2Q8N2Y8 1516 aa49.99■■■■■ 5.59
HMGB1-205ENST00000399494 IGF1RP08069 1367 aa49.98■■■■■ 5.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms