RNA–Protein interactions for RNA: ENST00000456754.6

TIMP1-205, Transcript of TIMP metallopeptidase inhibitor 1, humanhuman

TSL 1 (best) BASIC

Gene TIMP1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1-205ENST00000456754 NISCHQ9Y2I1 1504 aa33.76■■■■□ 3
TIMP1-205ENST00000456754 CCDC180Q9P1Z9 1646 aa29.83■■■□□ 2.37
TIMP1-205ENST00000456754 ABCC9O60706 1549 aa29.04■■■□□ 2.24
TIMP1-205ENST00000456754 ZCCHC6Q5VYS8 1495 aaKnown RBP28.2■■■□□ 2.1
TIMP1-205ENST00000456754 DCAF8L2P0C7V8 631 aa28.15■■■□□ 2.1
TIMP1-205ENST00000456754 NACADO15069 1562 aa27.95■■■□□ 2.07
TIMP1-205ENST00000456754 RB1CC1Q8TDY2 1594 aa27.93■■■□□ 2.06
TIMP1-205ENST00000456754 DCAF1Q9Y4B6 1507 aa27.85■■■□□ 2.05
TIMP1-205ENST00000456754 MYO15BQ96JP2 1530 aa27.82■■■□□ 2.04
TIMP1-205ENST00000456754 UNC13AQ9UPW8 1703 aa27.47■■□□□ 1.99
TIMP1-205ENST00000456754 SCRIBQ14160 1630 aa27.39■■□□□ 1.98
TIMP1-205ENST00000456754 PABPN1Q86U42 306 aaKnown RBP eCLIP27.21■■□□□ 1.95
TIMP1-205ENST00000456754 BICRAQ9NZM4 1560 aa27.2■■□□□ 1.94
TIMP1-205ENST00000456754 SHROOM4Q9ULL8 1493 aa27.01■■□□□ 1.91
TIMP1-205ENST00000456754 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.82
TIMP1-205ENST00000456754 EIF4G1Q04637 1599 aaKnown RBP26.41■■□□□ 1.82
TIMP1-205ENST00000456754 CECR2Q9BXF3 1484 aa26.37■■□□□ 1.81
TIMP1-205ENST00000456754 CC2D2AQ9P2K1 1620 aa26.25■■□□□ 1.79
TIMP1-205ENST00000456754 SMARCA4P51532 1647 aa26.16■■□□□ 1.78
TIMP1-205ENST00000456754 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
TIMP1-205ENST00000456754 BAZ1AQ9NRL2 1556 aaPredicted RBP26.1■■□□□ 1.77
TIMP1-205ENST00000456754 ATAD2BQ9ULI0 1458 aa25.92■■□□□ 1.74
TIMP1-205ENST00000456754 RSF1Q96T23 1441 aaPredicted RBP25.87■■□□□ 1.73
TIMP1-205ENST00000456754 WIZO95785 1651 aa25.87■■□□□ 1.73
TIMP1-205ENST00000456754 SMARCA2P51531 1590 aa25.84■■□□□ 1.73
TIMP1-205ENST00000456754 PEG3Q9GZU2 1588 aa25.83■■□□□ 1.73
TIMP1-205ENST00000456754 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
TIMP1-205ENST00000456754 HMGXB3Q12766 1538 aa25.71■■□□□ 1.71
TIMP1-205ENST00000456754 BAZ1BQ9UIG0 1483 aaKnown RBP25.71■■□□□ 1.71
TIMP1-205ENST00000456754 TOP2AP11388 1531 aaKnown RBP25.51■■□□□ 1.67
TIMP1-205ENST00000456754 SUPT5HO00267 1087 aaKnown RBP25.5■■□□□ 1.67
TIMP1-205ENST00000456754 NESP48681 1621 aa25.26■■□□□ 1.63
TIMP1-205ENST00000456754 CCDC88BA6NC98 1476 aa25.25■■□□□ 1.63
TIMP1-205ENST00000456754 CADPSQ9ULU8 1353 aa25.08■■□□□ 1.61
TIMP1-205ENST00000456754 LAMC3Q9Y6N6 1575 aa25.07■■□□□ 1.6
TIMP1-205ENST00000456754 CFTRP13569 1480 aa25.01■■□□□ 1.59
TIMP1-205ENST00000456754 KIF21AQ7Z4S6 1674 aa24.95■■□□□ 1.58
TIMP1-205ENST00000456754 ERCC6Q03468 1493 aa24.92■■□□□ 1.58
TIMP1-205ENST00000456754 PRDM2Q13029 1718 aa24.88■■□□□ 1.57
TIMP1-205ENST00000456754 PDS5BQ9NTI5 1447 aa24.86■■□□□ 1.57
TIMP1-205ENST00000456754 FANCD2Q9BXW9 1451 aa24.83■■□□□ 1.57
TIMP1-205ENST00000456754 CEP164Q9UPV0 1460 aa24.75■■□□□ 1.55
TIMP1-205ENST00000456754 THOC2Q8NI27 1593 aaKnown RBP24.75■■□□□ 1.55
TIMP1-205ENST00000456754 MRC2Q9UBG0 1479 aa24.66■■□□□ 1.54
TIMP1-205ENST00000456754 URB2Q14146 1524 aaKnown RBP24.62■■□□□ 1.53
TIMP1-205ENST00000456754 WDR62O43379 1518 aa24.58■■□□□ 1.53
TIMP1-205ENST00000456754 ABCC8Q09428 1581 aa24.5■■□□□ 1.51
TIMP1-205ENST00000456754 TOPBP1Q92547 1522 aa24.49■■□□□ 1.51
TIMP1-205ENST00000456754 CUX2O14529 1486 aa24.48■■□□□ 1.51
TIMP1-205ENST00000456754 CUX1P39880 1505 aa24.46■■□□□ 1.51
TIMP1-205ENST00000456754 DNMBPQ6XZF7 1577 aa24.46■■□□□ 1.51
TIMP1-205ENST00000456754 SYNJ1O43426 1573 aa24.37■■□□□ 1.49
TIMP1-205ENST00000456754 WRNQ14191 1432 aaPredicted RBP eCLIP24.35■■□□□ 1.49
TIMP1-205ENST00000456754 POLA1P09884 1462 aaPredicted RBP24.31■■□□□ 1.48
TIMP1-205ENST00000456754 FGD5Q6ZNL6 1462 aa24.31■■□□□ 1.48
TIMP1-205ENST00000456754 BIVM-ERCC5R4GMW8 1640 aa24.28■■□□□ 1.48
TIMP1-205ENST00000456754 TOP2BQ02880 1626 aa24.27■■□□□ 1.48
TIMP1-205ENST00000456754 RAD54L2Q9Y4B4 1467 aa24.26■■□□□ 1.47
TIMP1-205ENST00000456754 TARBP1Q13395 1621 aaKnown RBP24.21■■□□□ 1.47
TIMP1-205ENST00000456754 ZNF608Q9ULD9 1512 aaPredicted RBP24.2■■□□□ 1.46
TIMP1-205ENST00000456754 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
TIMP1-205ENST00000456754 SOGA1O94964 1423 aa24.18■■□□□ 1.46
TIMP1-205ENST00000456754 WDR97A6NE52 1622 aa24.1■■□□□ 1.45
TIMP1-205ENST00000456754 EIF4G3O43432 1585 aaKnown RBP24.07■■□□□ 1.44
TIMP1-205ENST00000456754 AQRO60306 1485 aaKnown RBP eCLIP24.07■■□□□ 1.442e-6■■■■□ 25.5
TIMP1-205ENST00000456754 TDRD9Q8NDG6 1382 aaKnown RBP24.06■■□□□ 1.44
TIMP1-205ENST00000456754 ABCA10Q8WWZ4 1543 aa24.03■■□□□ 1.44
TIMP1-205ENST00000456754 TRIM41Q8WV44 630 aa23.97■■□□□ 1.43
TIMP1-205ENST00000456754 ABCA5Q8WWZ7 1642 aa23.95■■□□□ 1.43
TIMP1-205ENST00000456754 CHIC1Q5VXU3 224 aa23.95■■□□□ 1.42
TIMP1-205ENST00000456754 GAPVD1Q14C86 1478 aa23.9■■□□□ 1.42
TIMP1-205ENST00000456754 PBRM1Q86U86 1689 aa23.89■■□□□ 1.42
TIMP1-205ENST00000456754 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
TIMP1-205ENST00000456754 GRIN2BQ13224 1484 aa23.83■■□□□ 1.41
TIMP1-205ENST00000456754 SNAPC4Q5SXM2 1469 aa23.83■■□□□ 1.41
TIMP1-205ENST00000456754 KIF27Q86VH2 1401 aa23.76■■□□□ 1.39
TIMP1-205ENST00000456754 CHD1O14646 1710 aa23.75■■□□□ 1.39
TIMP1-205ENST00000456754 MAGI1Q96QZ7 1491 aaPredicted RBP23.72■■□□□ 1.39
TIMP1-205ENST00000456754 ERICH3Q5RHP9 1530 aa23.72■■□□□ 1.39
TIMP1-205ENST00000456754 ADAMTS12P58397 1594 aa23.7■■□□□ 1.38
TIMP1-205ENST00000456754 IGF1RP08069 1367 aa23.69■■□□□ 1.38
TIMP1-205ENST00000456754 FBLN2P98095 1184 aa23.69■■□□□ 1.38
TIMP1-205ENST00000456754 SYNJ2O15056 1496 aa23.65■■□□□ 1.38
TIMP1-205ENST00000456754 CHMP7Q8WUX9 453 aaPredicted RBP23.61■■□□□ 1.37
TIMP1-205ENST00000456754 FHAD1B1AJZ9 1412 aa23.6■■□□□ 1.37
TIMP1-205ENST00000456754 FAM9AQ8IZU1 332 aaPredicted RBP23.6■■□□□ 1.37
TIMP1-205ENST00000456754 CUL7Q14999 1698 aa23.57■■□□□ 1.36
TIMP1-205ENST00000456754 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
TIMP1-205ENST00000456754 OSCARQ8IYS5 282 aa23.54■■□□□ 1.36
TIMP1-205ENST00000456754 CARMIL1Q5VZK9 1371 aa23.53■■□□□ 1.36
TIMP1-205ENST00000456754 CEP170Q5SW79 1584 aa23.5■■□□□ 1.35
TIMP1-205ENST00000456754 CSRNP3Q8WYN3 585 aa23.46■■□□□ 1.35
TIMP1-205ENST00000456754 EEA1Q15075 1411 aa23.44■■□□□ 1.34
TIMP1-205ENST00000456754 CLASP1Q7Z460 1538 aa23.43■■□□□ 1.34
TIMP1-205ENST00000456754 PRXQ9BXM0 1461 aa23.43■■□□□ 1.34
TIMP1-205ENST00000456754 NUP160Q12769 1436 aa23.43■■□□□ 1.34
TIMP1-205ENST00000456754 DNAJC5Q9H3Z4 198 aa23.43■■□□□ 1.34
TIMP1-205ENST00000456754 RAPGEF2Q9Y4G8 1499 aa23.42■■□□□ 1.34
TIMP1-205ENST00000456754 EHMT2Q96KQ7 1210 aa23.36■■□□□ 1.33
TIMP1-205ENST00000456754 KIF21BO75037 1637 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms