RNA–Protein interactions for RNA: ENST00000453963.5

SEC16A-207, Transcript of SEC16 homolog A, endoplasmic reticulum export factor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SEC16A, Length 4,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC16A-207ENST00000453963 DCAF8L2P0C7V8 631 aa20.77■□□□□ 0.92
SEC16A-207ENST00000453963 NISCHQ9Y2I1 1504 aa20.08■□□□□ 0.8
SEC16A-207ENST00000453963 SUPT5HO00267 1087 aaKnown RBP19.65■□□□□ 0.74
SEC16A-207ENST00000453963 SHROOM4Q9ULL8 1493 aa19.31■□□□□ 0.68
SEC16A-207ENST00000453963 PELP1Q8IZL8 1130 aaKnown RBP19.07■□□□□ 0.64
SEC16A-207ENST00000453963 EHMT2Q96KQ7 1210 aa18.83■□□□□ 0.61
SEC16A-207ENST00000453963 PCGF6Q9BYE7 350 aa18.8■□□□□ 0.6
SEC16A-207ENST00000453963 ZEB1P37275 1124 aaPredicted RBP18.65■□□□□ 0.58
SEC16A-207ENST00000453963 APLP2Q06481 763 aa18.65■□□□□ 0.58
SEC16A-207ENST00000453963 CENPBP07199 599 aaPredicted RBP18.57■□□□□ 0.56
SEC16A-207ENST00000453963 FAM9AQ8IZU1 332 aaPredicted RBP18.47■□□□□ 0.55
SEC16A-207ENST00000453963 MYT1Q01538 1121 aa18.41■□□□□ 0.54
SEC16A-207ENST00000453963 CCER1Q8TC90 406 aaPredicted RBP18.31■□□□□ 0.52
SEC16A-207ENST00000453963 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
SEC16A-207ENST00000453963 TTBK1Q5TCY1 1321 aaPredicted RBP18.24■□□□□ 0.51
SEC16A-207ENST00000453963 HRCP23327 699 aa18.18■□□□□ 0.5
SEC16A-207ENST00000453963 ERICH6Q7L0X2 663 aa18.18■□□□□ 0.5
SEC16A-207ENST00000453963 RANGAP1P46060 587 aaPredicted RBP18.1■□□□□ 0.49
SEC16A-207ENST00000453963 TRIM26Q12899 539 aaPredicted RBP18.07■□□□□ 0.48
SEC16A-207ENST00000453963 UBTFP17480 764 aaKnown RBP17.97■□□□□ 0.47
SEC16A-207ENST00000453963 NEFLP07196 543 aa17.96■□□□□ 0.47
SEC16A-207ENST00000453963 ATP1B4Q9UN42 357 aaPredicted RBP17.96■□□□□ 0.47
SEC16A-207ENST00000453963 YTHDC1Q96MU7 727 aaKnown RBP17.94■□□□□ 0.46
SEC16A-207ENST00000453963 CHIC1Q5VXU3 224 aa17.79■□□□□ 0.44
SEC16A-207ENST00000453963 PPARGC1BQ86YN6 1023 aaKnown RBP17.72■□□□□ 0.43
SEC16A-207ENST00000453963 LOC105371045A0A1W2PR82 267 aa17.67■□□□□ 0.42
SEC16A-207ENST00000453963 DIEXFQ68CQ4 756 aaKnown RBP17.48■□□□□ 0.39
SEC16A-207ENST00000453963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.4■□□□□ 0.38
SEC16A-207ENST00000453963 HNRNPUL2Q1KMD3 747 aaKnown RBP17.4■□□□□ 0.38
SEC16A-207ENST00000453963 ABCC9O60706 1549 aa17.4■□□□□ 0.38
SEC16A-207ENST00000453963 ITGAEP38570 1179 aa17.33■□□□□ 0.36
SEC16A-207ENST00000453963 PABPN1Q86U42 306 aaKnown RBP eCLIP17.32■□□□□ 0.36
SEC16A-207ENST00000453963 DAXXQ9UER7 740 aaPredicted RBP17.31■□□□□ 0.36
SEC16A-207ENST00000453963 MYT1LQ9UL68 1186 aa17.29■□□□□ 0.36
SEC16A-207ENST00000453963 GTF3C3Q9Y5Q9 886 aa17.26■□□□□ 0.35
SEC16A-207ENST00000453963 POLR3GLQ9BT43 218 aa17.19■□□□□ 0.34
SEC16A-207ENST00000453963 RTL5Q5HYW3 569 aaPredicted RBP17.14■□□□□ 0.34
SEC16A-207ENST00000453963 ACIN1Q9UKV3 1341 aaKnown RBP17.11■□□□□ 0.33
SEC16A-207ENST00000453963 ZNF316A6NFI3 1004 aaPredicted RBP17.07■□□□□ 0.32
SEC16A-207ENST00000453963 CNGB1Q14028 1251 aaPredicted RBP16.98■□□□□ 0.31
SEC16A-207ENST00000453963 BCANQ96GW7 911 aa16.95■□□□□ 0.3
SEC16A-207ENST00000453963 CDK11AQ9UQ88 783 aaPredicted RBP16.93■□□□□ 0.3
SEC16A-207ENST00000453963 FAM50AQ14320 339 aaKnown RBP16.92■□□□□ 0.3
SEC16A-207ENST00000453963 ANP32CO43423 234 aa16.92■□□□□ 0.3
SEC16A-207ENST00000453963 CLSPNQ9HAW4 1339 aa16.88■□□□□ 0.29
SEC16A-207ENST00000453963 SLC4A1APQ9BWU0 796 aaKnown RBP16.87■□□□□ 0.29
SEC16A-207ENST00000453963 DCAF1Q9Y4B6 1507 aa16.87■□□□□ 0.29
SEC16A-207ENST00000453963 NEUROD1Q13562 356 aa16.85■□□□□ 0.29
SEC16A-207ENST00000453963 FBLN2P98095 1184 aa16.84■□□□□ 0.29
SEC16A-207ENST00000453963 TRIM52Q96A61 297 aa16.81■□□□□ 0.28
SEC16A-207ENST00000453963 CSRNP3Q8WYN3 585 aa16.73■□□□□ 0.27
SEC16A-207ENST00000453963 SCRIBQ14160 1630 aa16.64■□□□□ 0.25
SEC16A-207ENST00000453963 P3H3Q8IVL6 736 aa16.64■□□□□ 0.25
SEC16A-207ENST00000453963 ANP32AP39687 249 aaKnown RBP16.64■□□□□ 0.25
SEC16A-207ENST00000453963 SCAF1Q9H7N4 1312 aaKnown RBP16.63■□□□□ 0.25
SEC16A-207ENST00000453963 FKBP8Q14318 412 aa16.59■□□□□ 0.25
SEC16A-207ENST00000453963 ZNF326Q5BKZ1 582 aaKnown RBP16.58■□□□□ 0.24
SEC16A-207ENST00000453963 ZCCHC6Q5VYS8 1495 aaKnown RBP16.58■□□□□ 0.24
SEC16A-207ENST00000453963 ARID3CA6NKF2 412 aa16.57■□□□□ 0.24
SEC16A-207ENST00000453963 ZBTB47Q9UFB7 747 aaPredicted RBP16.54■□□□□ 0.24
SEC16A-207ENST00000453963 ZNF777Q9ULD5 760 aaPredicted RBP16.46■□□□□ 0.23
SEC16A-207ENST00000453963 HNRNPUQ00839 825 aaKnown RBP eCLIP16.43■□□□□ 0.22
SEC16A-207ENST00000453963 DDX10Q13206 875 aaKnown RBP16.42■□□□□ 0.22
SEC16A-207ENST00000453963 TONSLQ96HA7 1378 aa16.41■□□□□ 0.22
SEC16A-207ENST00000453963 CANXP27824 592 aaKnown RBP16.41■□□□□ 0.22
SEC16A-207ENST00000453963 NEFMP07197 916 aa16.4■□□□□ 0.22
SEC16A-207ENST00000453963 MIER1Q8N108 512 aa16.4■□□□□ 0.22
SEC16A-207ENST00000453963 NPM2Q86SE8 214 aaKnown RBP16.4■□□□□ 0.22
SEC16A-207ENST00000453963 CCDC180Q9P1Z9 1646 aa16.36■□□□□ 0.21
SEC16A-207ENST00000453963 MYO15BQ96JP2 1530 aa16.31■□□□□ 0.2
SEC16A-207ENST00000453963 EIF5BO60841 1220 aaKnown RBP16.31■□□□□ 0.2
SEC16A-207ENST00000453963 NPM1P06748 294 aaKnown RBP eCLIP16.3■□□□□ 0.2
SEC16A-207ENST00000453963 SLC24A1O60721 1099 aa16.3■□□□□ 0.2
SEC16A-207ENST00000453963 FAM9BQ8IZU0 186 aa16.29■□□□□ 0.2
SEC16A-207ENST00000453963 CCDC136Q96JN2 1154 aa16.28■□□□□ 0.2
SEC16A-207ENST00000453963 ESF1Q9H501 851 aaKnown RBP16.26■□□□□ 0.19
SEC16A-207ENST00000453963 BCL11AQ9H165 835 aa16.25■□□□□ 0.19
SEC16A-207ENST00000453963 ANP32BQ92688 251 aaKnown RBP16.22■□□□□ 0.19
SEC16A-207ENST00000453963 RB1CC1Q8TDY2 1594 aa16.22■□□□□ 0.19
SEC16A-207ENST00000453963 UPF2Q9HAU5 1272 aaKnown RBP16.22■□□□□ 0.19
SEC16A-207ENST00000453963 NBR1Q14596 966 aa16.21■□□□□ 0.19
SEC16A-207ENST00000453963 ANP32EQ9BTT0 268 aa16.21■□□□□ 0.19
SEC16A-207ENST00000453963 GLIPR1L2Q4G1C9 344 aa16.2■□□□□ 0.18
SEC16A-207ENST00000453963 CHMP7Q8WUX9 453 aaPredicted RBP16.18■□□□□ 0.18
SEC16A-207ENST00000453963 CHGAP10645 457 aaKnown RBP16.18■□□□□ 0.18
SEC16A-207ENST00000453963 MRS2Q9HD23 443 aa16.18■□□□□ 0.18
SEC16A-207ENST00000453963 TMC1Q8TDI8 760 aa16.17■□□□□ 0.18
SEC16A-207ENST00000453963 STAG3Q9UJ98 1225 aa16.15■□□□□ 0.18
SEC16A-207ENST00000453963 CLIP1P30622 1438 aa16.15■□□□□ 0.18
SEC16A-207ENST00000453963 CHIC2Q9UKJ5 165 aa16.14■□□□□ 0.17
SEC16A-207ENST00000453963 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.14■□□□□ 0.17
SEC16A-207ENST00000453963 TSPY4P0CV99 314 aa16.13■□□□□ 0.17
SEC16A-207ENST00000453963 TSPY10P0CW01 314 aa16.13■□□□□ 0.17
SEC16A-207ENST00000453963 EEA1Q15075 1411 aa16.13■□□□□ 0.17
SEC16A-207ENST00000453963 MTUS2Q5JR59 1369 aa16.12■□□□□ 0.17
SEC16A-207ENST00000453963 HSP90AA1P07900 732 aaKnown RBP16.12■□□□□ 0.17
SEC16A-207ENST00000453963 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
SEC16A-207ENST00000453963 IRX6P78412 446 aaPredicted RBP16.09■□□□□ 0.17
SEC16A-207ENST00000453963 CEP162Q5TB80 1403 aa16.09■□□□□ 0.17
SEC16A-207ENST00000453963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.08■□□□□ 0.172e-6■■□□□ 11.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms