RNA–Protein interactions for RNA: ENST00000457828.6

LSS-205, Transcript of lanosterol synthase, humanhuman

TSL 1 (best) BASIC

Gene LSS, Length 4,390 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-205ENST00000457828 NISCHQ9Y2I1 1504 aa30.83■■■□□ 2.53
LSS-205ENST00000457828 DCAF8L2P0C7V8 631 aa29.84■■■□□ 2.37
LSS-205ENST00000457828 SHROOM4Q9ULL8 1493 aa27.9■■■□□ 2.06
LSS-205ENST00000457828 SUPT5HO00267 1087 aaKnown RBP27.62■■■□□ 2.01
LSS-205ENST00000457828 ABCC9O60706 1549 aa26.88■■□□□ 1.89
LSS-205ENST00000457828 PCGF6Q9BYE7 350 aa26.45■■□□□ 1.82
LSS-205ENST00000457828 EHMT2Q96KQ7 1210 aa26.26■■□□□ 1.79
LSS-205ENST00000457828 PABPN1Q86U42 306 aaKnown RBP eCLIP26.23■■□□□ 1.791e-7■□□□□ 8.7
LSS-205ENST00000457828 HRCP23327 699 aa25.98■■□□□ 1.75
LSS-205ENST00000457828 FAM9AQ8IZU1 332 aaPredicted RBP25.91■■□□□ 1.74
LSS-205ENST00000457828 CHIC1Q5VXU3 224 aa25.84■■□□□ 1.73
LSS-205ENST00000457828 CCDC180Q9P1Z9 1646 aa25.81■■□□□ 1.72
LSS-205ENST00000457828 PPARGC1BQ86YN6 1023 aaKnown RBP25.71■■□□□ 1.71
LSS-205ENST00000457828 TRIM41Q8WV44 630 aa25.67■■□□□ 1.7
LSS-205ENST00000457828 LOC105371045A0A1W2PR82 267 aa25.6■■□□□ 1.69
LSS-205ENST00000457828 ZCCHC6Q5VYS8 1495 aaKnown RBP25.52■■□□□ 1.68
LSS-205ENST00000457828 RANGAP1P46060 587 aaPredicted RBP25.45■■□□□ 1.66
LSS-205ENST00000457828 TRIM26Q12899 539 aaPredicted RBP25.34■■□□□ 1.65
LSS-205ENST00000457828 SCRIBQ14160 1630 aa25.32■■□□□ 1.64
LSS-205ENST00000457828 APLP2Q06481 763 aa25.29■■□□□ 1.64
LSS-205ENST00000457828 ZEB1P37275 1124 aaPredicted RBP25.26■■□□□ 1.63
LSS-205ENST00000457828 TTBK1Q5TCY1 1321 aaPredicted RBP25.23■■□□□ 1.63
LSS-205ENST00000457828 UBTFP17480 764 aaKnown RBP25.18■■□□□ 1.62
LSS-205ENST00000457828 RB1CC1Q8TDY2 1594 aa25.15■■□□□ 1.62
LSS-205ENST00000457828 ATP1B4Q9UN42 357 aaPredicted RBP25.07■■□□□ 1.6
LSS-205ENST00000457828 CCER1Q8TC90 406 aaPredicted RBP25.02■■□□□ 1.6
LSS-205ENST00000457828 MYO15BQ96JP2 1530 aa25.01■■□□□ 1.59
LSS-205ENST00000457828 NACADO15069 1562 aa24.98■■□□□ 1.59
LSS-205ENST00000457828 PELP1Q8IZL8 1130 aaKnown RBP24.91■■□□□ 1.58
LSS-205ENST00000457828 CENPBP07199 599 aaPredicted RBP24.75■■□□□ 1.55
LSS-205ENST00000457828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.62■■□□□ 1.53
LSS-205ENST00000457828 DCAF1Q9Y4B6 1507 aa24.59■■□□□ 1.53
LSS-205ENST00000457828 YTHDC1Q96MU7 727 aaKnown RBP24.57■■□□□ 1.52
LSS-205ENST00000457828 HNRNPUL2Q1KMD3 747 aaKnown RBP24.51■■□□□ 1.51
LSS-205ENST00000457828 FBLN2P98095 1184 aa24.5■■□□□ 1.51
LSS-205ENST00000457828 RSF1Q96T23 1441 aaPredicted RBP24.34■■□□□ 1.49
LSS-205ENST00000457828 DIEXFQ68CQ4 756 aaKnown RBP24.33■■□□□ 1.49
LSS-205ENST00000457828 CECR2Q9BXF3 1484 aa24.29■■□□□ 1.48
LSS-205ENST00000457828 BAZ1BQ9UIG0 1483 aaKnown RBP24.2■■□□□ 1.46
LSS-205ENST00000457828 GTF3C3Q9Y5Q9 886 aa24.19■■□□□ 1.46
LSS-205ENST00000457828 SCAF1Q9H7N4 1312 aaKnown RBP24.19■■□□□ 1.46
LSS-205ENST00000457828 MYT1LQ9UL68 1186 aa24.12■■□□□ 1.45
LSS-205ENST00000457828 ACIN1Q9UKV3 1341 aaKnown RBP24.1■■□□□ 1.45
LSS-205ENST00000457828 BAZ1AQ9NRL2 1556 aaPredicted RBP24.1■■□□□ 1.45
LSS-205ENST00000457828 CSRNP3Q8WYN3 585 aa24.09■■□□□ 1.45
LSS-205ENST00000457828 ITGAEP38570 1179 aa24.09■■□□□ 1.45
LSS-205ENST00000457828 P3H3Q8IVL6 736 aa23.99■■□□□ 1.43
LSS-205ENST00000457828 NEUROD1Q13562 356 aa23.97■■□□□ 1.43
LSS-205ENST00000457828 MYT1Q01538 1121 aa23.96■■□□□ 1.43
LSS-205ENST00000457828 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
LSS-205ENST00000457828 ARID3CA6NKF2 412 aa23.88■■□□□ 1.41
LSS-205ENST00000457828 ZNF316A6NFI3 1004 aaPredicted RBP23.82■■□□□ 1.4
LSS-205ENST00000457828 ERCC6Q03468 1493 aa23.81■■□□□ 1.4
LSS-205ENST00000457828 CHMP7Q8WUX9 453 aaPredicted RBP23.76■■□□□ 1.39
LSS-205ENST00000457828 SMARCA2P51531 1590 aa23.69■■□□□ 1.38
LSS-205ENST00000457828 FAM50AQ14320 339 aaKnown RBP23.68■■□□□ 1.38
LSS-205ENST00000457828 WRNQ14191 1432 aaPredicted RBP eCLIP23.67■■□□□ 1.384e-8■■■□□ 14.6
LSS-205ENST00000457828 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
LSS-205ENST00000457828 CCDC88BA6NC98 1476 aa23.57■■□□□ 1.36
LSS-205ENST00000457828 WIZO95785 1651 aa23.51■■□□□ 1.35
LSS-205ENST00000457828 NEFLP07196 543 aa23.5■■□□□ 1.35
LSS-205ENST00000457828 NPM1P06748 294 aaKnown RBP eCLIP23.49■■□□□ 1.35
LSS-205ENST00000457828 PDS5BQ9NTI5 1447 aa23.47■■□□□ 1.35
LSS-205ENST00000457828 MIER1Q8N108 512 aa23.45■■□□□ 1.34
LSS-205ENST00000457828 CDK11AQ9UQ88 783 aaPredicted RBP23.44■■□□□ 1.34
LSS-205ENST00000457828 SMARCA4P51532 1647 aa23.44■■□□□ 1.34
LSS-205ENST00000457828 CADPSQ9ULU8 1353 aa23.43■■□□□ 1.34
LSS-205ENST00000457828 ZNF777Q9ULD5 760 aaPredicted RBP23.41■■□□□ 1.34
LSS-205ENST00000457828 KIF27Q86VH2 1401 aa23.39■■□□□ 1.33
LSS-205ENST00000457828 TRIM52Q96A61 297 aa23.35■■□□□ 1.33
LSS-205ENST00000457828 BCANQ96GW7 911 aa23.35■■□□□ 1.33
LSS-205ENST00000457828 TOP2AP11388 1531 aaKnown RBP23.35■■□□□ 1.33
LSS-205ENST00000457828 CEP162Q5TB80 1403 aa23.34■■□□□ 1.33
LSS-205ENST00000457828 ERICH6Q7L0X2 663 aa23.32■■□□□ 1.32
LSS-205ENST00000457828 EIF4G1Q04637 1599 aaKnown RBP23.31■■□□□ 1.32
LSS-205ENST00000457828 CUX2O14529 1486 aa23.26■■□□□ 1.31
LSS-205ENST00000457828 TDRD9Q8NDG6 1382 aaKnown RBP23.25■■□□□ 1.31
LSS-205ENST00000457828 EEA1Q15075 1411 aa23.24■■□□□ 1.31
LSS-205ENST00000457828 ABCC8Q09428 1581 aa23.2■■□□□ 1.3
LSS-205ENST00000457828 SOGA1O94964 1423 aa23.19■■□□□ 1.3
LSS-205ENST00000457828 NCAPD3P42695 1498 aa23.18■■□□□ 1.3
LSS-205ENST00000457828 DNAJC5BQ9UF47 199 aa23.17■■□□□ 1.3
LSS-205ENST00000457828 CLIP1P30622 1438 aa23.17■■□□□ 1.3
LSS-205ENST00000457828 POLR3GLQ9BT43 218 aa23.15■■□□□ 1.3
LSS-205ENST00000457828 KCNH8Q96L42 1107 aa23.14■■□□□ 1.29
LSS-205ENST00000457828 CARMIL1Q5VZK9 1371 aa23.13■■□□□ 1.29
LSS-205ENST00000457828 TNIKQ9UKE5 1360 aa23.11■■□□□ 1.29
LSS-205ENST00000457828 GOLGA3Q08378 1498 aa23.1■■□□□ 1.29
LSS-205ENST00000457828 CEP164Q9UPV0 1460 aa23.1■■□□□ 1.29
LSS-205ENST00000457828 FANCD2Q9BXW9 1451 aa23.08■■□□□ 1.29
LSS-205ENST00000457828 MTUS2Q5JR59 1369 aa23.05■■□□□ 1.28
LSS-205ENST00000457828 BICRAQ9NZM4 1560 aa23.04■■□□□ 1.28
LSS-205ENST00000457828 CC2D2AQ9P2K1 1620 aa23.02■■□□□ 1.28
LSS-205ENST00000457828 PLEKHD1A6NEE1 506 aa23.01■■□□□ 1.27
LSS-205ENST00000457828 CHIC2Q9UKJ5 165 aa22.97■■□□□ 1.27
LSS-205ENST00000457828 CNGB1Q14028 1251 aaPredicted RBP22.95■■□□□ 1.26
LSS-205ENST00000457828 PLPPR3Q6T4P5 718 aa22.94■■□□□ 1.26
LSS-205ENST00000457828 ZNF326Q5BKZ1 582 aaKnown RBP22.93■■□□□ 1.26
LSS-205ENST00000457828 ESF1Q9H501 851 aaKnown RBP22.93■■□□□ 1.26
LSS-205ENST00000457828 FKBP8Q14318 412 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms