RNA–Protein interactions for RNA: ENST00000441738.1

TIMP1-203, Transcript of TIMP metallopeptidase inhibitor 1, humanhuman

TSL 5

Gene TIMP1, Length 341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1-203ENST00000441738 NISCHQ9Y2I1 1504 aa20.42■□□□□ 0.86
TIMP1-203ENST00000441738 CCDC180Q9P1Z9 1646 aa18.23■□□□□ 0.51
TIMP1-203ENST00000441738 ABCC9O60706 1549 aa17.96■□□□□ 0.47
TIMP1-203ENST00000441738 DNAJC5BQ9UF47 199 aa17.59■□□□□ 0.41
TIMP1-203ENST00000441738 ZCCHC6Q5VYS8 1495 aaKnown RBP17.06■□□□□ 0.32
TIMP1-203ENST00000441738 NACADO15069 1562 aa17.01■□□□□ 0.31
TIMP1-203ENST00000441738 RB1CC1Q8TDY2 1594 aa17.01■□□□□ 0.31
TIMP1-203ENST00000441738 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
TIMP1-203ENST00000441738 DCAF1Q9Y4B6 1507 aa16.91■□□□□ 0.3
TIMP1-203ENST00000441738 UNC13AQ9UPW8 1703 aa16.9■□□□□ 0.3
TIMP1-203ENST00000441738 DNAJC5Q9H3Z4 198 aa16.77■□□□□ 0.28
TIMP1-203ENST00000441738 DCAF8L2P0C7V8 631 aa16.73■□□□□ 0.27
TIMP1-203ENST00000441738 BICRAQ9NZM4 1560 aa16.66■□□□□ 0.26
TIMP1-203ENST00000441738 PABPN1Q86U42 306 aaKnown RBP eCLIP16.63■□□□□ 0.25
TIMP1-203ENST00000441738 SCRIBQ14160 1630 aa16.59■□□□□ 0.25
TIMP1-203ENST00000441738 SHROOM4Q9ULL8 1493 aa16.33■□□□□ 0.2
TIMP1-203ENST00000441738 CECR2Q9BXF3 1484 aa16.27■□□□□ 0.19
TIMP1-203ENST00000441738 CC2D2AQ9P2K1 1620 aa16.13■□□□□ 0.17
TIMP1-203ENST00000441738 EIF4G1Q04637 1599 aaKnown RBP16.12■□□□□ 0.17
TIMP1-203ENST00000441738 SMARCA4P51532 1647 aa15.9■□□□□ 0.14
TIMP1-203ENST00000441738 CUX2O14529 1486 aa15.81■□□□□ 0.12
TIMP1-203ENST00000441738 BAZ1AQ9NRL2 1556 aaPredicted RBP15.79■□□□□ 0.12
TIMP1-203ENST00000441738 MROH2BQ7Z745 1585 aa15.78■□□□□ 0.12
TIMP1-203ENST00000441738 PEG3Q9GZU2 1588 aa15.75■□□□□ 0.11
TIMP1-203ENST00000441738 TRIM41Q8WV44 630 aa15.71■□□□□ 0.11
TIMP1-203ENST00000441738 ATAD2BQ9ULI0 1458 aa15.71■□□□□ 0.1
TIMP1-203ENST00000441738 SMARCA2P51531 1590 aa15.67■□□□□ 0.1
TIMP1-203ENST00000441738 NCAPD3P42695 1498 aa15.67■□□□□ 0.1
TIMP1-203ENST00000441738 HMGXB3Q12766 1538 aa15.67■□□□□ 0.1
TIMP1-203ENST00000441738 WIZO95785 1651 aa15.65■□□□□ 0.1
TIMP1-203ENST00000441738 ERCC6Q03468 1493 aa15.58■□□□□ 0.08
TIMP1-203ENST00000441738 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
TIMP1-203ENST00000441738 RSF1Q96T23 1441 aaPredicted RBP15.54■□□□□ 0.08
TIMP1-203ENST00000441738 TOP2AP11388 1531 aaKnown RBP15.43■□□□□ 0.06
TIMP1-203ENST00000441738 NESP48681 1621 aa15.36■□□□□ 0.05
TIMP1-203ENST00000441738 LAMC3Q9Y6N6 1575 aa15.29■□□□□ 0.04
TIMP1-203ENST00000441738 KIF21AQ7Z4S6 1674 aa15.28■□□□□ 0.04
TIMP1-203ENST00000441738 PRDM2Q13029 1718 aa15.24■□□□□ 0.03
TIMP1-203ENST00000441738 THOC2Q8NI27 1593 aaKnown RBP15.2■□□□□ 0.02
TIMP1-203ENST00000441738 CCDC88BA6NC98 1476 aa15.2■□□□□ 0.02
TIMP1-203ENST00000441738 CADPSQ9ULU8 1353 aa15.16■□□□□ 0.02
TIMP1-203ENST00000441738 CFTRP13569 1480 aa15.15■□□□□ 0.02
TIMP1-203ENST00000441738 PDS5BQ9NTI5 1447 aa15.04■□□□□ -0
TIMP1-203ENST00000441738 FANCD2Q9BXW9 1451 aa15.03■□□□□ -0
TIMP1-203ENST00000441738 WDR62O43379 1518 aa15.02□□□□□ -0.01
TIMP1-203ENST00000441738 AEBP2Q6ZN18 517 aaPredicted RBP15.01□□□□□ -0.01
TIMP1-203ENST00000441738 OSCARQ8IYS5 282 aa15.01□□□□□ -0.01
TIMP1-203ENST00000441738 CEP164Q9UPV0 1460 aa15□□□□□ -0.01
TIMP1-203ENST00000441738 SUPT5HO00267 1087 aaKnown RBP14.99□□□□□ -0.01
TIMP1-203ENST00000441738 MRC2Q9UBG0 1479 aa14.99□□□□□ -0.01
TIMP1-203ENST00000441738 URB2Q14146 1524 aaKnown RBP14.97□□□□□ -0.01
TIMP1-203ENST00000441738 DNMBPQ6XZF7 1577 aa14.85□□□□□ -0.03
TIMP1-203ENST00000441738 TOPBP1Q92547 1522 aa14.84□□□□□ -0.03
TIMP1-203ENST00000441738 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
TIMP1-203ENST00000441738 CUX1P39880 1505 aa14.8□□□□□ -0.04
TIMP1-203ENST00000441738 RIMBP3CA6NJZ7 1639 aa14.79□□□□□ -0.04
TIMP1-203ENST00000441738 RIMBP3BA6NNM3 1639 aa14.79□□□□□ -0.04
TIMP1-203ENST00000441738 RIMBP3Q9UFD9 1639 aa14.79□□□□□ -0.04
TIMP1-203ENST00000441738 TARBP1Q13395 1621 aaKnown RBP14.77□□□□□ -0.04
TIMP1-203ENST00000441738 WDR97A6NE52 1622 aa14.75□□□□□ -0.05
TIMP1-203ENST00000441738 BIVM-ERCC5R4GMW8 1640 aa14.74□□□□□ -0.05
TIMP1-203ENST00000441738 ABCC8Q09428 1581 aa14.73□□□□□ -0.05
TIMP1-203ENST00000441738 POLA1P09884 1462 aaPredicted RBP14.73□□□□□ -0.05
TIMP1-203ENST00000441738 SYNJ1O43426 1573 aa14.73□□□□□ -0.05
TIMP1-203ENST00000441738 CYB5RLQ6IPT4 315 aa14.72□□□□□ -0.05
TIMP1-203ENST00000441738 ARHGEF11O15085 1522 aa14.71□□□□□ -0.06
TIMP1-203ENST00000441738 EIF4G3O43432 1585 aaKnown RBP14.69□□□□□ -0.06
TIMP1-203ENST00000441738 ZNF608Q9ULD9 1512 aaPredicted RBP14.69□□□□□ -0.06
TIMP1-203ENST00000441738 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
TIMP1-203ENST00000441738 TOP2BQ02880 1626 aa14.68□□□□□ -0.06
TIMP1-203ENST00000441738 IFT140Q96RY7 1462 aa14.67□□□□□ -0.06
TIMP1-203ENST00000441738 RAD54L2Q9Y4B4 1467 aa14.64□□□□□ -0.07
TIMP1-203ENST00000441738 WRNQ14191 1432 aaPredicted RBP eCLIP14.59□□□□□ -0.07
TIMP1-203ENST00000441738 ABCA5Q8WWZ7 1642 aa14.59□□□□□ -0.07
TIMP1-203ENST00000441738 PBRM1Q86U86 1689 aa14.58□□□□□ -0.08
TIMP1-203ENST00000441738 SOGA1O94964 1423 aa14.55□□□□□ -0.08
TIMP1-203ENST00000441738 CHD1O14646 1710 aa14.55□□□□□ -0.08
TIMP1-203ENST00000441738 AQRO60306 1485 aaKnown RBP eCLIP14.54□□□□□ -0.082e-6■■■■□ 25.5
TIMP1-203ENST00000441738 ABCA10Q8WWZ4 1543 aa14.54□□□□□ -0.08
TIMP1-203ENST00000441738 ARAP1Q96P48 1450 aa14.51□□□□□ -0.09
TIMP1-203ENST00000441738 TDRD9Q8NDG6 1382 aaKnown RBP14.48□□□□□ -0.09
TIMP1-203ENST00000441738 ILDR1Q86SU0 546 aaPredicted RBP14.48□□□□□ -0.09
TIMP1-203ENST00000441738 SNAPC4Q5SXM2 1469 aa14.44□□□□□ -0.1
TIMP1-203ENST00000441738 GAPVD1Q14C86 1478 aa14.43□□□□□ -0.1
TIMP1-203ENST00000441738 ADAMTS12P58397 1594 aa14.42□□□□□ -0.1
TIMP1-203ENST00000441738 GRIN2BQ13224 1484 aa14.41□□□□□ -0.1
TIMP1-203ENST00000441738 MAGI1Q96QZ7 1491 aaPredicted RBP14.39□□□□□ -0.11
TIMP1-203ENST00000441738 ERICH3Q5RHP9 1530 aa14.36□□□□□ -0.11
TIMP1-203ENST00000441738 CLASP1Q7Z460 1538 aa14.34□□□□□ -0.11
TIMP1-203ENST00000441738 SYNJ2O15056 1496 aa14.33□□□□□ -0.12
TIMP1-203ENST00000441738 FBLN2P98095 1184 aa14.3□□□□□ -0.12
TIMP1-203ENST00000441738 CEP170Q5SW79 1584 aa14.3□□□□□ -0.12
TIMP1-203ENST00000441738 RUSC2Q8N2Y8 1516 aa14.29□□□□□ -0.12
TIMP1-203ENST00000441738 GRIN2AQ12879 1464 aa14.28□□□□□ -0.12
TIMP1-203ENST00000441738 CUL7Q14999 1698 aa14.28□□□□□ -0.12
TIMP1-203ENST00000441738 FHAD1B1AJZ9 1412 aa14.24□□□□□ -0.13
TIMP1-203ENST00000441738 KIF27Q86VH2 1401 aa14.24□□□□□ -0.13
TIMP1-203ENST00000441738 NUP160Q12769 1436 aa14.23□□□□□ -0.13
TIMP1-203ENST00000441738 SHROOM2Q13796 1616 aa14.23□□□□□ -0.13
TIMP1-203ENST00000441738 IGF1RP08069 1367 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms